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Mouse SNP Summary
Symbol
Name
ID 		Cpgi16942
CpG island 16942
MGI:5682018

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221823877
MGI SNP Detail
Alliance Variant		 Chr5:142156305 Cpgi16942 1918 bp proximal
Sdk1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240270986
MGI SNP Detail
Alliance Variant		 Chr5:142156499 Cpgi16942 1724 bp proximal
Sdk1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs33483961
MGI SNP Detail
Alliance Variant		 Chr5:142156608 Cpgi16942 1615 bp proximal
Sdk1 Intron
 SNP A/G A G A G G G
rs226385013
MGI SNP Detail
Alliance Variant		 Chr5:142156712 Cpgi16942 1511 bp proximal
Sdk1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243586374
MGI SNP Detail
Alliance Variant		 Chr5:142156790 Cpgi16942 1433 bp proximal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs264969394
MGI SNP Detail
Alliance Variant		 Chr5:142156823 Cpgi16942 1400 bp proximal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs227728663
MGI SNP Detail
Alliance Variant		 Chr5:142157021 Cpgi16942 1202 bp proximal
Sdk1 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs260294408
MGI SNP Detail
Alliance Variant		 Chr5:142157169 Cpgi16942 1054 bp proximal
Sdk1 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs216809598
MGI SNP Detail
Alliance Variant		 Chr5:142157227 Cpgi16942 996 bp proximal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228208624
MGI SNP Detail
Alliance Variant		 Chr5:142157272 Cpgi16942 951 bp proximal
Sdk1 Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs246702791
MGI SNP Detail
Alliance Variant		 Chr5:142157433 Cpgi16942 790 bp proximal
Sdk1 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs215047537
MGI SNP Detail
Alliance Variant		 Chr5:142157570 Cpgi16942 653 bp proximal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232693548
MGI SNP Detail
Alliance Variant		 Chr5:142157602 Cpgi16942 621 bp proximal
Sdk1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257054298
MGI SNP Detail
Alliance Variant		 Chr5:142157668 Cpgi16942 555 bp proximal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213247343
MGI SNP Detail
Alliance Variant		 Chr5:142157709 Cpgi16942 514 bp proximal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234289288
MGI SNP Detail
Alliance Variant		 Chr5:142157713 Cpgi16942 510 bp proximal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264040849
MGI SNP Detail
Alliance Variant		 Chr5:142157781 Cpgi16942 442 bp proximal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221796607
MGI SNP Detail
Alliance Variant		 Chr5:142157865 Cpgi16942 358 bp proximal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239773863
MGI SNP Detail
Alliance Variant		 Chr5:142157887 Cpgi16942 336 bp proximal
Sdk1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251053971
MGI SNP Detail
Alliance Variant		 Chr5:142157889 Cpgi16942 334 bp proximal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220267422
MGI SNP Detail
Alliance Variant		 Chr5:142157927 Cpgi16942 296 bp proximal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246332931
MGI SNP Detail
Alliance Variant		 Chr5:142158055 Cpgi16942 168 bp proximal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs262121173
MGI SNP Detail
Alliance Variant		 Chr5:142158163 Cpgi16942 60 bp proximal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220565395
MGI SNP Detail
Alliance Variant		 Chr5:142158231 Cpgi16942 within coordinates of
Sdk1 Coding-Synonymous
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs248381442
MGI SNP Detail
Alliance Variant		 Chr5:142158300 Cpgi16942 within coordinates of
Sdk1 Coding-Synonymous
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs36499038
MGI SNP Detail
Alliance Variant		 Chr5:142158321 Cpgi16942 within coordinates of
Sdk1 Coding-Synonymous
 SNP A/G G G G G G G G G G G A G G G
rs260679298
MGI SNP Detail
Alliance Variant		 Chr5:142158381 Cpgi16942 within coordinates of
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228155536
MGI SNP Detail
Alliance Variant		 Chr5:142158386 Cpgi16942 within coordinates of
Sdk1 Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs246662739
MGI SNP Detail
Alliance Variant		 Chr5:142158438 Cpgi16942 42 bp distal
Sdk1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258548851
MGI SNP Detail
Alliance Variant		 Chr5:142158510 Cpgi16942 114 bp distal
Sdk1 Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs230742204
MGI SNP Detail
Alliance Variant		 Chr5:142158526 Cpgi16942 130 bp distal
Sdk1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255100492
MGI SNP Detail
Alliance Variant		 Chr5:142158558 Cpgi16942 162 bp distal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212771742
MGI SNP Detail
Alliance Variant		 Chr5:142158620 Cpgi16942 224 bp distal
Sdk1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs236215971
MGI SNP Detail
Alliance Variant		 Chr5:142158649 Cpgi16942 253 bp distal
Sdk1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254712858
MGI SNP Detail
Alliance Variant		 Chr5:142158670 Cpgi16942 274 bp distal
Sdk1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216349805
MGI SNP Detail
Alliance Variant		 Chr5:142158701 Cpgi16942 305 bp distal
Sdk1 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs581476883
MGI SNP Detail
Alliance Variant		 Chr5:142158730 Cpgi16942 334 bp distal
Sdk1 Intron
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs233320619
MGI SNP Detail
Alliance Variant		 Chr5:142158759 Cpgi16942 363 bp distal
Sdk1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251022494
MGI SNP Detail
Alliance Variant		 Chr5:142158811 Cpgi16942 415 bp distal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs583517284
MGI SNP Detail
Alliance Variant		 Chr5:142159027 Cpgi16942 631 bp distal
Sdk1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219872776
MGI SNP Detail
Alliance Variant		 Chr5:142159038 Cpgi16942 642 bp distal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236426497
MGI SNP Detail
Alliance Variant		 Chr5:142159039 Cpgi16942 643 bp distal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261726386
MGI SNP Detail
Alliance Variant		 Chr5:142159083 Cpgi16942 687 bp distal
Sdk1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220819130
MGI SNP Detail
Alliance Variant		 Chr5:142159121 Cpgi16942 725 bp distal
Sdk1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs587269783
MGI SNP Detail
Alliance Variant		 Chr5:142159129 Cpgi16942 733 bp distal
Sdk1 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs581297023
MGI SNP Detail
Alliance Variant		 Chr5:142159130 Cpgi16942 734 bp distal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs578674266
MGI SNP Detail
Alliance Variant		 Chr5:142159131 Cpgi16942 735 bp distal
Sdk1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251845417
MGI SNP Detail
Alliance Variant		 Chr5:142159138 Cpgi16942 742 bp distal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260968883
MGI SNP Detail
Alliance Variant		 Chr5:142159215 Cpgi16942 819 bp distal
Sdk1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs221950875
MGI SNP Detail
Alliance Variant		 Chr5:142159230 Cpgi16942 834 bp distal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240600867
MGI SNP Detail
Alliance Variant		 Chr5:142159237 Cpgi16942 841 bp distal
Sdk1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258467757
MGI SNP Detail
Alliance Variant		 Chr5:142159238 Cpgi16942 842 bp distal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230445914
MGI SNP Detail
Alliance Variant		 Chr5:142159244 Cpgi16942 848 bp distal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs48008741
MGI SNP Detail
Alliance Variant		 Chr5:142159262 Cpgi16942 866 bp distal
Sdk1 Intron
 SNP G G G G
rs250554070
MGI SNP Detail
Alliance Variant		 Chr5:142159316 Cpgi16942 920 bp distal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264822706
MGI SNP Detail
Alliance Variant		 Chr5:142159501 Cpgi16942 1105 bp distal
Sdk1 Coding-Synonymous
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs227540101
MGI SNP Detail
Alliance Variant		 Chr5:142159513 Cpgi16942 1117 bp distal
Sdk1 Coding-Synonymous
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A G A A A A A A A A A A A A A A G A A A A
rs247402340
MGI SNP Detail
Alliance Variant		 Chr5:142159578 Cpgi16942 1182 bp distal
Sdk1 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs216691209
MGI SNP Detail
Alliance Variant		 Chr5:142159585 Cpgi16942 1189 bp distal
Sdk1 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs233238422
MGI SNP Detail
Alliance Variant		 Chr5:142159597 Cpgi16942 1201 bp distal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244985933
MGI SNP Detail
Alliance Variant		 Chr5:142159645 Cpgi16942 1249 bp distal
Sdk1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A A G A A A A A A A A A A A A A A G A A A A
rs214461286
MGI SNP Detail
Alliance Variant		 Chr5:142159658 Cpgi16942 1262 bp distal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C T C C C C C C C C C C C C C C C C C C C
rs237751472
MGI SNP Detail
Alliance Variant		 Chr5:142159684 Cpgi16942 1288 bp distal
Sdk1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A A G A A A A A A A A A A A A A A G A A A A
rs29774172
MGI SNP Detail
Alliance Variant		 Chr5:142159749 Cpgi16942 1353 bp distal
Sdk1 Intron
 SNP A/G A A G G G
rs220420608
MGI SNP Detail
Alliance Variant		 Chr5:142159968 Cpgi16942 1572 bp distal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs240651228
MGI SNP Detail
Alliance Variant		 Chr5:142160054 Cpgi16942 1658 bp distal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs254770699
MGI SNP Detail
Alliance Variant		 Chr5:142160199 Cpgi16942 1803 bp distal
Sdk1 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs222234617
MGI SNP Detail
Alliance Variant		 Chr5:142160314 Cpgi16942 1918 bp distal
Sdk1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs240566601
MGI SNP Detail
Alliance Variant		 Chr5:142160359 Cpgi16942 1963 bp distal
Sdk1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 69 of 69
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory