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Mouse SNP Summary
Symbol
Name
ID
Cpgi12896
CpG island 12896
MGI:5677982

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Showing SNP(s) 1 - 83 of 83

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27641941
MGI SNP Detail
Chr2:180122294 Cpgi12896 1968 bp proximal
SNP C/T T T T T C C T C C C T T
rs231839725
MGI SNP Detail
Chr2:180122302 Cpgi12896 1960 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs247133196
MGI SNP Detail
Chr2:180122305 Cpgi12896 1957 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33676772
MGI SNP Detail
Chr2:180122306 Cpgi12896 1956 bp proximal
SNP C/T T T C T C T
rs29716019
MGI SNP Detail
Chr2:180122326 Cpgi12896 1936 bp proximal
SNP A/T A A T A T A
rs243507787
MGI SNP Detail
Chr2:180122474 Cpgi12896 1788 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27641940
MGI SNP Detail
Chr2:180122581 Cpgi12896 1681 bp proximal
SNP C/G G G G G C G C G C C C G G C G G
rs241722391
MGI SNP Detail
Chr2:180122624 Cpgi12896 1638 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260659158
MGI SNP Detail
Chr2:180122672 Cpgi12896 1590 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs27641939
MGI SNP Detail
Chr2:180122791 Cpgi12896 1471 bp proximal
SNP A/C A A A A A C C A C C C A A C A A
rs233415901
MGI SNP Detail
Chr2:180122827 Cpgi12896 1435 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27641938
MGI SNP Detail
Chr2:180122845 Cpgi12896 1417 bp proximal
SNP C/T C C C C C T C T C T T T C C T C C
rs219607261
MGI SNP Detail
Chr2:180122911 Cpgi12896 1351 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G A A G G G G A G G G G G G G G G G G G G G G G G G G
rs33194996
MGI SNP Detail
Chr2:180122936 Cpgi12896 1326 bp proximal
SNP C/T T T T C T C T
rs261207620
MGI SNP Detail
Chr2:180123215 Cpgi12896 1047 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs221619746
MGI SNP Detail
Chr2:180123221 Cpgi12896 1041 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T T C C C C T C C C C C C T C C C C C C C C C C C C
rs250235377
MGI SNP Detail
Chr2:180123239 Cpgi12896 1023 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33667161
MGI SNP Detail
Chr2:180123241 Cpgi12896 1021 bp proximal
SNP C/T C C T C T
rs49173610
MGI SNP Detail
Chr2:180123259 Cpgi12896 1003 bp proximal
SNP A/G G G G A G
rs241420295
MGI SNP Detail
Chr2:180123273 Cpgi12896 989 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G A A G G G G A G G G G G G G G G G G G G G G G G G G
rs48967989
MGI SNP Detail
Chr2:180123312 Cpgi12896 950 bp proximal
SNP C/G G G G C G
rs27641937
MGI SNP Detail
Chr2:180123359 Cpgi12896 903 bp proximal
SNP A/G G G G G G A G G A A A G G A G G
rs233127876
MGI SNP Detail
Chr2:180123384 Cpgi12896 878 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259769309
MGI SNP Detail
Chr2:180123387 Cpgi12896 875 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs215352553
MGI SNP Detail
Chr2:180123404 Cpgi12896 858 bp proximal
SNP A/C A A A A A A C A C C A A C A C C A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233334308
MGI SNP Detail
Chr2:180123410 Cpgi12896 852 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs49924696
MGI SNP Detail
Chr2:180123434 Cpgi12896 828 bp proximal
SNP C/T T T T C T
rs27641936
MGI SNP Detail
Chr2:180123526 Cpgi12896 736 bp proximal
SNP C/T C C T C T T T C T
rs46202674
MGI SNP Detail
Chr2:180123528 Cpgi12896 734 bp proximal
SNP A/G A A A G A
rs27641935
MGI SNP Detail
Chr2:180123558 Cpgi12896 704 bp proximal
SNP C/T T T T T T C T T C C C T T C T T
rs221538234
MGI SNP Detail
Chr2:180123632 Cpgi12896 630 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs247998859
MGI SNP Detail
Chr2:180123639 Cpgi12896 623 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27641934
MGI SNP Detail
Chr2:180123654 Cpgi12896 608 bp proximal
SNP C/T T T T T T C T T C C C T C T T
rs221090091
MGI SNP Detail
Chr2:180123655 Cpgi12896 607 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241392243
MGI SNP Detail
Chr2:180123765 Cpgi12896 497 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs52425840
MGI SNP Detail
Chr2:180123855 Cpgi12896 407 bp proximal
SNP C/T T T T C T
rs220472448
MGI SNP Detail
Chr2:180123889 Cpgi12896 373 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237055720
MGI SNP Detail
Chr2:180123973 Cpgi12896 289 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs261902303
MGI SNP Detail
Chr2:180124040 Cpgi12896 222 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G A A A A G A A A A A A G A A A A A A A G A A A A
rs27641933
MGI SNP Detail
Chr2:180124143 Cpgi12896 119 bp proximal
SNP C/T T T T T T C T C T C C C T T C T T
rs27641932
MGI SNP Detail
Chr2:180124168 Cpgi12896 94 bp proximal
SNP A/T A A A A A T A T A T T A A A A
rs265406485
MGI SNP Detail
Chr2:180124305 Cpgi12896 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227283188
MGI SNP Detail
Chr2:180124322 Cpgi12896 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C T T C C C C T C C C C C C C C C C C C C C C C C C C
rs243587912
MGI SNP Detail
Chr2:180124553 Cpgi12896 125 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs214162246
MGI SNP Detail
Chr2:180124580 Cpgi12896 152 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229791746
MGI SNP Detail
Chr2:180124581 Cpgi12896 153 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs253158505
MGI SNP Detail
Chr2:180124592 Cpgi12896 164 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T T C C C C T C C C C C C T C C C C C C C C C C C C
rs213113571
MGI SNP Detail
Chr2:180124623 Cpgi12896 195 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs242485765
MGI SNP Detail
Chr2:180124652 Cpgi12896 224 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32862949
MGI SNP Detail
Chr2:180124664 Cpgi12896 236 bp distal
SNP A/G G G A G A G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs581501781
MGI SNP Detail
Chr2:180124668 Cpgi12896 240 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs221060410
MGI SNP Detail
Chr2:180124759 Cpgi12896 331 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs234828692
MGI SNP Detail
Chr2:180124806 Cpgi12896 378 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584811856
MGI SNP Detail
Chr2:180124861 Cpgi12896 433 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs33732553
MGI SNP Detail
Chr2:180124906 Cpgi12896 478 bp distal
SNP A/G G G A G A G
rs220443081
MGI SNP Detail
Chr2:180124907 Cpgi12896 479 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T C C T T T T C T T T T T T T T T T T T T T T T T T T
rs241482546
MGI SNP Detail
Chr2:180124959 Cpgi12896 531 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A
rs27641931
MGI SNP Detail
Chr2:180125064 Cpgi12896 636 bp distal
SNP A/G A A A A A A A A A A A G A
rs264817410
MGI SNP Detail
Chr2:180125081 Cpgi12896 653 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225640077
MGI SNP Detail
Chr2:180125198 Cpgi12896 770 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251209268
MGI SNP Detail
Chr2:180125239 Cpgi12896 811 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs257220962
MGI SNP Detail
Chr2:180125288 Cpgi12896 860 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227573864
MGI SNP Detail
Chr2:180125336 Cpgi12896 908 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243507379
MGI SNP Detail
Chr2:180125418 Cpgi12896 990 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G A A A A G A A A A A A G A A A A A A A G A A A A
rs249677873
MGI SNP Detail
Chr2:180125631 Cpgi12896 1203 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213553202
MGI SNP Detail
Chr2:180125660 Cpgi12896 1232 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs48065862
MGI SNP Detail
Chr2:180125674 Cpgi12896 1246 bp distal
SNP C/T C C T C
rs260490041
MGI SNP Detail
Chr2:180125675 Cpgi12896 1247 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs215522594
MGI SNP Detail
Chr2:180125681 Cpgi12896 1253 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235212712
MGI SNP Detail
Chr2:180125709 Cpgi12896 1281 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251285452
MGI SNP Detail
Chr2:180125723 Cpgi12896 1295 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C C T T T T C T T T T T T C T T T T T T T T T T T
rs27641930
MGI SNP Detail
Chr2:180125726 Cpgi12896 1298 bp distal
SNP C/T T T T T C C T C C C T T T T
rs236432420
MGI SNP Detail
Chr2:180125771 Cpgi12896 1343 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256473606
MGI SNP Detail
Chr2:180125846 Cpgi12896 1418 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226010797
MGI SNP Detail
Chr2:180125988 Cpgi12896 1560 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G A A G G G G A G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248192814
MGI SNP Detail
Chr2:180126054 Cpgi12896 1626 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs27641929
MGI SNP Detail
Chr2:180126067 Cpgi12896 1639 bp distal
SNP A/G G G G G A G A G A A A G G A G G
rs27641928
MGI SNP Detail
Chr2:180126123 Cpgi12896 1695 bp distal
SNP C/T C C C T C T T T C C C
rs237560269
MGI SNP Detail
Chr2:180126218 Cpgi12896 1790 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255879386
MGI SNP Detail
Chr2:180126236 Cpgi12896 1808 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27641927
MGI SNP Detail
Chr2:180126264 Cpgi12896 1836 bp distal
SNP C/G C C C C C C C C C C C G C
rs263897108
MGI SNP Detail
Chr2:180126335 Cpgi12896 1907 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G A A A A G A A A A A A G A A A A A A A A A A A
rs234759314
MGI SNP Detail
Chr2:180126419 Cpgi12896 1991 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 83 of 83

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory