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Mouse SNP Summary
Symbol
Name
ID
Cpgi3142
CpG island 3142
MGI:5668245

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Showing SNP(s) 1 - 73 of 73

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583461206
MGI SNP Detail
Chr11:69570124 Cpgi3142 1969 bp proximal
Senp3 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232386500
MGI SNP Detail
Chr11:69570271 Cpgi3142 1822 bp proximal
Senp3 within coordinates of
SNP A/G G G G A G G G G G A G G G G G G G G G G G A G G G G G G A G G G G G G A G A A G G G G G G G G G G G G G G
rs253310999
MGI SNP Detail
Chr11:69570323 Cpgi3142 1770 bp proximal
Senp3 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214372807
MGI SNP Detail
Chr11:69570366 Cpgi3142 1727 bp proximal
Senp3 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225974128
MGI SNP Detail
Chr11:69570377 Cpgi3142 1716 bp proximal
Senp3 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs242156626
MGI SNP Detail
Chr11:69570417 Cpgi3142 1676 bp proximal
Senp3 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212870382
MGI SNP Detail
Chr11:69570428 Cpgi3142 1665 bp proximal
Senp3 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234282462
MGI SNP Detail
Chr11:69570456 Cpgi3142 1637 bp proximal
Senp3 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264058235
MGI SNP Detail
Chr11:69570477 Cpgi3142 1616 bp proximal
Senp3 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221485582
MGI SNP Detail
Chr11:69570547 Cpgi3142 1546 bp proximal
Senp3 within coordinates of
SNP C/T C T
rs240533767
MGI SNP Detail
Chr11:69570610 Cpgi3142 1483 bp proximal
Senp3 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs256877191
MGI SNP Detail
Chr11:69570613 Cpgi3142 1480 bp proximal
Senp3 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220026815
MGI SNP Detail
Chr11:69570651 Cpgi3142 1442 bp proximal
Senp3 within coordinates of
SNP G/T G G G T G G G G G T G G G G G G G G G G G T G G G G G G T G G G G G G T G T T G G G G G G G G G G G G G G
rs239996457
MGI SNP Detail
Chr11:69570675 Cpgi3142 1418 bp proximal
Senp3 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249888354
MGI SNP Detail
Chr11:69570686 Cpgi3142 1407 bp proximal
Senp3 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235844668
MGI SNP Detail
Chr11:69570694 Cpgi3142 1399 bp proximal
Senp3 within coordinates of
SNP A/G G A
rs51461032
MGI SNP Detail
Chr11:69570821 Cpgi3142 1272 bp proximal
Senp3 within coordinates of
SNP A/T A A T A A A A A T A A A A A A A A A A A T A A A A A A A A A A A A T A T T A A A A A A A A A A A A A
rs255488370
MGI SNP Detail
Chr11:69570945 Cpgi3142 1148 bp proximal
Senp3 within coordinates of
SNP C/T C T
rs581604542
MGI SNP Detail
Chr11:69571111 Cpgi3142 982 bp proximal
Senp3 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs224305465
MGI SNP Detail
Chr11:69571198 Cpgi3142 895 bp proximal
Senp3 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249151449
MGI SNP Detail
Chr11:69571625 Cpgi3142 468 bp proximal
Senp3 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs50043559
MGI SNP Detail
Chr11:69571735 Cpgi3142 358 bp proximal
Senp3 within coordinates of
SNP A/G G G A G A
rs226210276
MGI SNP Detail
Chr11:69571747 Cpgi3142 346 bp proximal
Senp3 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242241848
MGI SNP Detail
Chr11:69571750 Cpgi3142 343 bp proximal
Senp3 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs26908302
MGI SNP Detail
Chr11:69571754 Cpgi3142 339 bp proximal
Senp3 within coordinates of
SNP G/T G G G G G G G T T G G G G T T G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234090894
MGI SNP Detail
Chr11:69571783 Cpgi3142 310 bp proximal
Senp3 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs254707625
MGI SNP Detail
Chr11:69571970 Cpgi3142 123 bp proximal
Senp3 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs26908301
MGI SNP Detail
Chr11:69572005 Cpgi3142 88 bp proximal
Senp3 within coordinates of
SNP C/T T T C T T T C C T C C C T C C T
rs238364576
MGI SNP Detail
Chr11:69572080 Cpgi3142 13 bp proximal
Senp3 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs584464164
MGI SNP Detail
Chr11:69572123 Cpgi3142 within coordinates of
Senp3 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs254772303
MGI SNP Detail
Chr11:69572173 Cpgi3142 within coordinates of
Senp3 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs26908300
MGI SNP Detail
Chr11:69572253 Cpgi3142 within coordinates of
Senp3 within coordinates of
SNP G/T G G G G G G G G T G G G T G G T G
rs229740663
MGI SNP Detail
Chr11:69572302 Cpgi3142 within coordinates of
Senp3 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs26908299
MGI SNP Detail
Chr11:69572385 Cpgi3142 within coordinates of
Senp3 within coordinates of
SNP A/G A A G A A A G G A G G G A G G A
rs48394324
MGI SNP Detail
Chr11:69572589 Cpgi3142 within coordinates of
Senp3 within coordinates of
SNP A/G A G
rs242381198
MGI SNP Detail
Chr11:69572786 Cpgi3142 within coordinates of
Senp3 within coordinates of
Tssr108778 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261189012
MGI SNP Detail
Chr11:69572889 Cpgi3142 within coordinates of
Senp3 within coordinates of
Tnfsf13os within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs224623000
MGI SNP Detail
Chr11:69573061 Cpgi3142 within coordinates of
Tnfsf13os within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs26908298
MGI SNP Detail
Chr11:69573085 Cpgi3142 within coordinates of
Tnfsf13os within coordinates of
SNP A/G A G A A A A G G A G G G A G A
rs26908297
MGI SNP Detail
Chr11:69573091 Cpgi3142 within coordinates of
Tnfsf13os within coordinates of
SNP A/G G G G G G G G A G G G A G A A G
rs220223240
MGI SNP Detail
Chr11:69573116 Cpgi3142 within coordinates of
Tnfsf13os within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs52205750
MGI SNP Detail
Chr11:69573158 Cpgi3142 39 bp distal
Tnfsf13os within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T T T C C T C C C C C T C C C C C C T C C C C T C T C C C C C
rs584364518
MGI SNP Detail
Chr11:69573261 Cpgi3142 142 bp distal
Tnfsf13os within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs254539533
MGI SNP Detail
Chr11:69573353 Cpgi3142 234 bp distal
Tnfsf13os within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs26908296
MGI SNP Detail
Chr11:69573366 Cpgi3142 247 bp distal
Tnfsf13os within coordinates of
SNP A/G G G G G G G A G G G G G G G
rs257116486
MGI SNP Detail
Chr11:69573476 Cpgi3142 357 bp distal
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/C A C
rs233016390
MGI SNP Detail
Chr11:69573492 Cpgi3142 373 bp distal
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs259971723
MGI SNP Detail
Chr11:69573534 Cpgi3142 415 bp distal
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs227446650
MGI SNP Detail
Chr11:69573549 Cpgi3142 430 bp distal
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/G G A
rs233059251
MGI SNP Detail
Chr11:69573595 Cpgi3142 476 bp distal
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244735739
MGI SNP Detail
Chr11:69573844 Cpgi3142 725 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs51676734
MGI SNP Detail
Chr11:69573868 Cpgi3142 749 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/G A G
rs50610648
MGI SNP Detail
Chr11:69574039 Cpgi3142 920 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/G A G A G
rs48805001
MGI SNP Detail
Chr11:69574056 Cpgi3142 937 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/T A T A T
rs217786954
MGI SNP Detail
Chr11:69574245 Cpgi3142 1126 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs26908295
MGI SNP Detail
Chr11:69574359 Cpgi3142 1240 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP C/T T T T T T C C T T T C T C C T
rs264345962
MGI SNP Detail
Chr11:69574428 Cpgi3142 1309 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs48931329
MGI SNP Detail
Chr11:69574472 Cpgi3142 1353 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/C A A C A C
rs46508261
MGI SNP Detail
Chr11:69574473 Cpgi3142 1354 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP C/T T T C T C
rs249810883
MGI SNP Detail
Chr11:69574477 Cpgi3142 1358 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220074184
MGI SNP Detail
Chr11:69574530 Cpgi3142 1411 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235906726
MGI SNP Detail
Chr11:69574551 Cpgi3142 1432 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs249076939
MGI SNP Detail
Chr11:69574553 Cpgi3142 1434 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs26908294
MGI SNP Detail
Chr11:69574642 Cpgi3142 1523 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/C A A C A A A C C A C A A C A
rs26908293
MGI SNP Detail
Chr11:69574648 Cpgi3142 1529 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP G/T T T T T T T G T T T T G G T
rs578689239
MGI SNP Detail
Chr11:69574661 Cpgi3142 1542 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs265467501
MGI SNP Detail
Chr11:69574815 Cpgi3142 1696 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs26908292
MGI SNP Detail
Chr11:69574836 Cpgi3142 1717 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP C/T C C C C C C T T C C C T T C
rs51757594
MGI SNP Detail
Chr11:69574849 Cpgi3142 1730 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP C/T C C T C T
rs49509810
MGI SNP Detail
Chr11:69574931 Cpgi3142 1812 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP G G G G G
rs582286534
MGI SNP Detail
Chr11:69574944 Cpgi3142 1825 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs223928924
MGI SNP Detail
Chr11:69574952 Cpgi3142 1833 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs26908291
MGI SNP Detail
Chr11:69575008 Cpgi3142 1889 bp distal
Tnfsf13 within coordinates of
Tnfsf13os within coordinates of
Tnfsfm13 within coordinates of
SNP A/G G G G G G G G A G G G A G A A G
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Showing SNP(s) 1 - 73 of 73

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory

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