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Mouse SNP Summary
Symbol
Name
ID 		Cpgi13032
CpG island 13032
MGI:5678116

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Showing SNP(s) 1 - 53 of 53

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258904555
MGI SNP Detail		 Chr3:30064433 Cpgi13032 1972 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs229108739
MGI SNP Detail		 Chr3:30064451 Cpgi13032 1954 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs257523365
MGI SNP Detail		 Chr3:30064525 Cpgi13032 1880 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs29838980
MGI SNP Detail		 Chr3:30064533 Cpgi13032 1872 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/T T T T T T T C T T T C T T C T
rs238262637
MGI SNP Detail		 Chr3:30064558 Cpgi13032 1847 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251604519
MGI SNP Detail		 Chr3:30064675 Cpgi13032 1730 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212106330
MGI SNP Detail		 Chr3:30064691 Cpgi13032 1714 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs231138781
MGI SNP Detail		 Chr3:30064763 Cpgi13032 1642 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254821544
MGI SNP Detail		 Chr3:30064768 Cpgi13032 1637 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs29838983
MGI SNP Detail		 Chr3:30064824 Cpgi13032 1581 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/T T T T T T T C T T T C T T C T
rs29839916
MGI SNP Detail		 Chr3:30065032 Cpgi13032 1373 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G G G G G G G A G G G G G G G G
rs29839919
MGI SNP Detail		 Chr3:30065147 Cpgi13032 1258 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/T C C T C C C T C C C C C C C C C T
rs29839922
MGI SNP Detail		 Chr3:30065262 Cpgi13032 1143 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/T C C C C C C T C C C C C C C C
rs245653310
MGI SNP Detail		 Chr3:30065409 Cpgi13032 996 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs29840795
MGI SNP Detail		 Chr3:30065442 Cpgi13032 963 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G G G G G G G G G G A G G A G
rs217674166
MGI SNP Detail		 Chr3:30065460 Cpgi13032 945 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29840798
MGI SNP Detail		 Chr3:30065523 Cpgi13032 882 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G A A A A A A G A A A G A A G A
rs258965596
MGI SNP Detail		 Chr3:30065581 Cpgi13032 824 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229149499
MGI SNP Detail		 Chr3:30065666 Cpgi13032 739 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs252172492
MGI SNP Detail		 Chr3:30065762 Cpgi13032 643 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265673146
MGI SNP Detail		 Chr3:30066362 Cpgi13032 43 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs230214798
MGI SNP Detail		 Chr3:30066404 Cpgi13032 1 bp proximal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256440284
MGI SNP Detail		 Chr3:30066405 Cpgi13032 within coordinates of
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212191197
MGI SNP Detail		 Chr3:30066449 Cpgi13032 within coordinates of
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29840801
MGI SNP Detail		 Chr3:30066495 Cpgi13032 within coordinates of
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/T C C C C C C T C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs587439010
MGI SNP Detail		 Chr3:30066833 Cpgi13032 91 bp distal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248397904
MGI SNP Detail		 Chr3:30066842 Cpgi13032 100 bp distal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs31730507
MGI SNP Detail		 Chr3:30066846 Cpgi13032 104 bp distal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP G/T T G T
rs217799109
MGI SNP Detail		 Chr3:30066894 Cpgi13032 152 bp distal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240397250
MGI SNP Detail		 Chr3:30066914 Cpgi13032 172 bp distal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259747439
MGI SNP Detail		 Chr3:30067042 Cpgi13032 300 bp distal
Mecom within coordinates of
Rr77476 within coordinates of
Tssr32873 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs222407542
MGI SNP Detail		 Chr3:30067566 Cpgi13032 824 bp distal
D3Mit46.3 within coordinates of
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs581854535
MGI SNP Detail		 Chr3:30067759 Cpgi13032 1017 bp distal
D3Mit46.1 within coordinates of
Mecom within coordinates of
Rr77476 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29841654
MGI SNP Detail		 Chr3:30067873 Cpgi13032 1131 bp distal
D3Mit46.1 within coordinates of
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/G G C G G G C G G G G G G G C
rs29841657
MGI SNP Detail		 Chr3:30067876 Cpgi13032 1134 bp distal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/T T T T T T T C T T T T T T T T
rs30660525
MGI SNP Detail		 Chr3:30067932 Cpgi13032 1190 bp distal
Mecom within coordinates of
Rr77476 within coordinates of
 SNP C/T T C C
rs33862190
MGI SNP Detail		 Chr3:30068034 Cpgi13032 1292 bp distal
Mecom within coordinates of
 SNP A/T T A
rs252351204
MGI SNP Detail		 Chr3:30068168 Cpgi13032 1426 bp distal
Mecom within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs226696137
MGI SNP Detail		 Chr3:30068225 Cpgi13032 1483 bp distal
Mecom within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C A C C C C C C A C C C C C C C C C C C C
rs247721102
MGI SNP Detail		 Chr3:30068227 Cpgi13032 1485 bp distal
Mecom within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263507949
MGI SNP Detail		 Chr3:30068274 Cpgi13032 1532 bp distal
Mecom within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs230057763
MGI SNP Detail		 Chr3:30068312 Cpgi13032 1570 bp distal
Mecom within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs29841660
MGI SNP Detail		 Chr3:30068316 Cpgi13032 1574 bp distal
Mecom within coordinates of
 SNP A/G G G G G G G A G G G A G G G
rs29841663
MGI SNP Detail		 Chr3:30068338 Cpgi13032 1596 bp distal
Mecom within coordinates of
 SNP C/T C C C C C C C C C C T C C T C
rs587312432
MGI SNP Detail		 Chr3:30068362 Cpgi13032 1620 bp distal
Mecom within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs225115158
MGI SNP Detail		 Chr3:30068374 Cpgi13032 1632 bp distal
Mecom within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs248102950
MGI SNP Detail		 Chr3:30068382 Cpgi13032 1640 bp distal
Mecom within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217450209
MGI SNP Detail		 Chr3:30068503 Cpgi13032 1761 bp distal
Mecom within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs231993763
MGI SNP Detail		 Chr3:30068507 Cpgi13032 1765 bp distal
Mecom within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs6405570
MGI SNP Detail		 Chr3:30068508 Cpgi13032 1766 bp distal
Mecom within coordinates of
 SNP C/T C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258723107
MGI SNP Detail		 Chr3:30068525 Cpgi13032 1783 bp distal
Mecom within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs214192722
MGI SNP Detail		 Chr3:30068550 Cpgi13032 1808 bp distal
Mecom within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239286917
MGI SNP Detail		 Chr3:30068612 Cpgi13032 1870 bp distal
Mecom within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 53 of 53
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory