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Mouse SNP Summary
Symbol
Name
ID
Cpgi11263
CpG island 11263
MGI:5676349

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Showing SNP(s) 1 - 66 of 66

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SNP Density Heatmap
Chr2 from 21,370,147 bp to 21,374,916 bp
(4,770 bp)
Show only selected strains with alleles     Show all selected strains    
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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs581768516
MGI SNP Detail
Chr2:21370181 Cpgi11263 1966 bp proximal
Gm13327 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254159440
MGI SNP Detail
Chr2:21370231 Cpgi11263 1916 bp proximal
Gm13327 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs387659355
MGI SNP Detail
Chr2:21370237 Cpgi11263 1910 bp proximal
Gm13327 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G T G G G T G G G G G G
rs217595635
MGI SNP Detail
Chr2:21370263 Cpgi11263 1884 bp proximal
Gm13327 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224351746
MGI SNP Detail
Chr2:21370297 Cpgi11263 1850 bp proximal
Gm13327 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs244436044
MGI SNP Detail
Chr2:21370333 Cpgi11263 1814 bp proximal
Gm13327 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs213773187
MGI SNP Detail
Chr2:21370376 Cpgi11263 1771 bp proximal
Gm13327 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237052135
MGI SNP Detail
Chr2:21370479 Cpgi11263 1668 bp proximal
Gm13327 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs256295887
MGI SNP Detail
Chr2:21370529 Cpgi11263 1618 bp proximal
Gm13327 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs215663088
MGI SNP Detail
Chr2:21370588 Cpgi11263 1559 bp proximal
Gm13327 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240894136
MGI SNP Detail
Chr2:21370593 Cpgi11263 1554 bp proximal
Gm13327 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs252498999
MGI SNP Detail
Chr2:21370613 Cpgi11263 1534 bp proximal
Gm13327 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222472129
MGI SNP Detail
Chr2:21370622 Cpgi11263 1525 bp proximal
Gm13327 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs229791481
MGI SNP Detail
Chr2:21370645 Cpgi11263 1502 bp proximal
Gm13327 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs579108454
MGI SNP Detail
Chr2:21370723 Cpgi11263 1424 bp proximal
Gm13327 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582170098
MGI SNP Detail
Chr2:21370725 Cpgi11263 1422 bp proximal
Gm13327 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585444640
MGI SNP Detail
Chr2:21370743 Cpgi11263 1404 bp proximal
Gm13327 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs578272093
MGI SNP Detail
Chr2:21370752 Cpgi11263 1395 bp proximal
Gm13327 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs582059602
MGI SNP Detail
Chr2:21370771 Cpgi11263 1376 bp proximal
Gm13327 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248690092
MGI SNP Detail
Chr2:21370773 Cpgi11263 1374 bp proximal
Gm13327 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs586275426
MGI SNP Detail
Chr2:21370774 Cpgi11263 1373 bp proximal
Gm13327 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs221739022
MGI SNP Detail
Chr2:21370782 Cpgi11263 1365 bp proximal
Gm13327 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs27166981
MGI SNP Detail
Chr2:21370960 Cpgi11263 1187 bp proximal
Gm13327 within coordinates of
SNP A/G G G G G G G G G G G G G G A G
rs265609535
MGI SNP Detail
Chr2:21370983 Cpgi11263 1164 bp proximal
Gm13327 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs225293137
MGI SNP Detail
Chr2:21371009 Cpgi11263 1138 bp proximal
Gm13327 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250516504
MGI SNP Detail
Chr2:21371034 Cpgi11263 1113 bp proximal
Gm13327 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261518415
MGI SNP Detail
Chr2:21371064 Cpgi11263 1083 bp proximal
Gm13327 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs29818961
MGI SNP Detail
Chr2:21371107 Cpgi11263 1040 bp proximal
Gm13327 within coordinates of
SNP A/G A G A
rs257700383
MGI SNP Detail
Chr2:21371288 Cpgi11263 859 bp proximal
Gm13327 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580474824
MGI SNP Detail
Chr2:21371295 Cpgi11263 852 bp proximal
Gm13327 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs231282474
MGI SNP Detail
Chr2:21371572 Cpgi11263 575 bp proximal
Gm13327 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252313759
MGI SNP Detail
Chr2:21371578 Cpgi11263 569 bp proximal
Gm13327 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216148376
MGI SNP Detail
Chr2:21371662 Cpgi11263 485 bp proximal
Gm13327 within coordinates of
Rr56373 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs238616997
MGI SNP Detail
Chr2:21371691 Cpgi11263 456 bp proximal
Gm13327 within coordinates of
Rr56373 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246670093
MGI SNP Detail
Chr2:21371692 Cpgi11263 455 bp proximal
Gm13327 within coordinates of
Rr56373 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217266579
MGI SNP Detail
Chr2:21371698 Cpgi11263 449 bp proximal
Gm13327 within coordinates of
Rr56373 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229840833
MGI SNP Detail
Chr2:21371724 Cpgi11263 423 bp proximal
Gm13327 within coordinates of
Rr56373 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs27166980
MGI SNP Detail
Chr2:21371732 Cpgi11263 415 bp proximal
Gm13327 within coordinates of
Rr56373 within coordinates of
SNP A/G A G G A A A A G G G A A G A A G A
rs222306358
MGI SNP Detail
Chr2:21371752 Cpgi11263 395 bp proximal
Gm13327 within coordinates of
Rr56373 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs238702165
MGI SNP Detail
Chr2:21371903 Cpgi11263 244 bp proximal
Gm13327 within coordinates of
Rr56373 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258286942
MGI SNP Detail
Chr2:21371996 Cpgi11263 151 bp proximal
Gm13327 within coordinates of
Rr56373 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs107692156
MGI SNP Detail
Chr2:21372148 Cpgi11263 within coordinates of
Gm13327 within coordinates of
Rr56373 within coordinates of
SNP A/C C C A
rs242409977
MGI SNP Detail
Chr2:21372172 Cpgi11263 within coordinates of
Gm13327 within coordinates of
Rr56373 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261546958
MGI SNP Detail
Chr2:21372582 Cpgi11263 within coordinates of
Gm13327 within coordinates of
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs218429621
MGI SNP Detail
Chr2:21372656 Cpgi11263 within coordinates of
Gm13327 within coordinates of
Gpr158 within coordinates of
Rr56373 within coordinates of
Tssr16472 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238306105
MGI SNP Detail
Chr2:21372699 Cpgi11263 within coordinates of
Gm13327 within coordinates of
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T T T T T T T T G T T T T T T T T T T T T
rs27166979
MGI SNP Detail
Chr2:21372717 Cpgi11263 within coordinates of
Gm13327 within coordinates of
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP C/T C C C C C C C C C C C C C C T
rs257732672
MGI SNP Detail
Chr2:21373045 Cpgi11263 129 bp distal
Gm13327 within coordinates of
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs27166978
MGI SNP Detail
Chr2:21373108 Cpgi11263 192 bp distal
Gm13327 within coordinates of
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP C/T C C C C C C C C C C C C C C T
rs257350672
MGI SNP Detail
Chr2:21373612 Cpgi11263 696 bp distal
Cpgi11264 within coordinates of
Gm13327 within coordinates of
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263627631
MGI SNP Detail
Chr2:21373627 Cpgi11263 711 bp distal
Cpgi11264 within coordinates of
Gm13327 within coordinates of
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234155900
MGI SNP Detail
Chr2:21373853 Cpgi11263 937 bp distal
Cpgi11264 within coordinates of
Gm13327 within coordinates of
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs246699783
MGI SNP Detail
Chr2:21373885 Cpgi11263 969 bp distal
Cpgi11264 within coordinates of
Gm13327 within coordinates of
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217289618
MGI SNP Detail
Chr2:21373936 Cpgi11263 1020 bp distal
Cpgi11264 within coordinates of
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29674906
MGI SNP Detail
Chr2:21374141 Cpgi11263 1225 bp distal
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP C/T C T C T
rs242913734
MGI SNP Detail
Chr2:21374183 Cpgi11263 1267 bp distal
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs213949502
MGI SNP Detail
Chr2:21374206 Cpgi11263 1290 bp distal
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP A/G G G G A A G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G A G G G G G G G G G G G G G
rs236811421
MGI SNP Detail
Chr2:21374216 Cpgi11263 1300 bp distal
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262773663
MGI SNP Detail
Chr2:21374288 Cpgi11263 1372 bp distal
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584120385
MGI SNP Detail
Chr2:21374390 Cpgi11263 1474 bp distal
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs586021091
MGI SNP Detail
Chr2:21374396 Cpgi11263 1480 bp distal
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs580203865
MGI SNP Detail
Chr2:21374402 Cpgi11263 1486 bp distal
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs583247500
MGI SNP Detail
Chr2:21374410 Cpgi11263 1494 bp distal
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs235250749
MGI SNP Detail
Chr2:21374816 Cpgi11263 1900 bp distal
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255638642
MGI SNP Detail
Chr2:21374849 Cpgi11263 1933 bp distal
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs218462496
MGI SNP Detail
Chr2:21374915 Cpgi11263 1999 bp distal
Gpr158 within coordinates of
Rr56373 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 66 of 66

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory