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Mouse SNP Summary
Symbol
Name
ID 		Cpgi5568
CpG island 5568
MGI:5670670

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs585880364
MGI SNP Detail		 Chr13:48816388 Cpgi5567 within coordinates of
Cpgi5568 1974 bp proximal
Rr281361 within coordinates of
Tssr119665 within coordinates of
 SNP A/G A A A A A A A G A G A A A A A A A A A A
rs579508317
MGI SNP Detail		 Chr13:48816515 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1847 bp proximal
Rr281361 within coordinates of
Tssr119667 within coordinates of
 SNP C/T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C
rs242160925
MGI SNP Detail		 Chr13:48816870 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1492 bp proximal
Rr281361 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs255312864
MGI SNP Detail		 Chr13:48816889 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1473 bp proximal
Rr281361 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs219984135
MGI SNP Detail		 Chr13:48816893 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1469 bp proximal
Rr281361 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs239102611
MGI SNP Detail		 Chr13:48817035 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1327 bp proximal
Rr281361 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs258322930
MGI SNP Detail		 Chr13:48817037 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1325 bp proximal
Rr281361 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C A C C C A C C C C C C C C C C C A C C A C C C C
rs228641862
MGI SNP Detail		 Chr13:48817107 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1255 bp proximal
Rr281361 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs260351485
MGI SNP Detail		 Chr13:48817134 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1228 bp proximal
Rr281361 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261579475
MGI SNP Detail		 Chr13:48817140 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1222 bp proximal
Rr281361 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs229268162
MGI SNP Detail		 Chr13:48817219 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1143 bp proximal
Rr281361 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251083111
MGI SNP Detail		 Chr13:48817301 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1061 bp proximal
Rr281361 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs214759888
MGI SNP Detail		 Chr13:48817322 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1040 bp proximal
Rr281361 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234288848
MGI SNP Detail		 Chr13:48817323 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 1039 bp proximal
Rr281361 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs247495751
MGI SNP Detail		 Chr13:48817382 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 980 bp proximal
Rr281361 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216894853
MGI SNP Detail		 Chr13:48817407 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 955 bp proximal
Rr281361 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs581756081
MGI SNP Detail		 Chr13:48817438 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 924 bp proximal
Rr281361 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs585627169
MGI SNP Detail		 Chr13:48817441 Barx1 within coordinates of
Cpgi5567 within coordinates of
Cpgi5568 921 bp proximal
Rr281361 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239284956
MGI SNP Detail		 Chr13:48817498 Barx1 within coordinates of
Cpgi5568 864 bp proximal
Rr281361 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T
rs264062907
MGI SNP Detail		 Chr13:48817514 Barx1 within coordinates of
Cpgi5568 848 bp proximal
Rr281361 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
rs211751425
MGI SNP Detail		 Chr13:48817582 Barx1 within coordinates of
Cpgi5568 780 bp proximal
Rr281361 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C
rs236833616
MGI SNP Detail		 Chr13:48817812 Barx1 within coordinates of
Cpgi5568 550 bp proximal
Rr281361 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs249716091
MGI SNP Detail		 Chr13:48817940 Barx1 within coordinates of
Cpgi5568 422 bp proximal
Rr281361 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220006559
MGI SNP Detail		 Chr13:48818075 Barx1 within coordinates of
Cpgi5568 287 bp proximal
Rr281361 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239139588
MGI SNP Detail		 Chr13:48818142 Barx1 within coordinates of
Cpgi5568 220 bp proximal
Rr281361 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251863777
MGI SNP Detail		 Chr13:48818345 Barx1 within coordinates of
Cpgi5568 17 bp proximal
Rr281361 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs226012147
MGI SNP Detail		 Chr13:48818380 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248523628
MGI SNP Detail		 Chr13:48818396 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264687294
MGI SNP Detail		 Chr13:48818435 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228930371
MGI SNP Detail		 Chr13:48818633 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs238928568
MGI SNP Detail		 Chr13:48818687 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258725424
MGI SNP Detail		 Chr13:48818823 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs227746696
MGI SNP Detail		 Chr13:48818826 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247583317
MGI SNP Detail		 Chr13:48818866 Barx1 within coordinates of
Cpgi5568 within coordinates of
Rr281361 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216929838
MGI SNP Detail		 Chr13:48818978 Barx1 within coordinates of
Cpgi5568 49 bp distal
Rr281361 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235241940
MGI SNP Detail		 Chr13:48819097 Barx1 within coordinates of
Cpgi5568 168 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254531946
MGI SNP Detail		 Chr13:48819156 Barx1 within coordinates of
Cpgi5568 227 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs211919006
MGI SNP Detail		 Chr13:48819165 Barx1 within coordinates of
Cpgi5568 236 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs235198355
MGI SNP Detail		 Chr13:48819171 Barx1 within coordinates of
Cpgi5568 242 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs249364921
MGI SNP Detail		 Chr13:48819181 Barx1 within coordinates of
Cpgi5568 252 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T A T T T T T T T T T T T T T T A T T T T
rs214056332
MGI SNP Detail		 Chr13:48819182 Barx1 within coordinates of
Cpgi5568 253 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C
rs232850170
MGI SNP Detail		 Chr13:48819188 Barx1 within coordinates of
Cpgi5568 259 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251889670
MGI SNP Detail		 Chr13:48819287 Barx1 within coordinates of
Cpgi5568 358 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs225639974
MGI SNP Detail		 Chr13:48819372 Barx1 within coordinates of
Cpgi5568 443 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251091108
MGI SNP Detail		 Chr13:48819488 Barx1 within coordinates of
Cpgi5568 559 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T T T T T T T T T T T G T T T T T
rs387882171
MGI SNP Detail		 Chr13:48819573 Barx1 within coordinates of
Cpgi5568 644 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G A G G G G G G G G G G G G G G A G G
rs255687506
MGI SNP Detail		 Chr13:48819682 Barx1 within coordinates of
Cpgi5568 753 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs48492736
MGI SNP Detail		 Chr13:48819816 Barx1 within coordinates of
Cpgi5568 887 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP C/T C C T
rs221278296
MGI SNP Detail		 Chr13:48819830 Barx1 within coordinates of
Cpgi5568 901 bp distal
Cpgi5569 within coordinates of
Rr281361 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs239038307
MGI SNP Detail		 Chr13:48820009 Cpgi5568 1080 bp distal
Rr281361 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258425592
MGI SNP Detail		 Chr13:48820129 Cpgi5568 1200 bp distal
Rr281361 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A A A A A A A A A G A A A A
rs227362731
MGI SNP Detail		 Chr13:48820276 Cpgi5568 1347 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs241611393
MGI SNP Detail		 Chr13:48820362 Cpgi5568 1433 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs266020639
MGI SNP Detail		 Chr13:48820396 Cpgi5568 1467 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584152242
MGI SNP Detail		 Chr13:48820425 Cpgi5568 1496 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587279523
MGI SNP Detail		 Chr13:48820440 Cpgi5568 1511 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C G C C C G C C C C C C C C C C C G C C C C C C
rs580262311
MGI SNP Detail		 Chr13:48820451 Cpgi5568 1522 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T G T T T G T T T T T T T T T T T G T T T T T T T
rs234179858
MGI SNP Detail		 Chr13:48820552 Cpgi5568 1623 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253130206
MGI SNP Detail		 Chr13:48820661 Cpgi5568 1732 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs583162262
MGI SNP Detail		 Chr13:48820749 Cpgi5568 1820 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs211872233
MGI SNP Detail		 Chr13:48820764 Cpgi5568 1835 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224125934
MGI SNP Detail		 Chr13:48820795 Cpgi5568 1866 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243587829
MGI SNP Detail		 Chr13:48820812 Cpgi5568 1883 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs214091774
MGI SNP Detail		 Chr13:48820828 Cpgi5568 1899 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C
rs586810153
MGI SNP Detail		 Chr13:48820842 Cpgi5568 1913 bp distal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
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Showing SNP(s) 1 - 65 of 65
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory