About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Cpgi18840
CpG island 18840
MGI:5683915

<< first < prev1 next > last >>
Showing SNP(s) 1 - 74 of 74

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257137708
MGI SNP Detail
Chr7:30905621 Cpgi18840 1999 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs222705740
MGI SNP Detail
Chr7:30905622 Cpgi18840 1998 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G G A A G G G G G G G G G G G G G G
rs242853150
MGI SNP Detail
Chr7:30905634 Cpgi18840 1986 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs263253585
MGI SNP Detail
Chr7:30905648 Cpgi18840 1972 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs50802377
MGI SNP Detail
Chr7:30905719 Cpgi18840 1901 bp proximal
SNP C/G G G G G G G G G G G G G G C G
rs47841900
MGI SNP Detail
Chr7:30905725 Cpgi18840 1895 bp proximal
SNP A/G G G G G G G A G G G G G G G G
rs47206151
MGI SNP Detail
Chr7:30905772 Cpgi18840 1848 bp proximal
SNP C/T T T T C T T T T T T
rs52399435
MGI SNP Detail
Chr7:30905840 Cpgi18840 1780 bp proximal
SNP A/G G G G G G G A G G G G G G G G
rs242247864
MGI SNP Detail
Chr7:30905931 Cpgi18840 1689 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs212874615
MGI SNP Detail
Chr7:30905932 Cpgi18840 1688 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs49187902
MGI SNP Detail
Chr7:30906061 Cpgi18840 1559 bp proximal
SNP A/C A A C A C
rs247152436
MGI SNP Detail
Chr7:30906149 Cpgi18840 1471 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs587425736
MGI SNP Detail
Chr7:30906222 Cpgi18840 1398 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs581834055
MGI SNP Detail
Chr7:30906244 Cpgi18840 1376 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs215333773
MGI SNP Detail
Chr7:30906307 Cpgi18840 1313 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs240693251
MGI SNP Detail
Chr7:30906316 Cpgi18840 1304 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs47888553
MGI SNP Detail
Chr7:30906336 Cpgi18840 1284 bp proximal
SNP C C C C C C
rs582780556
MGI SNP Detail
Chr7:30906528 Cpgi18840 1092 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs215433234
MGI SNP Detail
Chr7:30906556 Cpgi18840 1064 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A G A A G G A A A A A A A A A A A A A A
rs50081885
MGI SNP Detail
Chr7:30906594 Cpgi18840 1026 bp proximal
SNP A/G G G G G G G A G G G G G G G G
rs250795666
MGI SNP Detail
Chr7:30906610 Cpgi18840 1010 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs47508662
MGI SNP Detail
Chr7:30906714 Cpgi18840 906 bp proximal
SNP C/T C C C C C C T C C C C C C C C
rs243142325
MGI SNP Detail
Chr7:30906738 Cpgi18840 882 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs262932997
MGI SNP Detail
Chr7:30906743 Cpgi18840 877 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs225087398
MGI SNP Detail
Chr7:30906749 Cpgi18840 871 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246164137
MGI SNP Detail
Chr7:30906755 Cpgi18840 865 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs46335857
MGI SNP Detail
Chr7:30906872 Cpgi18840 748 bp proximal
SNP A/G G G G G G G A G G G G G G G G
rs225915795
MGI SNP Detail
Chr7:30906934 Cpgi18840 686 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs235770662
MGI SNP Detail
Chr7:30906944 Cpgi18840 676 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs254579219
MGI SNP Detail
Chr7:30906959 Cpgi18840 661 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs228352765
MGI SNP Detail
Chr7:30906979 Cpgi18840 641 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs579067264
MGI SNP Detail
Chr7:30907010 Cpgi18840 610 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs46107355
MGI SNP Detail
Chr7:30907060 Cpgi18840 560 bp proximal
SNP A/G A A A G A A A A A
rs254722821
MGI SNP Detail
Chr7:30907233 Cpgi18840 387 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs215760913
MGI SNP Detail
Chr7:30907238 Cpgi18840 382 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs581294806
MGI SNP Detail
Chr7:30907291 Cpgi18840 329 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs232086763
MGI SNP Detail
Chr7:30907373 Cpgi18840 247 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs254910766
MGI SNP Detail
Chr7:30907462 Cpgi18840 158 bp proximal
Rr645057 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs214519152
MGI SNP Detail
Chr7:30907465 Cpgi18840 155 bp proximal
Rr645057 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs230099302
MGI SNP Detail
Chr7:30907484 Cpgi18840 136 bp proximal
Rr645057 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G G
rs250694728
MGI SNP Detail
Chr7:30907641 Cpgi18840 within coordinates of
Rr645057 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs216958302
MGI SNP Detail
Chr7:30907724 Cpgi18840 within coordinates of
Rr645057 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs236757051
MGI SNP Detail
Chr7:30907751 Cpgi18840 within coordinates of
Gm73020 within coordinates of
Rr645057 within coordinates of
Tssr65856 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs259052035
MGI SNP Detail
Chr7:30907770 Cpgi18840 within coordinates of
Gm73020 within coordinates of
Rr645057 within coordinates of
Tssr65856 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs225243948
MGI SNP Detail
Chr7:30907782 Cpgi18840 within coordinates of
Gm37292 within coordinates of
Gm73020 within coordinates of
Rr645058 within coordinates of
Tssr65856 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs50922058
MGI SNP Detail
Chr7:30907898 Cpgi18840 within coordinates of
Gm37292 within coordinates of
Gm73020 within coordinates of
Rr645058 within coordinates of
SNP C/T T T T T T C C C C C T C C C C T
rs48157372
MGI SNP Detail
Chr7:30907919 Cpgi18840 within coordinates of
Gm37292 within coordinates of
Gm73020 within coordinates of
Rr645058 within coordinates of
SNP C/T T T T T T T C T T T T T T T T
rs31779456
MGI SNP Detail
Chr7:30907946 Cpgi18840 within coordinates of
Gm37292 within coordinates of
Gm73020 within coordinates of
Rr645058 within coordinates of
Rr645059 within coordinates of
SNP C/T C C C T C C C
rs51718382
MGI SNP Detail
Chr7:30907999 Cpgi18840 within coordinates of
Gm37292 within coordinates of
Gm73020 within coordinates of
Rr645058 within coordinates of
SNP A/G G G G G G G A G G G G G G G G
rs254501545
MGI SNP Detail
Chr7:30908125 Cpgi18840 123 bp distal
Gm37292 within coordinates of
Gm73020 within coordinates of
Rr645058 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584412462
MGI SNP Detail
Chr7:30908136 Cpgi18840 134 bp distal
Gm37292 within coordinates of
Gm73020 within coordinates of
Rr645058 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs46581775
MGI SNP Detail
Chr7:30908281 Cpgi18840 279 bp distal
Gm37292 within coordinates of
Gm73020 within coordinates of
Rr645058 within coordinates of
SNP C/T C C C C C C T C C C C C C C C
rs251187412
MGI SNP Detail
Chr7:30908297 Cpgi18840 295 bp distal
Gm37292 within coordinates of
Gm73020 within coordinates of
Rr645058 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs578695254
MGI SNP Detail
Chr7:30908479 Cpgi18840 477 bp distal
Gm37292 within coordinates of
Gm73020 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs48893219
MGI SNP Detail
Chr7:30908624 Cpgi18840 622 bp distal
Gm73020 within coordinates of
SNP C/T T T T T T T C T T T T T T T T
rs232666223
MGI SNP Detail
Chr7:30908675 Cpgi18840 673 bp distal
Gm73020 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs250391446
MGI SNP Detail
Chr7:30908730 Cpgi18840 728 bp distal
Gm73020 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs258051635
MGI SNP Detail
Chr7:30908755 Cpgi18840 753 bp distal
Gm73020 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs223996479
MGI SNP Detail
Chr7:30908763 Cpgi18840 761 bp distal
Gm73020 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs244101061
MGI SNP Detail
Chr7:30908818 Cpgi18840 816 bp distal
Gm73020 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs49877785
MGI SNP Detail
Chr7:30908882 Cpgi18840 880 bp distal
Gm73020 within coordinates of
SNP A/C C C C C C C A C C C C C C C C
rs236674982
MGI SNP Detail
Chr7:30908974 Cpgi18840 972 bp distal
Gm73020 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs49482769
MGI SNP Detail
Chr7:30908992 Cpgi18840 990 bp distal
Gm73020 within coordinates of
SNP C/T C C C C C C T C C C C C C C C
rs217342133
MGI SNP Detail
Chr7:30909039 Cpgi18840 1037 bp distal
Gm73020 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs584461713
MGI SNP Detail
Chr7:30909323 Cpgi18840 1321 bp distal
Gm73020 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C G G C C C C C C C C C C C C C C
rs31691800
MGI SNP Detail
Chr7:30909349 Cpgi18840 1347 bp distal
Gm73020 within coordinates of
SNP C/T T T T C T C
rs238133170
MGI SNP Detail
Chr7:30909490 Cpgi18840 1488 bp distal
Gm73020 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs48347376
MGI SNP Detail
Chr7:30909505 Cpgi18840 1503 bp distal
Gm73020 within coordinates of
SNP C/T T T T T T T C T T T T T T T T
rs49572956
MGI SNP Detail
Chr7:30909537 Cpgi18840 1535 bp distal
Gm73020 within coordinates of
SNP C/G C C C C C C G C C G G C C C C C C C
rs230871316
MGI SNP Detail
Chr7:30909828 Cpgi18840 1826 bp distal
Gm73020 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs252751713
MGI SNP Detail
Chr7:30909935 Cpgi18840 1933 bp distal
Gm73020 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs221849889
MGI SNP Detail
Chr7:30909965 Cpgi18840 1963 bp distal
Gm73020 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs248217586
MGI SNP Detail
Chr7:30909966 Cpgi18840 1964 bp distal
Gm73020 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs265488949
MGI SNP Detail
Chr7:30909967 Cpgi18840 1965 bp distal
Gm73020 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
<< first < prev1 next > last >>
Showing SNP(s) 1 - 74 of 74

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory