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Mouse SNP Summary
Symbol
Name
ID 		Cpgi5621
CpG island 5621
MGI:5670723

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Showing SNP(s) 1 - 74 of 74

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242783413
MGI SNP Detail		 Chr13:53613944 Cpgi5621 1995 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs262255030
MGI SNP Detail		 Chr13:53613977 Cpgi5621 1962 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T
rs223875081
MGI SNP Detail		 Chr13:53614026 Cpgi5621 1913 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs46874800
MGI SNP Detail		 Chr13:53614045 Cpgi5621 1894 bp proximal
 SNP G/T G G G T G T
rs260581424
MGI SNP Detail		 Chr13:53614069 Cpgi5621 1870 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs229118661
MGI SNP Detail		 Chr13:53614250 Cpgi5621 1689 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs47964361
MGI SNP Detail		 Chr13:53614392 Cpgi5621 1547 bp proximal
 SNP C/T T T T C T C C T C
rs47434532
MGI SNP Detail		 Chr13:53614415 Cpgi5621 1524 bp proximal
 SNP A/C C C C C C A C C A C C
rs229435915
MGI SNP Detail		 Chr13:53614566 Cpgi5621 1373 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs250816062
MGI SNP Detail		 Chr13:53614577 Cpgi5621 1362 bp proximal
 SNP A/T T T T T T A T T T T T A A A A A A A A T T A T T T T A T T T T A T T T T T T A T T T T T T T T T T
rs50246423
MGI SNP Detail		 Chr13:53614587 Cpgi5621 1352 bp proximal
 SNP A/T T T A
rs48415996
MGI SNP Detail		 Chr13:53614621 Cpgi5621 1318 bp proximal
 SNP C/T T T C T C T
rs46071362
MGI SNP Detail		 Chr13:53614624 Cpgi5621 1315 bp proximal
 SNP C/T T T T C C T T T
rs51022781
MGI SNP Detail		 Chr13:53614651 Cpgi5621 1288 bp proximal
 SNP A/G G G G A A A
rs212065183
MGI SNP Detail		 Chr13:53614670 Cpgi5621 1269 bp proximal
 SNP A/G A G
rs216968857
MGI SNP Detail		 Chr13:53614689 Cpgi5621 1250 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33883400
MGI SNP Detail		 Chr13:53614719 Cpgi5621 1220 bp proximal
 SNP A/G G A G G G
rs29229229
MGI SNP Detail		 Chr13:53614784 Cpgi5621 1155 bp proximal
 SNP C/T C T C C C
rs212629115
MGI SNP Detail		 Chr13:53614807 Cpgi5621 1132 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29927727
MGI SNP Detail		 Chr13:53615012 Cpgi5621 927 bp proximal
Rr388456 within coordinates of
 SNP A/G G A G G G A
rs580976836
MGI SNP Detail		 Chr13:53615109 Cpgi5621 830 bp proximal
Rr388456 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs29226041
MGI SNP Detail		 Chr13:53615147 Cpgi5621 792 bp proximal
Rr388456 within coordinates of
 SNP A/T A A A T T A A T T A T A
rs223782908
MGI SNP Detail		 Chr13:53615224 Cpgi5621 715 bp proximal
Rr388456 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29898577
MGI SNP Detail		 Chr13:53615230 Cpgi5621 709 bp proximal
Rr388456 within coordinates of
 SNP G/T T G G T G G
rs584748689
MGI SNP Detail		 Chr13:53615279 Cpgi5621 660 bp proximal
Rr388456 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254430823
MGI SNP Detail		 Chr13:53615520 Cpgi5621 419 bp proximal
Rr388456 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs223437124
MGI SNP Detail		 Chr13:53615694 Cpgi5621 245 bp proximal
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29234046
MGI SNP Detail		 Chr13:53615724 Cpgi5621 215 bp proximal
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP A/C/G/T T T ?
rs222310584
MGI SNP Detail		 Chr13:53615748 Cpgi5621 191 bp proximal
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP G/T G T
rs236380063
MGI SNP Detail		 Chr13:53615749 Cpgi5621 190 bp proximal
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP C C C
rs259464708
MGI SNP Detail		 Chr13:53615758 Cpgi5621 181 bp proximal
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229543320
MGI SNP Detail		 Chr13:53615762 Cpgi5621 177 bp proximal
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs30059274
MGI SNP Detail		 Chr13:53615881 Cpgi5621 58 bp proximal
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP A/T T T A A A T T T T T T T A T
rs213611804
MGI SNP Detail		 Chr13:53615908 Cpgi5621 31 bp proximal
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29516880
MGI SNP Detail		 Chr13:53615985 Cpgi5621 within coordinates of
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP A/C C C A A C C C C C C A
rs29629129
MGI SNP Detail		 Chr13:53616008 Cpgi5621 within coordinates of
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP A/G A A A G A A
rs50719256
MGI SNP Detail		 Chr13:53616010 Cpgi5621 within coordinates of
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP C/T C C T T C
rs29914678
MGI SNP Detail		 Chr13:53616014 Cpgi5621 within coordinates of
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP G/T G G T T G T
rs29822160
MGI SNP Detail		 Chr13:53616037 Cpgi5621 within coordinates of
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP C/T C C T T C C C C C C C T C
rs223468654
MGI SNP Detail		 Chr13:53616103 Cpgi5621 within coordinates of
Rr388456 within coordinates of
Rr480050 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs229885311
MGI SNP Detail		 Chr13:53616184 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr388456 within coordinates of
Rr480052 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256220646
MGI SNP Detail		 Chr13:53616253 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr388456 within coordinates of
Rr480052 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29965800
MGI SNP Detail		 Chr13:53616257 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr388456 within coordinates of
Rr480052 within coordinates of
 SNP C/T C C T C C
rs243916603
MGI SNP Detail		 Chr13:53616347 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr388456 within coordinates of
Rr480052 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29781298
MGI SNP Detail		 Chr13:53616361 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr388456 within coordinates of
Rr480052 within coordinates of
 SNP C/G C G C G
rs29915761
MGI SNP Detail		 Chr13:53616364 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr388456 within coordinates of
Rr480052 within coordinates of
 SNP A/G A G A G
rs240134633
MGI SNP Detail		 Chr13:53616381 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr388456 within coordinates of
Rr480052 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs259108231
MGI SNP Detail		 Chr13:53616508 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr388456 within coordinates of
Rr480052 within coordinates of
 SNP A/T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T A T T T T T T T T T
rs50727875
MGI SNP Detail		 Chr13:53616535 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr388456 within coordinates of
Rr480052 within coordinates of
 SNP C/T T T T C T T T T
rs236261203
MGI SNP Detail		 Chr13:53616697 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr388456 within coordinates of
Rr480052 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262120092
MGI SNP Detail		 Chr13:53616709 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr388456 within coordinates of
Rr480052 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs230595820
MGI SNP Detail		 Chr13:53616749 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr388456 within coordinates of
Rr480052 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs244420917
MGI SNP Detail		 Chr13:53616805 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr480052 within coordinates of
 SNP A/G A G
rs215940934
MGI SNP Detail		 Chr13:53616807 Cpgi5621 within coordinates of
Gm33763 within coordinates of
Rr480052 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs46629279
MGI SNP Detail		 Chr13:53616914 Cpgi5621 89 bp distal
Gm33763 within coordinates of
Rr480052 within coordinates of
 SNP A/T T T T T A
rs227892218
MGI SNP Detail		 Chr13:53616935 Cpgi5621 110 bp distal
Gm33763 within coordinates of
Rr480052 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs247761565
MGI SNP Detail		 Chr13:53617001 Cpgi5621 176 bp distal
Gm33763 within coordinates of
Rr480052 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs217115809
MGI SNP Detail		 Chr13:53617142 Cpgi5621 317 bp distal
Gm33763 within coordinates of
Rr480052 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs52159415
MGI SNP Detail		 Chr13:53617307 Cpgi5621 482 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
Rr480052 within coordinates of
 SNP A/G A G G A
rs261530171
MGI SNP Detail		 Chr13:53617334 Cpgi5621 509 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
Rr480052 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs581608652
MGI SNP Detail		 Chr13:53617420 Cpgi5621 595 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
Rr480052 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213727480
MGI SNP Detail		 Chr13:53617423 Cpgi5621 598 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
Rr480052 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs238943250
MGI SNP Detail		 Chr13:53617465 Cpgi5621 640 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
Rr480052 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs50338772
MGI SNP Detail		 Chr13:53617482 Cpgi5621 657 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
Rr480052 within coordinates of
 SNP A/G G G A G G A A G A
rs259221502
MGI SNP Detail		 Chr13:53617572 Cpgi5621 747 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
Rr480052 within coordinates of
 SNP A/C C A
rs50085560
MGI SNP Detail		 Chr13:53617702 Cpgi5621 877 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
Rr480052 within coordinates of
 SNP C/T C C C C T
rs29551411
MGI SNP Detail		 Chr13:53618201 Cpgi5621 1376 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
 SNP C/G C C C G G C C G C
rs29859094
MGI SNP Detail		 Chr13:53618211 Cpgi5621 1386 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
 SNP A/C C C A C C C
rs241278402
MGI SNP Detail		 Chr13:53618224 Cpgi5621 1399 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264969035
MGI SNP Detail		 Chr13:53618243 Cpgi5621 1418 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585333161
MGI SNP Detail		 Chr13:53618293 Cpgi5621 1468 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230458004
MGI SNP Detail		 Chr13:53618320 Cpgi5621 1495 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29774968
MGI SNP Detail		 Chr13:53618338 Cpgi5621 1513 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
 SNP G/T G T T G
rs29682555
MGI SNP Detail		 Chr13:53618786 Cpgi5621 1961 bp distal
Gm33763 within coordinates of
Rr406701 within coordinates of
Rr480053 within coordinates of
 SNP A/T T T A T T T
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Showing SNP(s) 1 - 74 of 74
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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