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Mouse SNP Summary
Symbol
Name
ID 		Cpgi14564
CpG island 14564
MGI:5679644

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Showing SNP(s) 1 - 73 of 73

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs28150525
MGI SNP Detail		 Chr4:108688355 Btf3l4 within coordinates of
Cpgi14564 1741 bp proximal
 SNP C/T C C C C C C T C C T C C T C
rs224583814
MGI SNP Detail		 Chr4:108688374 Btf3l4 within coordinates of
Cpgi14564 1722 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs28150524
MGI SNP Detail		 Chr4:108688577 Btf3l4 within coordinates of
Cpgi14564 1519 bp proximal
 SNP A/C A A A A A A A A A C A A C A
rs262519450
MGI SNP Detail		 Chr4:108688700 Btf3l4 within coordinates of
Cpgi14564 1396 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs586302654
MGI SNP Detail		 Chr4:108688838 Btf3l4 within coordinates of
Cpgi14564 1258 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs28150523
MGI SNP Detail		 Chr4:108688854 Btf3l4 within coordinates of
Cpgi14564 1242 bp proximal
 SNP A/G G G G G G G G G G G A G G A G
rs28150522
MGI SNP Detail		 Chr4:108688980 Btf3l4 within coordinates of
Cpgi14564 1116 bp proximal
 SNP A/C C C C C C C C C C C A A C C C C
rs28150521
MGI SNP Detail		 Chr4:108689331 Btf3l4 within coordinates of
Cpgi14564 765 bp proximal
 SNP C/T C C C C C C C C T C C C C T C T
rs254688881
MGI SNP Detail		 Chr4:108689346 Btf3l4 within coordinates of
Cpgi14564 750 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs28150520
MGI SNP Detail		 Chr4:108689431 Btf3l4 within coordinates of
Cpgi14564 665 bp proximal
 SNP G/T T T T T T T T T T T G T
rs6289906
MGI SNP Detail		 Chr4:108689514 Btf3l4 within coordinates of
Cpgi14564 582 bp proximal
 SNP A/G G G G G G G G G A G G A G G A G
rs265487429
MGI SNP Detail		 Chr4:108689572 Btf3l4 within coordinates of
Cpgi14564 524 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs232354026
MGI SNP Detail		 Chr4:108689621 Btf3l4 within coordinates of
Cpgi14564 475 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255024760
MGI SNP Detail		 Chr4:108689970 Btf3l4 within coordinates of
Cpgi14564 126 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs214324162
MGI SNP Detail		 Chr4:108690193 Btf3l4 within coordinates of
Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs229740948
MGI SNP Detail		 Chr4:108690241 Btf3l4 within coordinates of
Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs28150519
MGI SNP Detail		 Chr4:108690356 Btf3l4 within coordinates of
Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP C/T C T C
rs216363663
MGI SNP Detail		 Chr4:108690787 Btf3l4 within coordinates of
Cpgi14564 within coordinates of
Rr376990 within coordinates of
Tssr42738 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32846111
MGI SNP Detail		 Chr4:108690878 Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP C/T T T T C
rs258344313
MGI SNP Detail		 Chr4:108690888 Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs224622884
MGI SNP Detail		 Chr4:108690946 Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G C G G G G G G C G G G G G G C G G G G
rs32643289
MGI SNP Detail		 Chr4:108691015 Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP A/C A A A C
rs262156275
MGI SNP Detail		 Chr4:108691016 Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T C T T T T T T C T T T T T T C T T T T
rs220315734
MGI SNP Detail		 Chr4:108691040 Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs28150518
MGI SNP Detail		 Chr4:108691052 Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP A/G G G A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254749274
MGI SNP Detail		 Chr4:108691055 Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C C T C C C C C C C C C C C
rs222110314
MGI SNP Detail		 Chr4:108691132 Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251356275
MGI SNP Detail		 Chr4:108691147 Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs263217517
MGI SNP Detail		 Chr4:108691150 Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs233061091
MGI SNP Detail		 Chr4:108691317 Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs250721461
MGI SNP Detail		 Chr4:108691322 Cpgi14564 within coordinates of
Rr376990 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244179653
MGI SNP Detail		 Chr4:108691343 Cpgi14564 7 bp distal
Rr376990 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A G A A A A A A A A A A A
rs32473238
MGI SNP Detail		 Chr4:108691346 Cpgi14564 10 bp distal
Rr376990 within coordinates of
 SNP A/G A A G A A A
rs240091132
MGI SNP Detail		 Chr4:108691369 Cpgi14564 33 bp distal
Rr376990 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs256781112
MGI SNP Detail		 Chr4:108691392 Cpgi14564 56 bp distal
Rr376990 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G A A G G G G G G G G G G A A A G G G G G G G G G G G G A A
rs216356295
MGI SNP Detail		 Chr4:108691406 Cpgi14564 70 bp distal
Rr376990 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs241553029
MGI SNP Detail		 Chr4:108691622 Cpgi14564 286 bp distal
Rr376990 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs250120373
MGI SNP Detail		 Chr4:108691670 Cpgi14564 334 bp distal
Rr376990 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T G T T T T T T G T T T T T T T G T T T T
rs214654622
MGI SNP Detail		 Chr4:108691692 Cpgi14564 356 bp distal
Rr376990 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs28150517
MGI SNP Detail		 Chr4:108691704 Cpgi14564 368 bp distal
Rr376990 within coordinates of
 SNP A/G A A A G G G G A A
rs249169433
MGI SNP Detail		 Chr4:108691725 Cpgi14564 389 bp distal
Rr376990 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs226330796
MGI SNP Detail		 Chr4:108691755 Cpgi14564 419 bp distal
Rr376990 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs28150516
MGI SNP Detail		 Chr4:108691817 Cpgi14564 481 bp distal
Rr376990 within coordinates of
 SNP C/T C T C C
rs241478023
MGI SNP Detail		 Chr4:108691831 Cpgi14564 495 bp distal
Rr376990 within coordinates of
 SNP A A A
rs262936436
MGI SNP Detail		 Chr4:108691879 Cpgi14564 543 bp distal
Cpgi14565 within coordinates of
Rr376990 within coordinates of
Tssr38314 within coordinates of
Txndc12 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs13468722
MGI SNP Detail		 Chr4:108691978 Cpgi14564 642 bp distal
Cpgi14565 within coordinates of
Rr376990 within coordinates of
Txndc12 within coordinates of
 SNP C/G G G G G G G C C G C C C G G G G G G G G C G G G G G G G G G G G G G C G G G G C G G C C G C C G G G G G G
rs31935151
MGI SNP Detail		 Chr4:108691981 Cpgi14564 645 bp distal
Cpgi14565 within coordinates of
Rr376990 within coordinates of
Txndc12 within coordinates of
 SNP C/G G G C
rs258285498
MGI SNP Detail		 Chr4:108692194 Cpgi14564 858 bp distal
Cpgi14565 within coordinates of
Rr376990 within coordinates of
Txndc12 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs224204603
MGI SNP Detail		 Chr4:108692254 Cpgi14564 918 bp distal
Cpgi14565 within coordinates of
Rr376990 within coordinates of
Txndc12 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs237900974
MGI SNP Detail		 Chr4:108692258 Cpgi14564 922 bp distal
Cpgi14565 within coordinates of
Rr376990 within coordinates of
Txndc12 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260530174
MGI SNP Detail		 Chr4:108692387 Cpgi14564 1051 bp distal
Txndc12 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs28150515
MGI SNP Detail		 Chr4:108692448 Cpgi14564 1112 bp distal
Txndc12 within coordinates of
 SNP A/T A T A A
rs234718405
MGI SNP Detail		 Chr4:108692469 Cpgi14564 1133 bp distal
Txndc12 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252093615
MGI SNP Detail		 Chr4:108692503 Cpgi14564 1167 bp distal
Txndc12 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216764110
MGI SNP Detail		 Chr4:108692683 Cpgi14564 1347 bp distal
Txndc12 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs32687385
MGI SNP Detail		 Chr4:108692913 Cpgi14564 1577 bp distal
Txndc12 within coordinates of
 SNP A/G A A A G
rs244285274
MGI SNP Detail		 Chr4:108692918 Cpgi14564 1582 bp distal
Txndc12 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs249152578
MGI SNP Detail		 Chr4:108693011 Cpgi14564 1675 bp distal
Txndc12 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32683503
MGI SNP Detail		 Chr4:108693043 Cpgi14564 1707 bp distal
Txndc12 within coordinates of
 SNP A/G A A G A A
rs583759345
MGI SNP Detail		 Chr4:108693147 Cpgi14564 1811 bp distal
Txndc12 within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs238911551
MGI SNP Detail		 Chr4:108693182 Cpgi14564 1846 bp distal
Txndc12 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T G T T T G T T T T T T G T T T T T T T T T T T
rs252128663
MGI SNP Detail		 Chr4:108693186 Cpgi14564 1850 bp distal
Txndc12 within coordinates of
 SNP G/T G G G G G G T T G T T G G G G G G G G T G G G G G G G G G G G G G T G G G G T G G T T G T T G G G G G G
rs218096302
MGI SNP Detail		 Chr4:108693190 Cpgi14564 1854 bp distal
Txndc12 within coordinates of
 SNP G/T G G G G G G T T G T T G G G G G G G G T G G G G G G G G G G G G G T G G G G T G G T T G T T G G G G G G
rs238086616
MGI SNP Detail		 Chr4:108693193 Cpgi14564 1857 bp distal
Txndc12 within coordinates of
 SNP G/T T T T T T T G G T G T T T T T T T T G T T T T T T T T T T T T T G T T T T G T T G G T G G T T T T T T
rs583830980
MGI SNP Detail		 Chr4:108693225 Cpgi14564 1889 bp distal
Txndc12 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586864775
MGI SNP Detail		 Chr4:108693228 Cpgi14564 1892 bp distal
Txndc12 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265889253
MGI SNP Detail		 Chr4:108693279 Cpgi14564 1943 bp distal
Txndc12 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233776271
MGI SNP Detail		 Chr4:108693290 Cpgi14564 1954 bp distal
Txndc12 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs247508954
MGI SNP Detail		 Chr4:108693291 Cpgi14564 1955 bp distal
Txndc12 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs32606299
MGI SNP Detail		 Chr4:108693293 Cpgi14564 1957 bp distal
Txndc12 within coordinates of
 SNP G/T T T G G G T
rs229946486
MGI SNP Detail		 Chr4:108693295 Cpgi14564 1959 bp distal
Txndc12 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244228285
MGI SNP Detail		 Chr4:108693316 Cpgi14564 1980 bp distal
Txndc12 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs211787442
MGI SNP Detail		 Chr4:108693318 Cpgi14564 1982 bp distal
Txndc12 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 73 of 73
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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MGI 6.24 		The Jackson Laboratory