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Mouse SNP Summary
Symbol
Name
ID 		Cpgi9589
CpG island 9589
MGI:5674678

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Showing SNP(s) 1 - 57 of 57

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs107932813
MGI SNP Detail		 Chr17:85920115 Cpgi9587 within coordinates of
Cpgi9589 1992 bp proximal
Six3os1 within coordinates of
 SNP A/G G A
rs239006437
MGI SNP Detail		 Chr17:85920184 Cpgi9587 within coordinates of
Cpgi9589 1923 bp proximal
Six3os1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256006098
MGI SNP Detail		 Chr17:85920215 Cpgi9587 within coordinates of
Cpgi9589 1892 bp proximal
Six3os1 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs33450583
MGI SNP Detail		 Chr17:85920229 Cpgi9587 within coordinates of
Cpgi9589 1878 bp proximal
Six3os1 within coordinates of
 SNP A/G A A A G G A G A G A A A A A G A A
rs242104627
MGI SNP Detail		 Chr17:85920268 Cpgi9587 within coordinates of
Cpgi9589 1839 bp proximal
Six3os1 within coordinates of
 SNP C/T T C
rs212806272
MGI SNP Detail		 Chr17:85920274 Cpgi9587 within coordinates of
Cpgi9589 1833 bp proximal
Six3os1 within coordinates of
 SNP A/G A G
rs234950285
MGI SNP Detail		 Chr17:85920356 Cpgi9587 within coordinates of
Cpgi9589 1751 bp proximal
Six3os1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248925810
MGI SNP Detail		 Chr17:85920462 Cpgi9587 within coordinates of
Cpgi9589 1645 bp proximal
Six3os1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs108509100
MGI SNP Detail		 Chr17:85920797 Cpgi9589 1310 bp proximal
Six3os1 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs234814731
MGI SNP Detail		 Chr17:85920897 Cpgi9589 1210 bp proximal
Gm55782 within coordinates of
Six3os1 within coordinates of
Tssr146085 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs108562722
MGI SNP Detail		 Chr17:85921200 Cpgi9588 within coordinates of
Cpgi9589 907 bp proximal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/G G C
rs244566019
MGI SNP Detail		 Chr17:85921309 Cpgi9588 within coordinates of
Cpgi9589 798 bp proximal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP G/T T G
rs108016486
MGI SNP Detail		 Chr17:85921350 Cpgi9588 within coordinates of
Cpgi9589 757 bp proximal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs215331019
MGI SNP Detail		 Chr17:85921486 Cpgi9588 within coordinates of
Cpgi9589 621 bp proximal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236495647
MGI SNP Detail		 Chr17:85921567 Cpgi9589 540 bp proximal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs52031980
MGI SNP Detail		 Chr17:85921645 Cpgi9589 462 bp proximal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/G G G G G G G C G G G G G G G G
rs220979075
MGI SNP Detail		 Chr17:85921715 Cpgi9589 392 bp proximal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs108441254
MGI SNP Detail		 Chr17:85922043 Cpgi9589 64 bp proximal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/T A T
rs108245718
MGI SNP Detail		 Chr17:85922174 Cpgi9589 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs221190894
MGI SNP Detail		 Chr17:85922218 Cpgi9589 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs238834840
MGI SNP Detail		 Chr17:85922329 Cpgi9589 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs33394257
MGI SNP Detail		 Chr17:85922366 Cpgi9589 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/G G G G G A A G A G A G G G G A G G
rs108104299
MGI SNP Detail		 Chr17:85922595 Cpgi9589 within coordinates of
Gm55784 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
Tssr149711 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs242093319
MGI SNP Detail		 Chr17:85922683 Cpgi9589 within coordinates of
Gm55784 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs264603906
MGI SNP Detail		 Chr17:85922770 Cpgi9589 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233702833
MGI SNP Detail		 Chr17:85922773 Cpgi9589 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs247994413
MGI SNP Detail		 Chr17:85922942 Cpgi9589 55 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs215854666
MGI SNP Detail		 Chr17:85922963 Cpgi9589 76 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs228148796
MGI SNP Detail		 Chr17:85923100 Cpgi9589 213 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs108518090
MGI SNP Detail		 Chr17:85923124 Cpgi9589 237 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs260297471
MGI SNP Detail		 Chr17:85923145 Cpgi9589 258 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/G G C
rs108896169
MGI SNP Detail		 Chr17:85923149 Cpgi9589 262 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs256407483
MGI SNP Detail		 Chr17:85923202 Cpgi9589 315 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs219304540
MGI SNP Detail		 Chr17:85923250 Cpgi9589 363 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T T C
rs49916779
MGI SNP Detail		 Chr17:85923290 Cpgi9589 403 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/G G G G G G G G G G G A A G G A G G
rs252899692
MGI SNP Detail		 Chr17:85923348 Cpgi9589 461 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs49128928
MGI SNP Detail		 Chr17:85923369 Cpgi9589 482 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T T T T T C T T T C C T T T T
rs108333985
MGI SNP Detail		 Chr17:85923414 Cpgi9589 527 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs262262925
MGI SNP Detail		 Chr17:85923429 Cpgi9589 542 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs107982071
MGI SNP Detail		 Chr17:85923454 Cpgi9589 567 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs244761553
MGI SNP Detail		 Chr17:85923457 Cpgi9589 570 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs108151404
MGI SNP Detail		 Chr17:85923463 Cpgi9589 576 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/G G C
rs108255606
MGI SNP Detail		 Chr17:85923474 Cpgi9589 587 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP G/T G T
rs241856454
MGI SNP Detail		 Chr17:85923578 Cpgi9589 691 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246611011
MGI SNP Detail		 Chr17:85923615 Cpgi9589 728 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265306800
MGI SNP Detail		 Chr17:85923797 Cpgi9589 910 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229990696
MGI SNP Detail		 Chr17:85924001 Cpgi9589 1114 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49650797
MGI SNP Detail		 Chr17:85924003 Cpgi9589 1116 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/T T T T T T T T T T T A A T T A T T
rs212171509
MGI SNP Detail		 Chr17:85924037 Cpgi9589 1150 bp distal
Cpgi9590 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235452396
MGI SNP Detail		 Chr17:85924131 Cpgi9589 1244 bp distal
Cpgi9590 within coordinates of
Gm55785 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246933428
MGI SNP Detail		 Chr17:85924400 Cpgi9589 1513 bp distal
Gm55785 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs216312385
MGI SNP Detail		 Chr17:85924414 Cpgi9589 1527 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs233187931
MGI SNP Detail		 Chr17:85924536 Cpgi9589 1649 bp distal
Cpgi9591 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs108722971
MGI SNP Detail		 Chr17:85924545 Cpgi9589 1658 bp distal
Cpgi9591 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/G A G
rs221717071
MGI SNP Detail		 Chr17:85924597 Cpgi9589 1710 bp distal
Cpgi9591 within coordinates of
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs47291022
MGI SNP Detail		 Chr17:85924671 Cpgi9589 1784 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/G G G G G G G G G G G A A G G A G G
rs260725616
MGI SNP Detail		 Chr17:85924747 Cpgi9589 1860 bp distal
Six3 within coordinates of
Six3os1 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
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Showing SNP(s) 1 - 57 of 57
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory