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Mouse SNP Summary
Symbol
Name
ID 		Cpgi18152
CpG island 18152
MGI:5683227

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Showing SNP(s) 1 - 56 of 56

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs236223239
MGI SNP Detail		 Chr6:144991865 Bcat1 within coordinates of
Cpgi18152 1974 bp proximal
 SNP A/C A C
rs51975075
MGI SNP Detail		 Chr6:144991873 Bcat1 within coordinates of
Cpgi18152 1966 bp proximal
 SNP G G
rs266239223
MGI SNP Detail		 Chr6:144991949 Bcat1 within coordinates of
Cpgi18152 1890 bp proximal
 SNP A/G G A
rs30603604
MGI SNP Detail		 Chr6:144992090 Bcat1 within coordinates of
Cpgi18152 1749 bp proximal
 SNP C/T C C C T T T C T T T T C
rs30365803
MGI SNP Detail		 Chr6:144992141 Bcat1 within coordinates of
Cpgi18152 1698 bp proximal
 SNP C/G G G C C C G
rs30565114
MGI SNP Detail		 Chr6:144992178 Bcat1 within coordinates of
Cpgi18152 1661 bp proximal
 SNP A/G G G A A A G
rs226678930
MGI SNP Detail		 Chr6:144992197 Bcat1 within coordinates of
Cpgi18152 1642 bp proximal
 SNP A/G A G
rs244892450
MGI SNP Detail		 Chr6:144992201 Bcat1 within coordinates of
Cpgi18152 1638 bp proximal
 SNP C/T C T
rs32237303
MGI SNP Detail		 Chr6:144992317 Bcat1 within coordinates of
Cpgi18152 1522 bp proximal
 SNP C/T T T T T T T C T T T T T T T
rs212708888
MGI SNP Detail		 Chr6:144992546 Bcat1 within coordinates of
Cpgi18152 1293 bp proximal
 SNP A/G G A
rs30513763
MGI SNP Detail		 Chr6:144992554 Bcat1 within coordinates of
Cpgi18152 1285 bp proximal
 SNP A/G G G A A G
rs30957464
MGI SNP Detail		 Chr6:144992627 Bcat1 within coordinates of
Cpgi18152 1212 bp proximal
 SNP C/T T T T C T C C C C C C T
rs254714834
MGI SNP Detail		 Chr6:144992628 Bcat1 within coordinates of
Cpgi18152 1211 bp proximal
 SNP A/G G A
rs32238246
MGI SNP Detail		 Chr6:144992693 Bcat1 within coordinates of
Cpgi18152 1146 bp proximal
 SNP C/G G C C C C C C C
rs30017169
MGI SNP Detail		 Chr6:144992696 Bcat1 within coordinates of
Cpgi18152 1143 bp proximal
 SNP A/G A A G
rs30803240
MGI SNP Detail		 Chr6:144992697 Bcat1 within coordinates of
Cpgi18152 1142 bp proximal
 SNP A/G A A G
rs32238248
MGI SNP Detail		 Chr6:144992908 Bcat1 within coordinates of
Cpgi18152 931 bp proximal
Rr641040 within coordinates of
 SNP C/G C C C C C C G C C C C C
rs30859343
MGI SNP Detail		 Chr6:144993030 Bcat1 within coordinates of
Cpgi18152 809 bp proximal
Rr641040 within coordinates of
 SNP C/T T T C T C C C C C C C T
rs29967950
MGI SNP Detail		 Chr6:144993191 Bcat1 within coordinates of
Cpgi18152 648 bp proximal
Rr641040 within coordinates of
 SNP C/T C C C T C C T T C T T T C
rs30363839
MGI SNP Detail		 Chr6:144993258 Bcat1 within coordinates of
Cpgi18152 581 bp proximal
Rr641040 within coordinates of
Tssr64031 within coordinates of
 SNP A/G G G A A G
rs30694394
MGI SNP Detail		 Chr6:144993264 Bcat1 within coordinates of
Cpgi18152 575 bp proximal
Gm15687 within coordinates of
Rr641040 within coordinates of
Tssr64031 within coordinates of
 SNP A/C A A C
rs29884858
MGI SNP Detail		 Chr6:144993268 Bcat1 within coordinates of
Cpgi18152 571 bp proximal
Gm15687 within coordinates of
Rr641040 within coordinates of
Tssr64031 within coordinates of
 SNP A/G A A G G A
rs30313406
MGI SNP Detail		 Chr6:144993377 Bcat1 within coordinates of
Cpgi18152 462 bp proximal
Gm15687 within coordinates of
Gm26666 within coordinates of
Tssr64033 within coordinates of
 SNP C/T C C C T C C T T T T T T T C C C C C
rs219874198
MGI SNP Detail		 Chr6:144993399 Bcat1 within coordinates of
Cpgi18152 440 bp proximal
Gm15687 within coordinates of
Gm26666 within coordinates of
Tssr64034 within coordinates of
 SNP C/G C G
rs231194469
MGI SNP Detail		 Chr6:144993861 Bcat1 within coordinates of
Cpgi18152 within coordinates of
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/G G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs30470302
MGI SNP Detail		 Chr6:144993948 Bcat1 within coordinates of
Cpgi18152 within coordinates of
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP C/G C G G C
rs30266192
MGI SNP Detail		 Chr6:144993968 Bcat1 within coordinates of
Cpgi18152 within coordinates of
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/C A C C A
rs244339856
MGI SNP Detail		 Chr6:144994041 Bcat1 within coordinates of
Cpgi18152 within coordinates of
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP C/T C T
rs264629800
MGI SNP Detail		 Chr6:144994084 Bcat1 within coordinates of
Cpgi18152 within coordinates of
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/G G A
rs226634426
MGI SNP Detail		 Chr6:144994403 Bcat1 within coordinates of
Cpgi18152 within coordinates of
Gm15687 within coordinates of
Gm26666 within coordinates of
Tssr64039 within coordinates of
 SNP C/G G C
rs246532858
MGI SNP Detail		 Chr6:144994555 Bcat1 within coordinates of
Cpgi18152 within coordinates of
Gm15687 within coordinates of
Gm26666 within coordinates of
Rr641041 within coordinates of
 SNP A/T A T
rs32238253
MGI SNP Detail		 Chr6:144994802 Bcat1 within coordinates of
Cpgi18152 within coordinates of
Gm15687 within coordinates of
Gm26666 within coordinates of
Rr641041 within coordinates of
Tssr2055 within coordinates of
 SNP G/T G G G G G G T G G G G
rs30763704
MGI SNP Detail		 Chr6:144994895 Bcat1 within coordinates of
Cpgi18152 within coordinates of
Gm15687 within coordinates of
Gm26666 within coordinates of
Rr641041 within coordinates of
 SNP A/T T T T A T T A A T A A A A A T
rs30410502
MGI SNP Detail		 Chr6:144994960 Bcat1 within coordinates of
Cpgi18152 21 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
Rr641041 within coordinates of
 SNP C/T C C C T C C T T C T T T C C
rs30277105
MGI SNP Detail		 Chr6:144995422 Bcat1 within coordinates of
Cpgi18152 483 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP C/T T T C T C C T C C C C T T
rs30810440
MGI SNP Detail		 Chr6:144995716 Bcat1 within coordinates of
Cpgi18152 777 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP C/G C C G
rs256919773
MGI SNP Detail		 Chr6:144995759 Bcat1 within coordinates of
Cpgi18152 820 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP C/T C T
rs30563439
MGI SNP Detail		 Chr6:144995764 Bcat1 within coordinates of
Cpgi18152 825 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/C C C A A C
rs30756936
MGI SNP Detail		 Chr6:144995821 Bcat1 within coordinates of
Cpgi18152 882 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/G A A G
rs30513140
MGI SNP Detail		 Chr6:144995827 Bcat1 within coordinates of
Cpgi18152 888 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/T T T A
rs29871845
MGI SNP Detail		 Chr6:144995832 Bcat1 within coordinates of
Cpgi18152 893 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP C/T C C T
rs47202491
MGI SNP Detail		 Chr6:144996076 Bcat1 within coordinates of
Cpgi18152 1137 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/C C C A
rs30265392
MGI SNP Detail		 Chr6:144996118 Bcat1 within coordinates of
Cpgi18152 1179 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/G G G G A G G A A A A A A G
rs260011210
MGI SNP Detail		 Chr6:144996214 Bcat1 within coordinates of
Cpgi18152 1275 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/G G A
rs32239328
MGI SNP Detail		 Chr6:144996342 Bcat1 within coordinates of
Cpgi18152 1403 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP G/T G G G T G G G
rs217988849
MGI SNP Detail		 Chr6:144996380 Bcat1 within coordinates of
Cpgi18152 1441 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/T A T
rs30320602
MGI SNP Detail		 Chr6:144996381 Bcat1 within coordinates of
Cpgi18152 1442 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP C/T T T C T C C C C C C T
rs30938038
MGI SNP Detail		 Chr6:144996395 Bcat1 within coordinates of
Cpgi18152 1456 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/G G G A G A A A A A A A G
rs214053846
MGI SNP Detail		 Chr6:144996420 Bcat1 within coordinates of
Cpgi18152 1481 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP C/T T C
rs32239332
MGI SNP Detail		 Chr6:144996444 Bcat1 within coordinates of
Cpgi18152 1505 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/G G G A G G A G A A A A G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs52283769
MGI SNP Detail		 Chr6:144996577 Bcat1 within coordinates of
Cpgi18152 1638 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP C/T C T
rs248722588
MGI SNP Detail		 Chr6:144996580 Bcat1 within coordinates of
Cpgi18152 1641 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/G G A
rs30463963
MGI SNP Detail		 Chr6:144996737 Bcat1 within coordinates of
Cpgi18152 1798 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/G G G G A
rs46164103
MGI SNP Detail		 Chr6:144996771 Bcat1 within coordinates of
Cpgi18152 1832 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/C C C A
rs211840873
MGI SNP Detail		 Chr6:144996779 Bcat1 within coordinates of
Cpgi18152 1840 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/G G A
rs32239333
MGI SNP Detail		 Chr6:144996810 Bcat1 within coordinates of
Cpgi18152 1871 bp distal
Gm15687 within coordinates of
Gm26666 within coordinates of
 SNP A/G G G G G G G A G G G G G
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Showing SNP(s) 1 - 56 of 56
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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