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Mouse SNP Summary
Symbol
Name
ID 		Cpgi2552
CpG island 2552
MGI:5667656

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238556209
MGI SNP Detail		 Chr11:6016590 Cpgi2552 1681 bp proximal
Gm74282 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582484471
MGI SNP Detail		 Chr11:6016641 Cpgi2552 1630 bp proximal
Gm74282 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs586039432
MGI SNP Detail		 Chr11:6016678 Cpgi2552 1593 bp proximal
Gm74282 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs578812495
MGI SNP Detail		 Chr11:6016729 Cpgi2552 1542 bp proximal
Gm74282 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29392725
MGI SNP Detail		 Chr11:6016775 Cpgi2552 1496 bp proximal
Gm74282 within coordinates of
 SNP A/C A C
rs264430568
MGI SNP Detail		 Chr11:6016897 Cpgi2552 1374 bp proximal
Gm74282 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232094950
MGI SNP Detail		 Chr11:6016922 Cpgi2552 1349 bp proximal
Gm74282 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247002125
MGI SNP Detail		 Chr11:6016940 Cpgi2552 1331 bp proximal
Gm74282 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29385409
MGI SNP Detail		 Chr11:6017029 Cpgi2552 1242 bp proximal
Gm74282 within coordinates of
 SNP A/G G A
rs29402299
MGI SNP Detail		 Chr11:6017032 Cpgi2552 1239 bp proximal
Gm74282 within coordinates of
 SNP A/G G A
rs243333984
MGI SNP Detail		 Chr11:6017138 Cpgi2552 1133 bp proximal
Gm74282 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs212962022
MGI SNP Detail		 Chr11:6017309 Cpgi2552 962 bp proximal
Gm74282 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29473425
MGI SNP Detail		 Chr11:6017405 Cpgi2552 866 bp proximal
Gm74282 within coordinates of
 SNP C/T T C
rs263919221
MGI SNP Detail		 Chr11:6017437 Cpgi2552 834 bp proximal
Gm74282 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227202645
MGI SNP Detail		 Chr11:6017504 Cpgi2552 767 bp proximal
Gm74282 within coordinates of
 SNP A/G A A A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G
rs233196950
MGI SNP Detail		 Chr11:6017552 Cpgi2552 719 bp proximal
Gm74282 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs252240334
MGI SNP Detail		 Chr11:6017613 Cpgi2552 658 bp proximal
Gm74282 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs219457697
MGI SNP Detail		 Chr11:6017614 Cpgi2552 657 bp proximal
Gm74282 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs238407143
MGI SNP Detail		 Chr11:6017710 Cpgi2552 561 bp proximal
Gm74282 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261645576
MGI SNP Detail		 Chr11:6017756 Cpgi2552 515 bp proximal
Gm74282 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221276486
MGI SNP Detail		 Chr11:6017836 Cpgi2552 435 bp proximal
Gm74282 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247367913
MGI SNP Detail		 Chr11:6017930 Cpgi2552 341 bp proximal
Gm74282 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs266103018
MGI SNP Detail		 Chr11:6017960 Cpgi2552 311 bp proximal
Gm74282 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs227187395
MGI SNP Detail		 Chr11:6018077 Cpgi2552 194 bp proximal
Gm74282 within coordinates of
Rr442232 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29391582
MGI SNP Detail		 Chr11:6018177 Cpgi2552 94 bp proximal
Gm74282 within coordinates of
Rr442232 within coordinates of
 SNP C/G G C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257490215
MGI SNP Detail		 Chr11:6018250 Cpgi2552 21 bp proximal
Gm74282 within coordinates of
Rr442232 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226290687
MGI SNP Detail		 Chr11:6018254 Cpgi2552 17 bp proximal
Gm74282 within coordinates of
Rr442232 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251987115
MGI SNP Detail		 Chr11:6018292 Cpgi2552 within coordinates of
Gm74282 within coordinates of
Rr442232 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212647888
MGI SNP Detail		 Chr11:6018359 Cpgi2552 within coordinates of
Gm74282 within coordinates of
Rr442232 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs585457748
MGI SNP Detail		 Chr11:6018431 Cpgi2552 within coordinates of
Gm74282 within coordinates of
Rr442232 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs233787052
MGI SNP Detail		 Chr11:6018519 Cpgi2552 59 bp distal
Gm74282 within coordinates of
Rr442232 within coordinates of
 SNP A/C C C C A A C C C C C C C C C C C C C C C C C C C C C C C C C C C A A A C C A C C C A C C C C C C C C C
rs579425973
MGI SNP Detail		 Chr11:6018591 Cpgi2552 131 bp distal
Gm74282 within coordinates of
Rr442233 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs219435864
MGI SNP Detail		 Chr11:6018608 Cpgi2552 148 bp distal
Gm74282 within coordinates of
Rr442233 within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs233071769
MGI SNP Detail		 Chr11:6018864 Cpgi2552 404 bp distal
Gm74282 within coordinates of
Rr442233 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252297035
MGI SNP Detail		 Chr11:6018926 Cpgi2552 466 bp distal
Gm74282 within coordinates of
Rr442233 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213982160
MGI SNP Detail		 Chr11:6018958 Cpgi2552 498 bp distal
Gm74282 within coordinates of
Rr442233 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232225789
MGI SNP Detail		 Chr11:6018979 Cpgi2552 519 bp distal
Gm74282 within coordinates of
Rr442233 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs260952680
MGI SNP Detail		 Chr11:6018980 Cpgi2552 520 bp distal
Gm74282 within coordinates of
Rr442233 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs221891479
MGI SNP Detail		 Chr11:6018992 Cpgi2552 532 bp distal
Gm74282 within coordinates of
Rr442233 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250390474
MGI SNP Detail		 Chr11:6019033 Cpgi2552 573 bp distal
Gm74282 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260986281
MGI SNP Detail		 Chr11:6019052 Cpgi2552 592 bp distal
Gm74282 within coordinates of
Rr442234 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs220930940
MGI SNP Detail		 Chr11:6019144 Cpgi2552 684 bp distal
Rr442234 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241127573
MGI SNP Detail		 Chr11:6019220 Cpgi2552 760 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29458410
MGI SNP Detail		 Chr11:6019278 Cpgi2552 818 bp distal
 SNP A/G A G G
rs257545985
MGI SNP Detail		 Chr11:6019351 Cpgi2552 891 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226531688
MGI SNP Detail		 Chr11:6019361 Cpgi2552 901 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs240847161
MGI SNP Detail		 Chr11:6019370 Cpgi2552 910 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs264779016
MGI SNP Detail		 Chr11:6019380 Cpgi2552 920 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232776843
MGI SNP Detail		 Chr11:6019433 Cpgi2552 973 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259921539
MGI SNP Detail		 Chr11:6019492 Cpgi2552 1032 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214940604
MGI SNP Detail		 Chr11:6019539 Cpgi2552 1079 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227115548
MGI SNP Detail		 Chr11:6019583 Cpgi2552 1123 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs584009484
MGI SNP Detail		 Chr11:6019620 Cpgi2552 1160 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs246212471
MGI SNP Detail		 Chr11:6019624 Cpgi2552 1164 bp distal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs585909000
MGI SNP Detail		 Chr11:6019631 Cpgi2552 1171 bp distal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs214036738
MGI SNP Detail		 Chr11:6019706 Cpgi2552 1246 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239429752
MGI SNP Detail		 Chr11:6019822 Cpgi2552 1362 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255818501
MGI SNP Detail		 Chr11:6019825 Cpgi2552 1365 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213357331
MGI SNP Detail		 Chr11:6019848 Cpgi2552 1388 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239540148
MGI SNP Detail		 Chr11:6019994 Cpgi2552 1534 bp distal
 SNP A/G G G G A A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A A G G G A G G G A G G G G G G G G G
rs264324229
MGI SNP Detail		 Chr11:6020009 Cpgi2552 1549 bp distal
 SNP A/T T T T A A T T T T T T T T T T T T T T T T T T T T T T T T T T T T A A A T T T A T T T A T T T T A T T T T
rs221151233
MGI SNP Detail		 Chr11:6020070 Cpgi2552 1610 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241197776
MGI SNP Detail		 Chr11:6020076 Cpgi2552 1616 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251099395
MGI SNP Detail		 Chr11:6020093 Cpgi2552 1633 bp distal
 SNP A/G G G G G G G G G G G A A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs220122481
MGI SNP Detail		 Chr11:6020126 Cpgi2552 1666 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs45732869
MGI SNP Detail		 Chr11:6020132 Cpgi2552 1672 bp distal
 SNP A A
rs261915955
MGI SNP Detail		 Chr11:6020162 Cpgi2552 1702 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs233690900
MGI SNP Detail		 Chr11:6020208 Cpgi2552 1748 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T T T T T T T T T T C T T T T
rs248031912
MGI SNP Detail		 Chr11:6020234 Cpgi2552 1774 bp distal
 SNP C/T C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs257006775
MGI SNP Detail		 Chr11:6020267 Cpgi2552 1807 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29423401
MGI SNP Detail		 Chr11:6020365 Cpgi2552 1905 bp distal
 SNP C/T T C T T
rs246266108
MGI SNP Detail		 Chr11:6020373 Cpgi2552 1913 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255716611
MGI SNP Detail		 Chr11:6020401 Cpgi2552 1941 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs231124016
MGI SNP Detail		 Chr11:6020423 Cpgi2552 1963 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 74 of 74
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory