About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Cpgi5568
CpG island 5568
MGI:5670670

<< first < prev1 next > last >>
Showing SNP(s) 1 - 65 of 65

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs585880364
MGI SNP Detail
Chr13:48816388 Cpgi5567 within coordinates of
Cpgi5568 1974 bp proximal
Rr281361 within coordinates of
Tssr119665 within coordinates of
SNP A/G A A A A A A A G A G A A A A A A A A A A
rs579508317
MGI SNP Detail
Chr13:48816515 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1847 bp proximal
Rr281361 within coordinates of
Tssr119667 within coordinates of
SNP C/T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C
rs242160925
MGI SNP Detail
Chr13:48816870 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1492 bp proximal
Rr281361 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs255312864
MGI SNP Detail
Chr13:48816889 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1473 bp proximal
Rr281361 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs219984135
MGI SNP Detail
Chr13:48816893 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1469 bp proximal
Rr281361 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs239102611
MGI SNP Detail
Chr13:48817035 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1327 bp proximal
Rr281361 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs258322930
MGI SNP Detail
Chr13:48817037 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1325 bp proximal
Rr281361 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C A C C C A C C C C C C C C C C C A C C A C C C C
rs228641862
MGI SNP Detail
Chr13:48817107 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1255 bp proximal
Rr281361 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs260351485
MGI SNP Detail
Chr13:48817134 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1228 bp proximal
Rr281361 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261579475
MGI SNP Detail
Chr13:48817140 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1222 bp proximal
Rr281361 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs229268162
MGI SNP Detail
Chr13:48817219 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1143 bp proximal
Rr281361 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251083111
MGI SNP Detail
Chr13:48817301 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1061 bp proximal
Rr281361 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs214759888
MGI SNP Detail
Chr13:48817322 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1040 bp proximal
Rr281361 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234288848
MGI SNP Detail
Chr13:48817323 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1039 bp proximal
Rr281361 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs247495751
MGI SNP Detail
Chr13:48817382 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 980 bp proximal
Rr281361 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216894853
MGI SNP Detail
Chr13:48817407 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 955 bp proximal
Rr281361 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs581756081
MGI SNP Detail
Chr13:48817438 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 924 bp proximal
Rr281361 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs585627169
MGI SNP Detail
Chr13:48817441 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 921 bp proximal
Rr281361 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239284956
MGI SNP Detail
Chr13:48817498 Barx1 within coordinates of
Cpgi5568 864 bp proximal
Rr281361 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T
rs264062907
MGI SNP Detail
Chr13:48817514 Barx1 within coordinates of
Cpgi5568 848 bp proximal
Rr281361 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
rs211751425
MGI SNP Detail
Chr13:48817582 Barx1 within coordinates of
Cpgi5568 780 bp proximal
Rr281361 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C
rs236833616
MGI SNP Detail
Chr13:48817812 Barx1 within coordinates of
Cpgi5568 550 bp proximal
Rr281361 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs249716091
MGI SNP Detail
Chr13:48817940 Barx1 within coordinates of
Cpgi5568 422 bp proximal
Rr281361 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220006559
MGI SNP Detail
Chr13:48818075 Barx1 within coordinates of
Cpgi5568 287 bp proximal
Rr281361 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239139588
MGI SNP Detail
Chr13:48818142 Barx1 within coordinates of
Cpgi5568 220 bp proximal
Rr281361 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251863777
MGI SNP Detail
Chr13:48818345 Barx1 within coordinates of
Cpgi5568 17 bp proximal
Rr281361 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs226012147
MGI SNP Detail
Chr13:48818380 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248523628
MGI SNP Detail
Chr13:48818396 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264687294
MGI SNP Detail
Chr13:48818435 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228930371
MGI SNP Detail
Chr13:48818633 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs238928568
MGI SNP Detail
Chr13:48818687 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258725424
MGI SNP Detail
Chr13:48818823 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs227746696
MGI SNP Detail
Chr13:48818826 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247583317
MGI SNP Detail
Chr13:48818866 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216929838
MGI SNP Detail
Chr13:48818978 Barx1 within coordinates of
Cpgi5568 49 bp distal
Rr281361 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235241940
MGI SNP Detail
Chr13:48819097 Barx1 within coordinates of
Cpgi5568 168 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254531946
MGI SNP Detail
Chr13:48819156 Barx1 within coordinates of
Cpgi5568 227 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs211919006
MGI SNP Detail
Chr13:48819165 Barx1 within coordinates of
Cpgi5568 236 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs235198355
MGI SNP Detail
Chr13:48819171 Barx1 within coordinates of
Cpgi5568 242 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs249364921
MGI SNP Detail
Chr13:48819181 Barx1 within coordinates of
Cpgi5568 252 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T A T T T T T T T T T T T T T T A T T T T
rs214056332
MGI SNP Detail
Chr13:48819182 Barx1 within coordinates of
Cpgi5568 253 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C
rs232850170
MGI SNP Detail
Chr13:48819188 Barx1 within coordinates of
Cpgi5568 259 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251889670
MGI SNP Detail
Chr13:48819287 Barx1 within coordinates of
Cpgi5568 358 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs225639974
MGI SNP Detail
Chr13:48819372 Barx1 within coordinates of
Cpgi5568 443 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251091108
MGI SNP Detail
Chr13:48819488 Barx1 within coordinates of
Cpgi5568 559 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T T T T T T T T T T T G T T T T T
rs387882171
MGI SNP Detail
Chr13:48819573 Barx1 within coordinates of
Cpgi5568 644 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G A G G G G G G G G G G G G G G A G G
rs255687506
MGI SNP Detail
Chr13:48819682 Barx1 within coordinates of
Cpgi5568 753 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs48492736
MGI SNP Detail
Chr13:48819816 Barx1 within coordinates of
Cpgi5568 887 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP C/T C C T
rs221278296
MGI SNP Detail
Chr13:48819830 Barx1 within coordinates of
Cpgi5568 901 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs239038307
MGI SNP Detail
Chr13:48820009 Cpgi5568 1080 bp distal
Rr281361 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258425592
MGI SNP Detail
Chr13:48820129 Cpgi5568 1200 bp distal
Rr281361 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A A A A A A A A A G A A A A
rs227362731
MGI SNP Detail
Chr13:48820276 Cpgi5568 1347 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs241611393
MGI SNP Detail
Chr13:48820362 Cpgi5568 1433 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs266020639
MGI SNP Detail
Chr13:48820396 Cpgi5568 1467 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584152242
MGI SNP Detail
Chr13:48820425 Cpgi5568 1496 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587279523
MGI SNP Detail
Chr13:48820440 Cpgi5568 1511 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C G C C C G C C C C C C C C C C C G C C C C C C
rs580262311
MGI SNP Detail
Chr13:48820451 Cpgi5568 1522 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T G T T T G T T T T T T T T T T T G T T T T T T T
rs234179858
MGI SNP Detail
Chr13:48820552 Cpgi5568 1623 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253130206
MGI SNP Detail
Chr13:48820661 Cpgi5568 1732 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs583162262
MGI SNP Detail
Chr13:48820749 Cpgi5568 1820 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs211872233
MGI SNP Detail
Chr13:48820764 Cpgi5568 1835 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224125934
MGI SNP Detail
Chr13:48820795 Cpgi5568 1866 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243587829
MGI SNP Detail
Chr13:48820812 Cpgi5568 1883 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs214091774
MGI SNP Detail
Chr13:48820828 Cpgi5568 1899 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C
rs586810153
MGI SNP Detail
Chr13:48820842 Cpgi5568 1913 bp distal
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
<< first < prev1 next > last >>
Showing SNP(s) 1 - 65 of 65

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory