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Mouse SNP Summary
Symbol
Name
ID
Cpgi17439
CpG island 17439
MGI:5682514

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Showing SNP(s) 1 - 69 of 69

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs47555289
MGI SNP Detail
Chr6:52234598 Cpgi17439 1947 bp proximal
SNP G G G G
rs229218451
MGI SNP Detail
Chr6:52234614 Cpgi17439 1931 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs243535607
MGI SNP Detail
Chr6:52234667 Cpgi17439 1878 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs256737905
MGI SNP Detail
Chr6:52234715 Cpgi17439 1830 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T
rs229876573
MGI SNP Detail
Chr6:52234777 Cpgi17439 1768 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs586163209
MGI SNP Detail
Chr6:52234863 Cpgi17439 1682 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs251173280
MGI SNP Detail
Chr6:52234914 Cpgi17439 1631 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215912123
MGI SNP Detail
Chr6:52235030 Cpgi17439 1515 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T A T T A T T T T T T A T T T T T T T A T T T A
rs238424558
MGI SNP Detail
Chr6:52235070 Cpgi17439 1475 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
rs246964228
MGI SNP Detail
Chr6:52235176 Cpgi17439 1369 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217536705
MGI SNP Detail
Chr6:52235182 Cpgi17439 1363 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs230224868
MGI SNP Detail
Chr6:52235343 Cpgi17439 1202 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49311359
MGI SNP Detail
Chr6:52235424 Cpgi17439 1121 bp proximal
SNP A/C A A C
rs219685653
MGI SNP Detail
Chr6:52235494 Cpgi17439 1051 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs239081616
MGI SNP Detail
Chr6:52235568 Cpgi17439 977 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
rs47479778
MGI SNP Detail
Chr6:52235668 Cpgi17439 877 bp proximal
SNP C/G G G C
rs225434782
MGI SNP Detail
Chr6:52235739 Cpgi17439 806 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs247593935
MGI SNP Detail
Chr6:52235800 Cpgi17439 745 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs261394077
MGI SNP Detail
Chr6:52235854 Cpgi17439 691 bp proximal
Hoxa13 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs223385608
MGI SNP Detail
Chr6:52236007 Cpgi17439 538 bp proximal
Hoxa13 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs237068158
MGI SNP Detail
Chr6:52236022 Cpgi17439 523 bp proximal
Hoxa13 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256796118
MGI SNP Detail
Chr6:52236200 Cpgi17439 345 bp proximal
Hoxa13 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29871939
MGI SNP Detail
Chr6:52236272 Cpgi17439 273 bp proximal
Hoxa13 within coordinates of
SNP C/T C T C
rs229851094
MGI SNP Detail
Chr6:52236286 Cpgi17439 259 bp proximal
Hoxa13 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs255879790
MGI SNP Detail
Chr6:52236356 Cpgi17439 189 bp proximal
Hoxa13 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262994149
MGI SNP Detail
Chr6:52236397 Cpgi17439 148 bp proximal
Hoxa13 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs232688280
MGI SNP Detail
Chr6:52236646 Cpgi17439 within coordinates of
Hoxa13 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs580053217
MGI SNP Detail
Chr6:52236768 Cpgi17439 within coordinates of
Hoxa13 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T C T T T T T T T T T T T
rs246521663
MGI SNP Detail
Chr6:52237121 Cpgi17439 within coordinates of
Hoxa13 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs583872130
MGI SNP Detail
Chr6:52237397 Cpgi17439 within coordinates of
Hoxa13 within coordinates of
SNP A/G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs583132429
MGI SNP Detail
Chr6:52237834 Cpgi17439 within coordinates of
Hoxa13 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586570351
MGI SNP Detail
Chr6:52237956 Cpgi17439 within coordinates of
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs581129004
MGI SNP Detail
Chr6:52237957 Cpgi17439 within coordinates of
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs217163319
MGI SNP Detail
Chr6:52237994 Cpgi17439 within coordinates of
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs223769444
MGI SNP Detail
Chr6:52238005 Cpgi17439 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs243292382
MGI SNP Detail
Chr6:52238063 Cpgi17439 within coordinates of
SNP G/T T T T T T T T T G T T T T T T T T
rs214641044
MGI SNP Detail
Chr6:52238148 Cpgi17439 within coordinates of
Gm56042 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs237371256
MGI SNP Detail
Chr6:52238210 Cpgi17439 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs262951101
MGI SNP Detail
Chr6:52238224 Cpgi17439 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs216828803
MGI SNP Detail
Chr6:52238259 Cpgi17439 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235581656
MGI SNP Detail
Chr6:52238343 Cpgi17439 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs255473117
MGI SNP Detail
Chr6:52238351 Cpgi17439 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218306711
MGI SNP Detail
Chr6:52238375 Cpgi17439 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A C C A A A C A C A A A A A A A A A A A A A A A A A A A
rs237082421
MGI SNP Detail
Chr6:52238384 Cpgi17439 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs250260308
MGI SNP Detail
Chr6:52238385 Cpgi17439 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs222100334
MGI SNP Detail
Chr6:52238570 Cpgi17439 79 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244134237
MGI SNP Detail
Chr6:52238580 Cpgi17439 89 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584518084
MGI SNP Detail
Chr6:52238700 Cpgi17439 209 bp distal
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265490705
MGI SNP Detail
Chr6:52238746 Cpgi17439 255 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232125965
MGI SNP Detail
Chr6:52238787 Cpgi17439 296 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240500965
MGI SNP Detail
Chr6:52238822 Cpgi17439 331 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs259643321
MGI SNP Detail
Chr6:52238910 Cpgi17439 419 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C C
rs223243846
MGI SNP Detail
Chr6:52239057 Cpgi17439 566 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243351163
MGI SNP Detail
Chr6:52239109 Cpgi17439 618 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs214103255
MGI SNP Detail
Chr6:52239116 Cpgi17439 625 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs231482897
MGI SNP Detail
Chr6:52239141 Cpgi17439 650 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs252729283
MGI SNP Detail
Chr6:52239214 Cpgi17439 723 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217589116
MGI SNP Detail
Chr6:52239215 Cpgi17439 724 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs235636062
MGI SNP Detail
Chr6:52239340 Cpgi17439 849 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C C C C C C C C G C C C C C C C C C C C C
rs255298105
MGI SNP Detail
Chr6:52239412 Cpgi17439 921 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212248738
MGI SNP Detail
Chr6:52239449 Cpgi17439 958 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs230810964
MGI SNP Detail
Chr6:52239631 Cpgi17439 1140 bp distal
Gm56043 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262104065
MGI SNP Detail
Chr6:52239746 Cpgi17439 1255 bp distal
Gm56043 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222490704
MGI SNP Detail
Chr6:52240023 Cpgi17439 1532 bp distal
Hottip within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs246721795
MGI SNP Detail
Chr6:52240063 Cpgi17439 1572 bp distal
Gm56044 within coordinates of
Hottip within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258668737
MGI SNP Detail
Chr6:52240090 Cpgi17439 1599 bp distal
Gm56044 within coordinates of
Hottip within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579103929
MGI SNP Detail
Chr6:52240154 Cpgi17439 1663 bp distal
Gm56044 within coordinates of
Hottip within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225110440
MGI SNP Detail
Chr6:52240269 Cpgi17439 1778 bp distal
Gm56044 within coordinates of
Hottip within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs240523336
MGI SNP Detail
Chr6:52240437 Cpgi17439 1946 bp distal
Hottip within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
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Showing SNP(s) 1 - 69 of 69

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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory