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Mouse SNP Summary
Symbol
Name
ID 		Cpgi11300
CpG island 11300
MGI:5676386

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Showing SNP(s) 1 - 63 of 63

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262631016
MGI SNP Detail		 Chr2:25111967 Cimip2a within coordinates of
Cpgi11300 1813 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs224355847
MGI SNP Detail		 Chr2:25112048 Cimip2a within coordinates of
Cpgi11300 1732 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241447006
MGI SNP Detail		 Chr2:25112165 Cimip2a within coordinates of
Cpgi11300 1615 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs28257681
MGI SNP Detail		 Chr2:25112482 Cpgi11300 1298 bp proximal
Tubb4b within coordinates of
 SNP C/T C C C C C C T C C C C C
rs583208617
MGI SNP Detail		 Chr2:25112566 Cpgi11300 1214 bp proximal
Tubb4b within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs586543641
MGI SNP Detail		 Chr2:25112677 Cpgi11300 1103 bp proximal
Tubb4b within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261023077
MGI SNP Detail		 Chr2:25112827 Cpgi11300 953 bp proximal
Tubb4b within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G G G G G G T G G G G G G T G G G G
rs246120690
MGI SNP Detail		 Chr2:25112841 Cpgi11300 939 bp proximal
Tubb4b within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A
rs587379486
MGI SNP Detail		 Chr2:25112884 Cpgi11300 896 bp proximal
Tubb4b within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs13461689
MGI SNP Detail		 Chr2:25113037 Cpgi11300 743 bp proximal
Tubb4b within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs585258457
MGI SNP Detail		 Chr2:25113196 Cpgi11300 584 bp proximal
Tubb4b within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs254454369
MGI SNP Detail		 Chr2:25113484 Cpgi11300 296 bp proximal
Tubb4b within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs223542626
MGI SNP Detail		 Chr2:25113512 Cpgi11300 268 bp proximal
Tubb4b within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs578288846
MGI SNP Detail		 Chr2:25113575 Cpgi11300 205 bp proximal
Tubb4b within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs237127402
MGI SNP Detail		 Chr2:25113645 Cpgi11300 135 bp proximal
Tubb4b within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G G C G G G G
rs261936069
MGI SNP Detail		 Chr2:25113695 Cpgi11300 85 bp proximal
Tubb4b within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs230220167
MGI SNP Detail		 Chr2:25113738 Cpgi11300 42 bp proximal
Tubb4b within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs243962793
MGI SNP Detail		 Chr2:25114086 Cpgi11300 within coordinates of
Tubb4b within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265477549
MGI SNP Detail		 Chr2:25114095 Cpgi11300 within coordinates of
Tubb4b within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs227342029
MGI SNP Detail		 Chr2:25114103 Cpgi11300 within coordinates of
Tubb4b within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246512573
MGI SNP Detail		 Chr2:25114111 Cpgi11300 within coordinates of
Tubb4b within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217069373
MGI SNP Detail		 Chr2:25114360 Cpgi11300 within coordinates of
Tubb4b within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs223189677
MGI SNP Detail		 Chr2:25114475 Cpgi11300 within coordinates of
Tubb4b within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs242631806
MGI SNP Detail		 Chr2:25114615 Cpgi11300 within coordinates of
Tubb4b within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs213217806
MGI SNP Detail		 Chr2:25114727 Cpgi11300 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G T G G G G G G T G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238607849
MGI SNP Detail		 Chr2:25114759 Cpgi11300 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258116393
MGI SNP Detail		 Chr2:25114859 Cpgi11300 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216533899
MGI SNP Detail		 Chr2:25114878 Cpgi11300 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234930729
MGI SNP Detail		 Chr2:25114939 Cpgi11300 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254607378
MGI SNP Detail		 Chr2:25115178 Cpgi11300 within coordinates of
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223495582
MGI SNP Detail		 Chr2:25115196 Cpgi11300 within coordinates of
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237258783
MGI SNP Detail		 Chr2:25115243 Cpgi11300 within coordinates of
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs246883551
MGI SNP Detail		 Chr2:25115403 Cpgi11300 117 bp distal
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A T A T A A A A T A A A A T A A A A A A T A A A A A A T A A A
rs263096719
MGI SNP Detail		 Chr2:25115441 Cpgi11300 155 bp distal
Gm75683 within coordinates of
Gm75691 within coordinates of
Tssr16668 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs227469406
MGI SNP Detail		 Chr2:25115610 Cpgi11300 324 bp distal
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs240564593
MGI SNP Detail		 Chr2:25115626 Cpgi11300 340 bp distal
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs259643490
MGI SNP Detail		 Chr2:25115637 Cpgi11300 351 bp distal
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223326913
MGI SNP Detail		 Chr2:25115670 Cpgi11300 384 bp distal
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs249546430
MGI SNP Detail		 Chr2:25115705 Cpgi11300 419 bp distal
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs213855630
MGI SNP Detail		 Chr2:25115737 Cpgi11300 451 bp distal
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs230429888
MGI SNP Detail		 Chr2:25115764 Cpgi11300 478 bp distal
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs256747232
MGI SNP Detail		 Chr2:25115765 Cpgi11300 479 bp distal
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215993572
MGI SNP Detail		 Chr2:25115766 Cpgi11300 480 bp distal
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs235084585
MGI SNP Detail		 Chr2:25115794 Cpgi11300 508 bp distal
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs580623527
MGI SNP Detail		 Chr2:25115893 Cpgi11300 607 bp distal
Gm75683 within coordinates of
Gm75691 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs28257680
MGI SNP Detail		 Chr2:25116027 Cpgi11300 741 bp distal
Gm75683 within coordinates of
 SNP A/G A A A A A A G A A A A A A A A
rs217583049
MGI SNP Detail		 Chr2:25116077 Cpgi11300 791 bp distal
Gm75683 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230060241
MGI SNP Detail		 Chr2:25116224 Cpgi11300 938 bp distal
Gm75683 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs584375155
MGI SNP Detail		 Chr2:25116333 Cpgi11300 1047 bp distal
Gm75683 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs578627884
MGI SNP Detail		 Chr2:25116341 Cpgi11300 1055 bp distal
Gm75683 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs582377510
MGI SNP Detail		 Chr2:25116347 Cpgi11300 1061 bp distal
Gm75683 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs586009691
MGI SNP Detail		 Chr2:25116357 Cpgi11300 1071 bp distal
Gm75683 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs28257679
MGI SNP Detail		 Chr2:25116386 Cpgi11300 1100 bp distal
Gm75683 within coordinates of
 SNP A/T A A A A A T A A A A A A A A
rs222217799
MGI SNP Detail		 Chr2:25116611 Cpgi11300 1325 bp distal
Gm75683 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs28257678
MGI SNP Detail		 Chr2:25116629 Cpgi11300 1343 bp distal
Gm75683 within coordinates of
 SNP C/T T T T T T C T T T C T T C T
rs262888951
MGI SNP Detail		 Chr2:25116647 Cpgi11300 1361 bp distal
Gm75683 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221325313
MGI SNP Detail		 Chr2:25116671 Cpgi11300 1385 bp distal
Gm75683 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs240705641
MGI SNP Detail		 Chr2:25116820 Cpgi11300 1534 bp distal
Gm75683 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs259767885
MGI SNP Detail		 Chr2:25116840 Cpgi11300 1554 bp distal
Gm75683 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G C G G G G G G C G G G G G G G G G G G G
rs28257677
MGI SNP Detail		 Chr2:25116878 Cpgi11300 1592 bp distal
Gm75683 within coordinates of
 SNP A/G A A A A A A G A A A G A A G A
rs244779470
MGI SNP Detail		 Chr2:25116902 Cpgi11300 1616 bp distal
Gm75683 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262190710
MGI SNP Detail		 Chr2:25117046 Cpgi11300 1760 bp distal
Gm75683 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230784336
MGI SNP Detail		 Chr2:25117191 Cpgi11300 1905 bp distal
Gm75683 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A T A A A A
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Showing SNP(s) 1 - 63 of 63
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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