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Mouse SNP Summary
Symbol
Name
ID
Cpgi15176
CpG island 15176
MGI:5680256

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Showing SNP(s) 1 - 77 of 77

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258563322
MGI SNP Detail
Chr4:139546439 Cpgi15176 1967 bp proximal
Pax7 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241610404
MGI SNP Detail
Chr4:139546452 Cpgi15176 1954 bp proximal
Pax7 within coordinates of
SNP G G G
rs231569192
MGI SNP Detail
Chr4:139546674 Cpgi15176 1732 bp proximal
Pax7 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs242011188
MGI SNP Detail
Chr4:139546725 Cpgi15176 1681 bp proximal
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261720493
MGI SNP Detail
Chr4:139546735 Cpgi15176 1671 bp proximal
Pax7 within coordinates of
SNP C C C
rs233986683
MGI SNP Detail
Chr4:139546819 Cpgi15176 1587 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs247255263
MGI SNP Detail
Chr4:139546822 Cpgi15176 1584 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs27626118
MGI SNP Detail
Chr4:139546918 Cpgi15176 1488 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP C/T C C T T C T C T T T T C C T T T T
rs238579083
MGI SNP Detail
Chr4:139547082 Cpgi15176 1324 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs27626117
MGI SNP Detail
Chr4:139547089 Cpgi15176 1317 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP C/T C C T C T C T T C C T T
rs578751629
MGI SNP Detail
Chr4:139547236 Cpgi15176 1170 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs52122867
MGI SNP Detail
Chr4:139547315 Cpgi15176 1091 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP A/C A A A A C A A A A A A A A A A C A A A A A A A A A
rs45902696
MGI SNP Detail
Chr4:139547426 Cpgi15176 980 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP A A A
rs250411719
MGI SNP Detail
Chr4:139547442 Cpgi15176 964 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218961517
MGI SNP Detail
Chr4:139547497 Cpgi15176 909 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs581242801
MGI SNP Detail
Chr4:139547504 Cpgi15176 902 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242047991
MGI SNP Detail
Chr4:139547546 Cpgi15176 860 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs261419880
MGI SNP Detail
Chr4:139547613 Cpgi15176 793 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP A/G G G G G A A A A G A A A A A G G G G G A A A G A A A A G A A A G A G G G A G A A A A G A G A A A A A A A A
rs51284464
MGI SNP Detail
Chr4:139547688 Cpgi15176 718 bp proximal
Pax7 within coordinates of
Rr603313 within coordinates of
SNP C C C
rs27626116
MGI SNP Detail
Chr4:139547733 Cpgi15176 673 bp proximal
Pax7 within coordinates of
SNP A/G G G A G G G G G G G G G
rs585052028
MGI SNP Detail
Chr4:139547788 Cpgi15176 618 bp proximal
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579268297
MGI SNP Detail
Chr4:139547793 Cpgi15176 613 bp proximal
Pax7 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs265132241
MGI SNP Detail
Chr4:139547839 Cpgi15176 567 bp proximal
Pax7 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs231164089
MGI SNP Detail
Chr4:139547887 Cpgi15176 519 bp proximal
Pax7 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242705308
MGI SNP Detail
Chr4:139547898 Cpgi15176 508 bp proximal
Pax7 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262188960
MGI SNP Detail
Chr4:139547982 Cpgi15176 424 bp proximal
Pax7 within coordinates of
SNP C/G C G
rs231140663
MGI SNP Detail
Chr4:139547986 Cpgi15176 420 bp proximal
Pax7 within coordinates of
SNP C/G C G
rs212864342
MGI SNP Detail
Chr4:139548137 Cpgi15176 269 bp proximal
Pax7 within coordinates of
SNP A A A
rs254954206
MGI SNP Detail
Chr4:139548156 Cpgi15176 250 bp proximal
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C T C C C C C C C T C C C C C T C C C C C C
rs228024601
MGI SNP Detail
Chr4:139548263 Cpgi15176 143 bp proximal
Pax7 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs27626115
MGI SNP Detail
Chr4:139548345 Cpgi15176 61 bp proximal
Pax7 within coordinates of
SNP A/G A G A A A A A
rs215433553
MGI SNP Detail
Chr4:139548487 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs240661758
MGI SNP Detail
Chr4:139548495 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs250590598
MGI SNP Detail
Chr4:139548530 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs215050059
MGI SNP Detail
Chr4:139548583 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs32337824
MGI SNP Detail
Chr4:139548702 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP C/T C C C T T T
rs250438343
MGI SNP Detail
Chr4:139548713 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31969554
MGI SNP Detail
Chr4:139548726 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP C/T T T C C C
rs235611654
MGI SNP Detail
Chr4:139548797 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs264236694
MGI SNP Detail
Chr4:139548835 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32751026
MGI SNP Detail
Chr4:139548864 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP A/C C C A C A
rs249412725
MGI SNP Detail
Chr4:139549024 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A
rs257242092
MGI SNP Detail
Chr4:139549073 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs27626114
MGI SNP Detail
Chr4:139549188 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP A/G A G A A A A A
rs236129502
MGI SNP Detail
Chr4:139549203 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214800241
MGI SNP Detail
Chr4:139549266 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP A A A
rs228811564
MGI SNP Detail
Chr4:139549278 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236334895
MGI SNP Detail
Chr4:139549318 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP C C C
rs265405541
MGI SNP Detail
Chr4:139549397 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232084672
MGI SNP Detail
Chr4:139549425 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255014569
MGI SNP Detail
Chr4:139549469 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214471154
MGI SNP Detail
Chr4:139549477 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224116207
MGI SNP Detail
Chr4:139549498 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244122524
MGI SNP Detail
Chr4:139549506 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216674819
MGI SNP Detail
Chr4:139549547 Cpgi15176 within coordinates of
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236309739
MGI SNP Detail
Chr4:139549863 Cpgi15176 221 bp distal
Pax7 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32170107
MGI SNP Detail
Chr4:139549892 Cpgi15176 250 bp distal
Pax7 within coordinates of
SNP C/T C C T T T
rs216305621
MGI SNP Detail
Chr4:139549958 Cpgi15176 316 bp distal
Pax7 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs238737456
MGI SNP Detail
Chr4:139550132 Cpgi15176 490 bp distal
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262122412
MGI SNP Detail
Chr4:139550181 Cpgi15176 539 bp distal
Pax7 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs32329123
MGI SNP Detail
Chr4:139550247 Cpgi15176 605 bp distal
Pax7 within coordinates of
SNP A/G A A A G G G
rs236168826
MGI SNP Detail
Chr4:139550252 Cpgi15176 610 bp distal
Pax7 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs249118741
MGI SNP Detail
Chr4:139550293 Cpgi15176 651 bp distal
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27626113
MGI SNP Detail
Chr4:139550313 Cpgi15176 671 bp distal
Pax7 within coordinates of
SNP C/T C C C C T T T T T
rs251942804
MGI SNP Detail
Chr4:139550441 Cpgi15176 799 bp distal
Pax7 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs263357667
MGI SNP Detail
Chr4:139550953 Cpgi15176 1311 bp distal
Cpgi15177 within coordinates of
Pax7 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27626112
MGI SNP Detail
Chr4:139550986 Cpgi15176 1344 bp distal
Cpgi15177 within coordinates of
Pax7 within coordinates of
SNP A/G G A G G G G G G
rs242709528
MGI SNP Detail
Chr4:139551001 Cpgi15176 1359 bp distal
Cpgi15177 within coordinates of
Pax7 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265228800
MGI SNP Detail
Chr4:139551053 Cpgi15176 1411 bp distal
Cpgi15177 within coordinates of
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223971732
MGI SNP Detail
Chr4:139551153 Cpgi15176 1511 bp distal
Cpgi15177 within coordinates of
Pax7 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244161060
MGI SNP Detail
Chr4:139551277 Cpgi15176 1635 bp distal
Cpgi15177 within coordinates of
Pax7 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27626111
MGI SNP Detail
Chr4:139551407 Cpgi15176 1765 bp distal
Cpgi15177 within coordinates of
Pax7 within coordinates of
SNP A/T T T A T T A A A A A A A
rs229108176
MGI SNP Detail
Chr4:139551469 Cpgi15176 1827 bp distal
Cpgi15177 within coordinates of
Pax7 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs257263456
MGI SNP Detail
Chr4:139551489 Cpgi15176 1847 bp distal
Cpgi15177 within coordinates of
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216625348
MGI SNP Detail
Chr4:139551537 Cpgi15176 1895 bp distal
Cpgi15177 within coordinates of
Pax7 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32004907
MGI SNP Detail
Chr4:139551566 Cpgi15176 1924 bp distal
Cpgi15177 within coordinates of
Pax7 within coordinates of
SNP C/T T C T C
rs264987078
MGI SNP Detail
Chr4:139551583 Cpgi15176 1941 bp distal
Cpgi15177 within coordinates of
Pax7 within coordinates of
SNP C/T C T
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Showing SNP(s) 1 - 77 of 77

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory