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Mouse SNP Summary
Symbol
Name
ID 		Cpgi19768
CpG island 19768
MGI:5684842

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Showing SNP(s) 1 - 56 of 56

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33172476
MGI SNP Detail		 Chr7:127396239 Cpgi19768 1983 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/T C C C C C C C C C C T C C C C
rs216560432
MGI SNP Detail		 Chr7:127396382 Cpgi19768 1840 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33172478
MGI SNP Detail		 Chr7:127396468 Cpgi19768 1754 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/T C C C C C C C C C C T C C T C
rs244226315
MGI SNP Detail		 Chr7:127396655 Cpgi19768 1567 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs213218265
MGI SNP Detail		 Chr7:127396673 Cpgi19768 1549 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230074602
MGI SNP Detail		 Chr7:127396689 Cpgi19768 1533 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs264238783
MGI SNP Detail		 Chr7:127396949 Cpgi19768 1273 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225976695
MGI SNP Detail		 Chr7:127396996 Cpgi19768 1226 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs241341548
MGI SNP Detail		 Chr7:127397017 Cpgi19768 1205 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs258797793
MGI SNP Detail		 Chr7:127397116 Cpgi19768 1106 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs220202919
MGI SNP Detail		 Chr7:127397194 Cpgi19768 1028 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs238725493
MGI SNP Detail		 Chr7:127397293 Cpgi19768 929 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250415707
MGI SNP Detail		 Chr7:127397434 Cpgi19768 788 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs32294551
MGI SNP Detail		 Chr7:127397587 Cpgi19768 635 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/G A A G A A A A A G A A A G A A G A
rs248060164
MGI SNP Detail		 Chr7:127397607 Cpgi19768 615 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs265845783
MGI SNP Detail		 Chr7:127397612 Cpgi19768 610 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs232072536
MGI SNP Detail		 Chr7:127397637 Cpgi19768 585 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247578343
MGI SNP Detail		 Chr7:127397656 Cpgi19768 566 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs33172483
MGI SNP Detail		 Chr7:127397669 Cpgi19768 553 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/G G G G G G G G G G G A G G A G
rs581264579
MGI SNP Detail		 Chr7:127397680 Cpgi19768 542 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226365593
MGI SNP Detail		 Chr7:127397708 Cpgi19768 514 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244049331
MGI SNP Detail		 Chr7:127397717 Cpgi19768 505 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213278586
MGI SNP Detail		 Chr7:127397738 Cpgi19768 484 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs228698311
MGI SNP Detail		 Chr7:127397752 Cpgi19768 470 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs33173446
MGI SNP Detail		 Chr7:127397964 Cpgi19768 258 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/T T T T T T T T T T T C T T C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218239789
MGI SNP Detail		 Chr7:127397984 Cpgi19768 238 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33173449
MGI SNP Detail		 Chr7:127397999 Cpgi19768 223 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/C C C C C C C C C C C A C C A C
rs263022257
MGI SNP Detail		 Chr7:127398028 Cpgi19768 194 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214520083
MGI SNP Detail		 Chr7:127398049 Cpgi19768 173 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231579076
MGI SNP Detail		 Chr7:127398125 Cpgi19768 97 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250276268
MGI SNP Detail		 Chr7:127398150 Cpgi19768 72 bp proximal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218020413
MGI SNP Detail		 Chr7:127398271 Cpgi19768 within coordinates of
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs251317248
MGI SNP Detail		 Chr7:127398420 Cpgi19768 within coordinates of
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G A G G G G G G A G G G G
rs263133079
MGI SNP Detail		 Chr7:127398467 Cpgi19768 14 bp distal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/C C A
rs224846042
MGI SNP Detail		 Chr7:127398519 Cpgi19768 66 bp distal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244699019
MGI SNP Detail		 Chr7:127398815 Cpgi19768 362 bp distal
Gm49388 within coordinates of
Setd1a within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs31393251
MGI SNP Detail		 Chr7:127399368 9430064I24Rik within coordinates of
Cpgi19768 915 bp distal
Gm49388 within coordinates of
Rr655897 within coordinates of
 SNP A/G A G G A G
rs224998811
MGI SNP Detail		 Chr7:127399369 9430064I24Rik within coordinates of
Cpgi19768 916 bp distal
Gm49388 within coordinates of
Rr655897 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237883160
MGI SNP Detail		 Chr7:127399386 9430064I24Rik within coordinates of
Cpgi19768 933 bp distal
Gm49388 within coordinates of
Rr655897 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254898300
MGI SNP Detail		 Chr7:127399395 9430064I24Rik within coordinates of
Cpgi19768 942 bp distal
Gm49388 within coordinates of
Rr655897 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs227994695
MGI SNP Detail		 Chr7:127399442 9430064I24Rik within coordinates of
Cpgi19768 989 bp distal
Gm49388 within coordinates of
Rr655897 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33173451
MGI SNP Detail		 Chr7:127399489 9430064I24Rik within coordinates of
Cpgi19768 1036 bp distal
Gm49388 within coordinates of
Rr655897 within coordinates of
 SNP A/G G G G G G G G G G G A G G A G
rs46997773
MGI SNP Detail		 Chr7:127399586 9430064I24Rik within coordinates of
Cpgi19768 1133 bp distal
Gm49388 within coordinates of
Rr655897 within coordinates of
 SNP C/G C G
rs233201329
MGI SNP Detail		 Chr7:127399605 9430064I24Rik within coordinates of
Cpgi19768 1152 bp distal
Gm49388 within coordinates of
Rr655897 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246515028
MGI SNP Detail		 Chr7:127399644 9430064I24Rik within coordinates of
Cpgi19768 1191 bp distal
Gm49388 within coordinates of
Rr655897 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31050974
MGI SNP Detail		 Chr7:127399680 9430064I24Rik within coordinates of
Cpgi19768 1227 bp distal
Gm49388 within coordinates of
Rr655897 within coordinates of
Rr655898 within coordinates of
 SNP A/C C A C C
rs33174294
MGI SNP Detail		 Chr7:127399867 9430064I24Rik within coordinates of
Cpgi19768 1414 bp distal
Gm49388 within coordinates of
Hsd3b7 within coordinates of
Rr655897 within coordinates of
Tssr69293 within coordinates of
 SNP C/T C C C C C C C C C C C C C T C
rs250600278
MGI SNP Detail		 Chr7:127399934 9430064I24Rik within coordinates of
Cpgi19768 1481 bp distal
Gm49388 within coordinates of
Hsd3b7 within coordinates of
Rr655897 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51044100
MGI SNP Detail		 Chr7:127400017 9430064I24Rik within coordinates of
Cpgi19768 1564 bp distal
Gm49388 within coordinates of
Hsd3b7 within coordinates of
Rr655897 within coordinates of
Tssr69295 within coordinates of
 SNP C/T C T C
rs240181715
MGI SNP Detail		 Chr7:127400106 9430064I24Rik within coordinates of
Cpgi19768 1653 bp distal
Gm49388 within coordinates of
Hsd3b7 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31058998
MGI SNP Detail		 Chr7:127400131 9430064I24Rik within coordinates of
Cpgi19768 1678 bp distal
Gm49388 within coordinates of
Hsd3b7 within coordinates of
 SNP C/T T C T T
rs224911133
MGI SNP Detail		 Chr7:127400148 9430064I24Rik within coordinates of
Cpgi19768 1695 bp distal
Gm49388 within coordinates of
Hsd3b7 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs13465497
MGI SNP Detail		 Chr7:127400306 9430064I24Rik within coordinates of
Cpgi19768 1853 bp distal
Gm49388 within coordinates of
Hsd3b7 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C T C C C C
rs250146575
MGI SNP Detail		 Chr7:127400312 9430064I24Rik within coordinates of
Cpgi19768 1859 bp distal
Gm49388 within coordinates of
Hsd3b7 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C T C C C C C C C C C C C
rs219080821
MGI SNP Detail		 Chr7:127400321 9430064I24Rik within coordinates of
Cpgi19768 1868 bp distal
Gm49388 within coordinates of
Hsd3b7 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236499822
MGI SNP Detail		 Chr7:127400423 9430064I24Rik within coordinates of
Cpgi19768 1970 bp distal
Gm49388 within coordinates of
Hsd3b7 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 56 of 56
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory