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Mouse SNP Summary
Symbol
Name
ID 		Cpgi6396
CpG island 6396
MGI:5671497

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Showing SNP(s) 1 - 40 of 40

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs8244142
MGI SNP Detail		 Chr14:48900649 Cpgi6396 1707 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T C C C C C C T C T C C T C T C C C C C C C
rs250941930
MGI SNP Detail		 Chr14:48900754 Cpgi6396 1602 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218563193
MGI SNP Detail		 Chr14:48900897 Cpgi6396 1459 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244537634
MGI SNP Detail		 Chr14:48901217 Cpgi6396 1139 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs264602382
MGI SNP Detail		 Chr14:48901260 Cpgi6396 1096 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51638239
MGI SNP Detail		 Chr14:48901278 Cpgi6396 1078 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T T T T T T C T T T T C T C T T T T
rs246741183
MGI SNP Detail		 Chr14:48901297 Cpgi6396 1059 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265567488
MGI SNP Detail		 Chr14:48901331 Cpgi6396 1025 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs8244138
MGI SNP Detail		 Chr14:48901369 Cpgi6396 987 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T T T T T T T C T T C C
rs8244137
MGI SNP Detail		 Chr14:48901381 Cpgi6396 975 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/G G G G G A G G
rs52152078
MGI SNP Detail		 Chr14:48901457 Cpgi6396 899 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP G/T G T
rs578620815
MGI SNP Detail		 Chr14:48901502 Cpgi6396 854 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213000930
MGI SNP Detail		 Chr14:48901777 Cpgi6396 579 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223562764
MGI SNP Detail		 Chr14:48901831 Cpgi6396 525 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252638974
MGI SNP Detail		 Chr14:48901892 Cpgi6396 464 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219168366
MGI SNP Detail		 Chr14:48902127 Cpgi6396 229 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs582166658
MGI SNP Detail		 Chr14:48902172 Cpgi6396 184 bp proximal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs242006074
MGI SNP Detail		 Chr14:48902410 Cpgi6396 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259358067
MGI SNP Detail		 Chr14:48902424 Cpgi6396 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215036258
MGI SNP Detail		 Chr14:48902476 Cpgi6396 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264328197
MGI SNP Detail		 Chr14:48902497 Cpgi6396 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/C C A
rs251000467
MGI SNP Detail		 Chr14:48902512 Cpgi6396 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs218613623
MGI SNP Detail		 Chr14:48902554 Cpgi6396 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs30541876
MGI SNP Detail		 Chr14:48902635 Cpgi6396 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/G G A G G A
rs585371294
MGI SNP Detail		 Chr14:48902651 Cpgi6396 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264009886
MGI SNP Detail		 Chr14:48903229 Cpgi6396 227 bp distal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/C A A A A A A A A A A A A C C A
rs226205168
MGI SNP Detail		 Chr14:48903263 Cpgi6396 261 bp distal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs249579169
MGI SNP Detail		 Chr14:48903374 Cpgi6396 372 bp distal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs234215269
MGI SNP Detail		 Chr14:48903525 Cpgi6396 523 bp distal
Cpgi6397 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP G/T T G
rs220261769
MGI SNP Detail		 Chr14:48903678 Cpgi6396 676 bp distal
Cpgi6397 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237799290
MGI SNP Detail		 Chr14:48903731 Cpgi6396 729 bp distal
Cpgi6397 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs254775384
MGI SNP Detail		 Chr14:48903746 Cpgi6396 744 bp distal
Cpgi6397 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs31237610
MGI SNP Detail		 Chr14:48903951 Cpgi6396 949 bp distal
Cpgi6397 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/G A G A A G
rs254787833
MGI SNP Detail		 Chr14:48903987 Cpgi6396 985 bp distal
Cpgi6397 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265936217
MGI SNP Detail		 Chr14:48904095 Cpgi6396 1093 bp distal
Cpgi6397 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31464452
MGI SNP Detail		 Chr14:48904260 Cpgi6396 1258 bp distal
Cpgi6397 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T T T T T T C T C C T C C T C C C T C
rs258196050
MGI SNP Detail		 Chr14:48904411 Cpgi6396 1409 bp distal
Cpgi6397 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215097004
MGI SNP Detail		 Chr14:48904484 Cpgi6396 1482 bp distal
Cpgi6397 within coordinates of
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs232633865
MGI SNP Detail		 Chr14:48904590 Cpgi6396 1588 bp distal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs244831294
MGI SNP Detail		 Chr14:48904629 Cpgi6396 1627 bp distal
Otx2 within coordinates of
Rr297109 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
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Showing SNP(s) 1 - 40 of 40
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory