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Mouse SNP Summary
Symbol
Name
ID 		Cpgi3625
CpG island 3625
MGI:5668727

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218207831
MGI SNP Detail		 Chr11:96092138 Cpgi3625 1946 bp proximal
Gm30134 within coordinates of
Rr455321 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6290968
MGI SNP Detail		 Chr11:96092141 Cpgi3625 1943 bp proximal
Gm30134 within coordinates of
Rr455321 within coordinates of
 SNP C/T C C T T C C C T C C T C T
rs6291453
MGI SNP Detail		 Chr11:96092213 Cpgi3625 1871 bp proximal
Gm30134 within coordinates of
Rr455321 within coordinates of
 SNP C/T C C T C T C
rs220270240
MGI SNP Detail		 Chr11:96092299 Cpgi3625 1785 bp proximal
Gm30134 within coordinates of
Rr455321 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs6291948
MGI SNP Detail		 Chr11:96092310 Cpgi3625 1774 bp proximal
Gm30134 within coordinates of
 SNP C/T C C T C T C
rs250306268
MGI SNP Detail		 Chr11:96092391 Cpgi3625 1693 bp proximal
Gm30134 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs217916041
MGI SNP Detail		 Chr11:96092410 Cpgi3625 1674 bp proximal
Gm30134 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs29466286
MGI SNP Detail		 Chr11:96092418 Cpgi3625 1666 bp proximal
Gm30134 within coordinates of
 SNP C/T C T C C
rs263627137
MGI SNP Detail		 Chr11:96092419 Cpgi3625 1665 bp proximal
Gm30134 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27045591
MGI SNP Detail		 Chr11:96092484 Cpgi3625 1600 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP A/T A T T A A A T T
rs249595614
MGI SNP Detail		 Chr11:96092486 Cpgi3625 1598 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs29388877
MGI SNP Detail		 Chr11:96092577 Cpgi3625 1507 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP C/T T C T T
rs257610596
MGI SNP Detail		 Chr11:96092625 Cpgi3625 1459 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226461001
MGI SNP Detail		 Chr11:96092644 Cpgi3625 1440 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs237812648
MGI SNP Detail		 Chr11:96092651 Cpgi3625 1433 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254879496
MGI SNP Detail		 Chr11:96092663 Cpgi3625 1421 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29403432
MGI SNP Detail		 Chr11:96092675 Cpgi3625 1409 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP C/T T C T T
rs29418438
MGI SNP Detail		 Chr11:96092765 Cpgi3625 1319 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP A/T A T A
rs51418007
MGI SNP Detail		 Chr11:96092810 Cpgi3625 1274 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP A/G A G
rs232415838
MGI SNP Detail		 Chr11:96092824 Cpgi3625 1260 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs581452073
MGI SNP Detail		 Chr11:96092838 Cpgi3625 1246 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs585066349
MGI SNP Detail		 Chr11:96092857 Cpgi3625 1227 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP C/T C C C T T C C C C T C C C C C C C C C T T C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs579058861
MGI SNP Detail		 Chr11:96092859 Cpgi3625 1225 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP A/C/T C C C A A C C C C A C C C C C C C C C A A C A C C C C A C C C C C A C C C C C C A C C C C C C C T C C C C
rs582447175
MGI SNP Detail		 Chr11:96092862 Cpgi3625 1222 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP C/T T T T C C T T T T C T T T T T T T T T C C T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs49274808
MGI SNP Detail		 Chr11:96092917 Cpgi3625 1167 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP C/T T T T C C T T T T C T T T T T T T T T C C T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs46571354
MGI SNP Detail		 Chr11:96092935 Cpgi3625 1149 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP C/T C C C T T C C C C T C C C C C C C C C T T C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs46090705
MGI SNP Detail		 Chr11:96092963 Cpgi3625 1121 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP A/G G G G A A G G G G A G G G G G G G G G G A G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs250296043
MGI SNP Detail		 Chr11:96092990 Cpgi3625 1094 bp proximal
Gm30134 within coordinates of
Rr455322 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs48435560
MGI SNP Detail		 Chr11:96093054 Cpgi3625 1030 bp proximal
Gm30134 within coordinates of
 SNP A/G A G A
rs585873313
MGI SNP Detail		 Chr11:96093156 Cpgi3625 928 bp proximal
Gm30134 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A C
rs578690475
MGI SNP Detail		 Chr11:96093167 Cpgi3625 917 bp proximal
Gm30134 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs52129402
MGI SNP Detail		 Chr11:96093168 Cpgi3625 916 bp proximal
Gm30134 within coordinates of
 SNP C C
rs108334361
MGI SNP Detail		 Chr11:96093169 Cpgi3625 915 bp proximal
Gm30134 within coordinates of
 SNP A A
rs242759278
MGI SNP Detail		 Chr11:96093230 Cpgi3625 854 bp proximal
Gm30134 within coordinates of
Rr455323 within coordinates of
 SNP C/T C C C T T C C C C T C C C C C C C C C C T C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs260074451
MGI SNP Detail		 Chr11:96093232 Cpgi3625 852 bp proximal
Gm30134 within coordinates of
Rr455323 within coordinates of
 SNP C/T T T T C C T T T T C T T T T T T T T T C C T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs224926697
MGI SNP Detail		 Chr11:96093233 Cpgi3625 851 bp proximal
Gm30134 within coordinates of
Rr455323 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs244732510
MGI SNP Detail		 Chr11:96093275 Cpgi3625 809 bp proximal
Gm30134 within coordinates of
Rr455323 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250177863
MGI SNP Detail		 Chr11:96093335 Cpgi3625 749 bp proximal
Gm30134 within coordinates of
Rr455323 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220332501
MGI SNP Detail		 Chr11:96093351 Cpgi3625 733 bp proximal
Gm30134 within coordinates of
Rr455323 within coordinates of
 SNP C/G/T C C C G G C C C C G C C C C C C C C C T G C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs238002002
MGI SNP Detail		 Chr11:96093354 Cpgi3625 730 bp proximal
Gm30134 within coordinates of
Rr455323 within coordinates of
 SNP A/G G G G A A G G G G A G G G G G G G G G G A G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs254867393
MGI SNP Detail		 Chr11:96093460 Cpgi3625 624 bp proximal
Gm30134 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs228046087
MGI SNP Detail		 Chr11:96093484 Cpgi3625 600 bp proximal
Gm30134 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs251757041
MGI SNP Detail		 Chr11:96093488 Cpgi3625 596 bp proximal
Gm30134 within coordinates of
 SNP C/T C C C T T C C C C T C C C C C C C C C T C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs264094602
MGI SNP Detail		 Chr11:96093507 Cpgi3625 577 bp proximal
Gm30134 within coordinates of
 SNP A/G G G G A A G G G G A G G G G G G G G G G A G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs233314957
MGI SNP Detail		 Chr11:96093524 Cpgi3625 560 bp proximal
Gm30134 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246510636
MGI SNP Detail		 Chr11:96093539 Cpgi3625 545 bp proximal
Gm30134 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214508033
MGI SNP Detail		 Chr11:96093542 Cpgi3625 542 bp proximal
Gm30134 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225735886
MGI SNP Detail		 Chr11:96093558 Cpgi3625 526 bp proximal
Gm30134 within coordinates of
 SNP A/T A A A T T A A A A T A A A A A A A A A A T A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs244281006
MGI SNP Detail		 Chr11:96093611 Cpgi3625 473 bp proximal
Gm30134 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs211920490
MGI SNP Detail		 Chr11:96093621 Cpgi3625 463 bp proximal
Gm30134 within coordinates of
 SNP A/G G G G A A G G G G A G G G G G G G G G A A G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27045590
MGI SNP Detail		 Chr11:96093691 Cpgi3625 393 bp proximal
Gm30134 within coordinates of
Rr455324 within coordinates of
 SNP A/C A A C C A A
rs263696017
MGI SNP Detail		 Chr11:96093785 Cpgi3625 299 bp proximal
Gm30134 within coordinates of
Rr455324 within coordinates of
 SNP A/C A A A C C A A A A C A A A A A A A A C A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A
rs216360505
MGI SNP Detail		 Chr11:96093786 Cpgi3625 298 bp proximal
Gm30134 within coordinates of
Rr455324 within coordinates of
 SNP A/T A A A T T A A A A T A A A A A A A A T T A T A A A A T A A A A A T A A A A A A A A A A A A A A A A A
rs239702597
MGI SNP Detail		 Chr11:96093801 Cpgi3625 283 bp proximal
Gm30134 within coordinates of
Rr455324 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs250167915
MGI SNP Detail		 Chr11:96093909 Cpgi3625 175 bp proximal
Gm30134 within coordinates of
Rr455324 within coordinates of
 SNP C/T T T T C C T T T T C T T T T T T T T T T C T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs219134821
MGI SNP Detail		 Chr11:96093968 Cpgi3625 116 bp proximal
Gm30134 within coordinates of
Rr455324 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231734725
MGI SNP Detail		 Chr11:96094043 Cpgi3625 41 bp proximal
Gm30134 within coordinates of
Rr455324 within coordinates of
 SNP A/C A A A C C A A A A C A A A A A A A A A A C A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs249316432
MGI SNP Detail		 Chr11:96094049 Cpgi3625 35 bp proximal
Gm30134 within coordinates of
Rr455324 within coordinates of
 SNP A/C A A A C C A A A A C A A A A A A A A A A C A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs52379196
MGI SNP Detail		 Chr11:96094060 Cpgi3625 24 bp proximal
Gm30134 within coordinates of
Rr455324 within coordinates of
 SNP A A
rs248579305
MGI SNP Detail		 Chr11:96094090 Cpgi3625 within coordinates of
Gm30134 within coordinates of
Rr455324 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs52167291
MGI SNP Detail		 Chr11:96094105 Cpgi3625 within coordinates of
Gm30134 within coordinates of
Rr455324 within coordinates of
 SNP A A A
rs225134832
MGI SNP Detail		 Chr11:96094203 Cpgi3625 within coordinates of
Gm30134 within coordinates of
Rr455324 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs45781850
MGI SNP Detail		 Chr11:96094237 Cpgi3625 within coordinates of
Gm30134 within coordinates of
Rr455324 within coordinates of
 SNP A/G A G A G
rs258382353
MGI SNP Detail		 Chr11:96094310 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Gm30134 within coordinates of
Rr455325 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225882160
MGI SNP Detail		 Chr11:96094331 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Gm30134 within coordinates of
Rr455325 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47997141
MGI SNP Detail		 Chr11:96094374 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Gm30134 within coordinates of
Rr455325 within coordinates of
 SNP T T T
rs261463075
MGI SNP Detail		 Chr11:96094387 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Gm30134 within coordinates of
Rr455325 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs234963104
MGI SNP Detail		 Chr11:96094393 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Gm30134 within coordinates of
Rr455325 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253768815
MGI SNP Detail		 Chr11:96094402 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Gm30134 within coordinates of
Rr455325 within coordinates of
 SNP A/G G G G A A G G G G A G G G G G G G G G A A G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs217068389
MGI SNP Detail		 Chr11:96094432 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Gm30134 within coordinates of
Rr455325 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs27045589
MGI SNP Detail		 Chr11:96094451 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Gm30134 within coordinates of
Rr455325 within coordinates of
 SNP A/T A A T A A
rs244394017
MGI SNP Detail		 Chr11:96094478 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs213337976
MGI SNP Detail		 Chr11:96094519 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs230396377
MGI SNP Detail		 Chr11:96094521 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/T T T T C C T T T T C T T T T T T T T T C C T C T T T T C C T T T T C T T T T T T C T T T T T T T C T T T T
rs247878310
MGI SNP Detail		 Chr11:96094528 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220854700
MGI SNP Detail		 Chr11:96094546 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP G/T G G G T T G G G G T G G G G G G G G G T T G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs243545147
MGI SNP Detail		 Chr11:96094616 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/T C C C T T C C C C T C C C C C C C C C T T C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs260480235
MGI SNP Detail		 Chr11:96094620 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/T C C C T T C C C C T C C C C C C C C C T T C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs225568564
MGI SNP Detail		 Chr11:96094641 Cpgi3625 within coordinates of
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP A/G G G G A A G G G G A G G G G G G G G G A A G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs48964236
MGI SNP Detail		 Chr11:96094740 Cpgi3625 77 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/G G G G C C G G G G C G G G G G G G G G C C G C G G G G C G G G G G C G G G G G G C G G G G G G G C G G G G
rs258471544
MGI SNP Detail		 Chr11:96094772 Cpgi3625 109 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27045588
MGI SNP Detail		 Chr11:96094819 Cpgi3625 156 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/T C C C T C C C
rs50034734
MGI SNP Detail		 Chr11:96094919 Cpgi3625 256 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP A/T T A
rs49003250
MGI SNP Detail		 Chr11:96094922 Cpgi3625 259 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/G C G
rs49071394
MGI SNP Detail		 Chr11:96094941 Cpgi3625 278 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/T T C
rs27045587
MGI SNP Detail		 Chr11:96094967 Cpgi3625 304 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP G/T T T G G G T T
rs226761985
MGI SNP Detail		 Chr11:96095002 Cpgi3625 339 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs50150856
MGI SNP Detail		 Chr11:96095027 Cpgi3625 364 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP A/G G A
rs213397017
MGI SNP Detail		 Chr11:96095032 Cpgi3625 369 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/T C C C T T C C C C T C C C C C C C C C T T C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs48185904
MGI SNP Detail		 Chr11:96095033 Cpgi3625 370 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP G/T G T
rs49890340
MGI SNP Detail		 Chr11:96095129 Cpgi3625 466 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP A/T T T T A A T T T T A T T T T T T T T T A A T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs218753318
MGI SNP Detail		 Chr11:96095165 Cpgi3625 502 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs47229692
MGI SNP Detail		 Chr11:96095186 Cpgi3625 523 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP G/T T T T G G T T T T G T T T T T T T T T G G T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs263997482
MGI SNP Detail		 Chr11:96095224 Cpgi3625 561 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs49536821
MGI SNP Detail		 Chr11:96095279 Cpgi3625 616 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/T T T T C C T T T T C T T T T T T T T T C C T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs27045586
MGI SNP Detail		 Chr11:96095291 Cpgi3625 628 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP A/G A A A G A A A
rs27045585
MGI SNP Detail		 Chr11:96095444 Cpgi3625 781 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP G/T T T G T G T G T
rs585109127
MGI SNP Detail		 Chr11:96095479 Cpgi3625 816 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs219683251
MGI SNP Detail		 Chr11:96095493 Cpgi3625 830 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238281035
MGI SNP Detail		 Chr11:96095498 Cpgi3625 835 bp distal
Gm11538 within coordinates of
Rr455325 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
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Showing SNP(s) 1 - 100 of 144
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory
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