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Mouse SNP Summary
Symbol
Name
ID 		Cpgi3768
CpG island 3768
MGI:5668870

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Showing SNP(s) 1 - 52 of 52

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252066820
MGI SNP Detail		 Chr11:98657122 Cpgi3768 1919 bp proximal
Rr456271 within coordinates of
Thra within coordinates of
 SNP A/G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G A G G A G G G G G G
rs582601008
MGI SNP Detail		 Chr11:98657259 Cpgi3768 1782 bp proximal
Gm57390 within coordinates of
Thra within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs218131564
MGI SNP Detail		 Chr11:98657418 Cpgi3768 1623 bp proximal
Gm57390 within coordinates of
Thra within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs27041032
MGI SNP Detail		 Chr11:98657463 Cpgi3768 1578 bp proximal
Gm57390 within coordinates of
Thra within coordinates of
 SNP C/T C C C C C C C C C C C C T C
rs263675968
MGI SNP Detail		 Chr11:98657681 Cpgi3768 1360 bp proximal
Gm57390 within coordinates of
Thra within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226932266
MGI SNP Detail		 Chr11:98657820 Cpgi3768 1221 bp proximal
Gm57390 within coordinates of
Thra within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs584790428
MGI SNP Detail		 Chr11:98658173 Cpgi3768 868 bp proximal
Gm57390 within coordinates of
Thra within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs579348855
MGI SNP Detail		 Chr11:98658206 Cpgi3768 835 bp proximal
Gm57390 within coordinates of
Thra within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs581866788
MGI SNP Detail		 Chr11:98658207 Cpgi3768 834 bp proximal
Gm57390 within coordinates of
Thra within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs47268501
MGI SNP Detail		 Chr11:98658217 Cpgi3768 824 bp proximal
Gm57390 within coordinates of
Thra within coordinates of
 SNP C/T C T
rs258208285
MGI SNP Detail		 Chr11:98658325 Cpgi3768 716 bp proximal
Gm57390 within coordinates of
Thra within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs219466083
MGI SNP Detail		 Chr11:98658684 Cpgi3768 357 bp proximal
Thra within coordinates of
 SNP A/C C C C C C C C C C C C C C C C A C C C C A C C C C A C C C C C A C C C C C C C C C C C C
rs238429011
MGI SNP Detail		 Chr11:98658685 Cpgi3768 356 bp proximal
Thra within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs233087842
MGI SNP Detail		 Chr11:98658686 Cpgi3768 355 bp proximal
Thra within coordinates of
 SNP A/C C A
rs229671772
MGI SNP Detail		 Chr11:98658742 Cpgi3768 299 bp proximal
Thra within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs254189585
MGI SNP Detail		 Chr11:98658744 Cpgi3768 297 bp proximal
Thra within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs266203322
MGI SNP Detail		 Chr11:98658828 Cpgi3768 213 bp proximal
Nr1d1 within coordinates of
Thra within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233665142
MGI SNP Detail		 Chr11:98659368 Cpgi3768 within coordinates of
Nr1d1 within coordinates of
Thra within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs254088376
MGI SNP Detail		 Chr11:98659372 Cpgi3768 within coordinates of
Nr1d1 within coordinates of
Thra within coordinates of
 SNP A/G G A
rs27041031
MGI SNP Detail		 Chr11:98659426 Cpgi3768 within coordinates of
Nr1d1 within coordinates of
Thra within coordinates of
 SNP A/G A A G A G A A G
rs215680573
MGI SNP Detail		 Chr11:98659482 Cpgi3768 within coordinates of
Nr1d1 within coordinates of
Thra within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225479476
MGI SNP Detail		 Chr11:98659781 Cpgi3768 227 bp distal
Nr1d1 within coordinates of
Thra within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27041030
MGI SNP Detail		 Chr11:98659833 Cpgi3768 279 bp distal
Nr1d1 within coordinates of
 SNP C/T C C C C C C C C C C C C T
rs27041029
MGI SNP Detail		 Chr11:98659972 Cpgi3768 418 bp distal
Nr1d1 within coordinates of
 SNP C/T C C C C C C T C C C C C C C C
rs211887638
MGI SNP Detail		 Chr11:98659996 Cpgi3768 442 bp distal
Nr1d1 within coordinates of
 SNP A/G G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237193313
MGI SNP Detail		 Chr11:98660117 Cpgi3768 563 bp distal
Nr1d1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs260157132
MGI SNP Detail		 Chr11:98660151 Cpgi3768 597 bp distal
Nr1d1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218907736
MGI SNP Detail		 Chr11:98660187 Cpgi3768 633 bp distal
Nr1d1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27041028
MGI SNP Detail		 Chr11:98660392 Cpgi3768 838 bp distal
Nr1d1 within coordinates of
 SNP C/T C C C C C C C C C C T C C C
rs237730929
MGI SNP Detail		 Chr11:98660407 Cpgi3768 853 bp distal
Nr1d1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252129654
MGI SNP Detail		 Chr11:98660430 Cpgi3768 876 bp distal
Nr1d1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219509452
MGI SNP Detail		 Chr11:98660464 Cpgi3768 910 bp distal
Nr1d1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27041027
MGI SNP Detail		 Chr11:98660486 Cpgi3768 932 bp distal
Nr1d1 within coordinates of
 SNP C/G G C C G G C C G G C C C G C
rs27041026
MGI SNP Detail		 Chr11:98660523 Cpgi3768 969 bp distal
Nr1d1 within coordinates of
 SNP A/G G G G G G G A G G G G G G G
rs248190577
MGI SNP Detail		 Chr11:98660622 Cpgi3768 1068 bp distal
Nr1d1 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs585530642
MGI SNP Detail		 Chr11:98660709 Cpgi3768 1155 bp distal
Nr1d1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs222123365
MGI SNP Detail		 Chr11:98660741 Cpgi3768 1187 bp distal
Nr1d1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27041025
MGI SNP Detail		 Chr11:98660768 Cpgi3768 1214 bp distal
Nr1d1 within coordinates of
 SNP A/G A A A A A G A A A A A A A
rs264569198
MGI SNP Detail		 Chr11:98660834 Cpgi3768 1280 bp distal
Nr1d1 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs232483664
MGI SNP Detail		 Chr11:98660835 Cpgi3768 1281 bp distal
Nr1d1 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs241500980
MGI SNP Detail		 Chr11:98660850 Cpgi3768 1296 bp distal
Nr1d1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259739087
MGI SNP Detail		 Chr11:98660891 Cpgi3768 1337 bp distal
Nr1d1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225492757
MGI SNP Detail		 Chr11:98660961 Cpgi3768 1407 bp distal
Nr1d1 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs245448938
MGI SNP Detail		 Chr11:98660971 Cpgi3768 1417 bp distal
Nr1d1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs211708777
MGI SNP Detail		 Chr11:98660984 Cpgi3768 1430 bp distal
Nr1d1 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs579774327
MGI SNP Detail		 Chr11:98660992 Cpgi3768 1438 bp distal
Nr1d1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs27041024
MGI SNP Detail		 Chr11:98661042 Cpgi3768 1488 bp distal
Nr1d1 within coordinates of
 SNP C/T C C T C C C C C C C C C C C C
rs27041023
MGI SNP Detail		 Chr11:98661200 Cpgi3768 1646 bp distal
Nr1d1 within coordinates of
 SNP C/T C C C C C C C C C C C C C T C
rs27041022
MGI SNP Detail		 Chr11:98661284 Cpgi3768 1730 bp distal
Nr1d1 within coordinates of
 SNP C/T T T T T T T C T T T T T T T T
rs27041021
MGI SNP Detail		 Chr11:98661308 Cpgi3768 1754 bp distal
Nr1d1 within coordinates of
 SNP A/G A A A A A A G A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239866548
MGI SNP Detail		 Chr11:98661533 Cpgi3768 1979 bp distal
Nr1d1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251842873
MGI SNP Detail		 Chr11:98661536 Cpgi3768 1982 bp distal
Nr1d1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 52 of 52
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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