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Mouse SNP Summary
Symbol
Name
ID 		Cpgi5238
CpG island 5238
MGI:5670340

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Showing SNP(s) 1 - 68 of 68

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs48510762
MGI SNP Detail		 Chr12:119907651 Cpgi5238 1950 bp proximal
 SNP A/G A A G G A G A G G A G A A G G G
rs49625884
MGI SNP Detail		 Chr12:119907919 Cpgi5238 1682 bp proximal
 SNP A/G A G A G G A A A G G A A A A G
rs30923585
MGI SNP Detail		 Chr12:119907960 Cpgi5238 1641 bp proximal
 SNP A/G G A G A A G A G G A A G G G G G A G
rs49318872
MGI SNP Detail		 Chr12:119908033 Cpgi5238 1568 bp proximal
 SNP G/T G T G T T G T G T T G T G T T T
rs229071430
MGI SNP Detail		 Chr12:119908177 Cpgi5238 1424 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs50576171
MGI SNP Detail		 Chr12:119908194 Cpgi5238 1407 bp proximal
 SNP C/G C C C C C C C C C G C C G
rs47574161
MGI SNP Detail		 Chr12:119908272 Cpgi5238 1329 bp proximal
 SNP C/T T T T T T T T T T C T C T
rs229828777
MGI SNP Detail		 Chr12:119908371 Cpgi5238 1230 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs251048813
MGI SNP Detail		 Chr12:119908435 Cpgi5238 1166 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs215648910
MGI SNP Detail		 Chr12:119908438 Cpgi5238 1163 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs46020296
MGI SNP Detail		 Chr12:119908441 Cpgi5238 1160 bp proximal
 SNP A/G A A A A A A G A A A A A A G
rs51206900
MGI SNP Detail		 Chr12:119908480 Cpgi5238 1121 bp proximal
 SNP C/G G G G G G G C G G G G G G G
rs216834318
MGI SNP Detail		 Chr12:119908524 Cpgi5238 1077 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs236594931
MGI SNP Detail		 Chr12:119908547 Cpgi5238 1054 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs262932973
MGI SNP Detail		 Chr12:119908563 Cpgi5238 1038 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216736559
MGI SNP Detail		 Chr12:119908638 Cpgi5238 963 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238190010
MGI SNP Detail		 Chr12:119908731 Cpgi5238 870 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47914545
MGI SNP Detail		 Chr12:119908763 Cpgi5238 838 bp proximal
 SNP A A
rs30821943
MGI SNP Detail		 Chr12:119908798 Cpgi5238 803 bp proximal
 SNP A/G A A G A G G A G A A G G A G A G G
rs30624075
MGI SNP Detail		 Chr12:119908842 Cpgi5238 759 bp proximal
 SNP C/T C T C C
rs252566156
MGI SNP Detail		 Chr12:119908883 Cpgi5238 718 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs222451636
MGI SNP Detail		 Chr12:119908957 Cpgi5238 644 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30771896
MGI SNP Detail		 Chr12:119908994 Cpgi5238 607 bp proximal
 SNP C/T C T T C C T
rs265661725
MGI SNP Detail		 Chr12:119909130 Cpgi5238 471 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31019785
MGI SNP Detail		 Chr12:119909218 Cpgi5238 383 bp proximal
Rr474318 within coordinates of
 SNP C/T C C C T T C T C C T T C C C C T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246513470
MGI SNP Detail		 Chr12:119909272 Cpgi5238 329 bp proximal
Rr474318 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs47491401
MGI SNP Detail		 Chr12:119909346 Cpgi5238 255 bp proximal
Rr474318 within coordinates of
 SNP C/T C C C C C C C C C C T C C T C
rs30909746
MGI SNP Detail		 Chr12:119909363 Cpgi5238 238 bp proximal
Rr474318 within coordinates of
 SNP C/T C C T C T T C T T C T T C T C T T T T
rs47098401
MGI SNP Detail		 Chr12:119909378 Cpgi5238 223 bp proximal
Rr474318 within coordinates of
 SNP A/G A G A A A A A A A A A A G A G
rs244517964
MGI SNP Detail		 Chr12:119909394 Cpgi5238 207 bp proximal
Rr474318 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs216956416
MGI SNP Detail		 Chr12:119909417 Cpgi5238 184 bp proximal
Rr474318 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229485409
MGI SNP Detail		 Chr12:119909496 Cpgi5238 105 bp proximal
Rr474318 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252420522
MGI SNP Detail		 Chr12:119909518 Cpgi5238 83 bp proximal
Rr474318 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs30726658
MGI SNP Detail		 Chr12:119909565 Cpgi5238 36 bp proximal
Rr474318 within coordinates of
Tmem196 within coordinates of
 SNP A/G A G G A
rs217381395
MGI SNP Detail		 Chr12:119909566 Cpgi5238 35 bp proximal
Rr474318 within coordinates of
Tmem196 within coordinates of
 SNP A/G A A A G A G G G G A A G G G G A A A A A G G A A G A A G G A G A A A G G G G G A G G G G A A G A G G G A
rs262512935
MGI SNP Detail		 Chr12:119909745 Cpgi5238 within coordinates of
Rr474318 within coordinates of
Tmem196 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212017300
MGI SNP Detail		 Chr12:119910508 Cpgi5238 23 bp distal
Tmem196 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs230731804
MGI SNP Detail		 Chr12:119910527 Cpgi5238 42 bp distal
Tmem196 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252623662
MGI SNP Detail		 Chr12:119910617 Cpgi5238 132 bp distal
Tmem196 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222526698
MGI SNP Detail		 Chr12:119910680 Cpgi5238 195 bp distal
Tmem196 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs51178490
MGI SNP Detail		 Chr12:119910740 Cpgi5238 255 bp distal
Tmem196 within coordinates of
 SNP A/G G G G G G G A G G G G G G G G
rs221292887
MGI SNP Detail		 Chr12:119911026 Cpgi5238 541 bp distal
Tmem196 within coordinates of
 SNP A/G G A
rs221880589
MGI SNP Detail		 Chr12:119911040 Cpgi5238 555 bp distal
Tmem196 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G
rs52407016
MGI SNP Detail		 Chr12:119911172 Cpgi5238 687 bp distal
Tmem196 within coordinates of
 SNP C/T C C C C C C C C C C T C C T C
rs243733409
MGI SNP Detail		 Chr12:119911309 Cpgi5238 824 bp distal
Tmem196 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs255750461
MGI SNP Detail		 Chr12:119911359 Cpgi5238 874 bp distal
Tmem196 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224557085
MGI SNP Detail		 Chr12:119911397 Cpgi5238 912 bp distal
Tmem196 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238409410
MGI SNP Detail		 Chr12:119911428 Cpgi5238 943 bp distal
Tmem196 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs51991205
MGI SNP Detail		 Chr12:119911461 Cpgi5238 976 bp distal
Tmem196 within coordinates of
 SNP A/C C C C C C C C C C A C C C C
rs260950365
MGI SNP Detail		 Chr12:119911527 Cpgi5238 1042 bp distal
Tmem196 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30539946
MGI SNP Detail		 Chr12:119911533 Cpgi5238 1048 bp distal
Tmem196 within coordinates of
 SNP A/T A A T A T T A T T A T T A T A T T T T
rs257611123
MGI SNP Detail		 Chr12:119911656 Cpgi5238 1171 bp distal
Tmem196 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs230456141
MGI SNP Detail		 Chr12:119911776 Cpgi5238 1291 bp distal
Tmem196 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs30725718
MGI SNP Detail		 Chr12:119911803 Cpgi5238 1318 bp distal
Tmem196 within coordinates of
 SNP A/G A A G A A G
rs212116123
MGI SNP Detail		 Chr12:119911850 Cpgi5238 1365 bp distal
Tmem196 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs230811938
MGI SNP Detail		 Chr12:119911874 Cpgi5238 1389 bp distal
Tmem196 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs246639285
MGI SNP Detail		 Chr12:119911885 Cpgi5238 1400 bp distal
Tmem196 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217308898
MGI SNP Detail		 Chr12:119911910 Cpgi5238 1425 bp distal
Tmem196 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs49042356
MGI SNP Detail		 Chr12:119912057 Cpgi5238 1572 bp distal
Tmem196 within coordinates of
 SNP G/T T T T G
rs263310246
MGI SNP Detail		 Chr12:119912075 Cpgi5238 1590 bp distal
Tmem196 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs51214302
MGI SNP Detail		 Chr12:119912076 Cpgi5238 1591 bp distal
Tmem196 within coordinates of
 SNP A/G A A A G
rs47011612
MGI SNP Detail		 Chr12:119912094 Cpgi5238 1609 bp distal
Tmem196 within coordinates of
 SNP A/G A A G A G G G A G G A G A G G G G
rs249393614
MGI SNP Detail		 Chr12:119912143 Cpgi5238 1658 bp distal
Tmem196 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226627717
MGI SNP Detail		 Chr12:119912273 Cpgi5238 1788 bp distal
Tmem196 within coordinates of
 SNP G/T G T
rs241705136
MGI SNP Detail		 Chr12:119912280 Cpgi5238 1795 bp distal
Tmem196 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T C T T T T T T T T
rs260901474
MGI SNP Detail		 Chr12:119912281 Cpgi5238 1796 bp distal
Tmem196 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs46160501
MGI SNP Detail		 Chr12:119912420 Cpgi5238 1935 bp distal
Tmem196 within coordinates of
 SNP A/T A A A A A A A A A A T A A T A
rs245638531
MGI SNP Detail		 Chr12:119912478 Cpgi5238 1993 bp distal
Tmem196 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 68 of 68
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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