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Mouse SNP Summary
Symbol
Name
ID 		Cpgi20473
CpG island 20473
MGI:5685547

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Showing SNP(s) 1 - 69 of 69

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33510227
MGI SNP Detail		 Chr8:71048288 Cpgi20473 1909 bp proximal
Isyna1 within coordinates of
Rr186759 within coordinates of
 SNP C/T T C T T T
rs222402408
MGI SNP Detail		 Chr8:71048399 Cpgi20473 1798 bp proximal
Isyna1 within coordinates of
Rr186759 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236179750
MGI SNP Detail		 Chr8:71048414 Cpgi20473 1783 bp proximal
Isyna1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs13463225
MGI SNP Detail		 Chr8:71048480 Cpgi20473 1717 bp proximal
Isyna1 within coordinates of
 SNP A/T T A T T T
rs32670801
MGI SNP Detail		 Chr8:71048823 Cpgi20473 1374 bp proximal
Isyna1 within coordinates of
Rr177468 within coordinates of
 SNP C/T T T C C T T T
rs243082152
MGI SNP Detail		 Chr8:71049049 Cpgi20473 1148 bp proximal
Isyna1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265291282
MGI SNP Detail		 Chr8:71049056 Cpgi20473 1141 bp proximal
Isyna1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220080901
MGI SNP Detail		 Chr8:71049065 Cpgi20473 1132 bp proximal
Isyna1 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs33155859
MGI SNP Detail		 Chr8:71049122 Cpgi20473 1075 bp proximal
Isyna1 within coordinates of
 SNP A/G G G A A G G G
rs583930171
MGI SNP Detail		 Chr8:71049271 Cpgi20473 926 bp proximal
Isyna1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258185791
MGI SNP Detail		 Chr8:71049335 Cpgi20473 862 bp proximal
Isyna1 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs228624323
MGI SNP Detail		 Chr8:71049336 Cpgi20473 861 bp proximal
Isyna1 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs32620675
MGI SNP Detail		 Chr8:71049346 Cpgi20473 851 bp proximal
Isyna1 within coordinates of
 SNP C/T C C T T C C
rs261667446
MGI SNP Detail		 Chr8:71049388 Cpgi20473 809 bp proximal
Isyna1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs229625415
MGI SNP Detail		 Chr8:71049463 Cpgi20473 734 bp proximal
Isyna1 within coordinates of
Rr177469 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs251068667
MGI SNP Detail		 Chr8:71049464 Cpgi20473 733 bp proximal
Isyna1 within coordinates of
Rr177469 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs215584263
MGI SNP Detail		 Chr8:71049469 Cpgi20473 728 bp proximal
Isyna1 within coordinates of
Rr177469 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227739557
MGI SNP Detail		 Chr8:71049481 Cpgi20473 716 bp proximal
Isyna1 within coordinates of
Rr177469 within coordinates of
Tssr77776 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246928203
MGI SNP Detail		 Chr8:71049487 Cpgi20473 710 bp proximal
Isyna1 within coordinates of
Rr177469 within coordinates of
Tssr77776 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs32599033
MGI SNP Detail		 Chr8:71049514 Cpgi20473 683 bp proximal
Isyna1 within coordinates of
Rr177469 within coordinates of
 SNP A/G G G A A G G
rs236141336
MGI SNP Detail		 Chr8:71049556 Cpgi20473 641 bp proximal
Isyna1 within coordinates of
Rr177469 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs260726109
MGI SNP Detail		 Chr8:71049583 Cpgi20473 614 bp proximal
Isyna1 within coordinates of
Rr177469 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212696742
MGI SNP Detail		 Chr8:71049614 Cpgi20473 583 bp proximal
Isyna1 within coordinates of
Rr177469 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237953195
MGI SNP Detail		 Chr8:71049709 Cpgi20473 488 bp proximal
Isyna1 within coordinates of
Rr177469 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257748828
MGI SNP Detail		 Chr8:71049761 Cpgi20473 436 bp proximal
Isyna1 within coordinates of
Rr177469 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220690844
MGI SNP Detail		 Chr8:71049768 Cpgi20473 429 bp proximal
Isyna1 within coordinates of
Rr177469 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240022471
MGI SNP Detail		 Chr8:71049814 Cpgi20473 383 bp proximal
Isyna1 within coordinates of
Rr186760 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251979145
MGI SNP Detail		 Chr8:71049944 Cpgi20473 253 bp proximal
Rr186760 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs222038248
MGI SNP Detail		 Chr8:71049945 Cpgi20473 252 bp proximal
Rr186760 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs248516395
MGI SNP Detail		 Chr8:71049990 Cpgi20473 207 bp proximal
Rr186760 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A G A
rs264708410
MGI SNP Detail		 Chr8:71050029 Cpgi20473 168 bp proximal
Rr186760 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs229026822
MGI SNP Detail		 Chr8:71050048 Cpgi20473 149 bp proximal
Rr186760 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs246228630
MGI SNP Detail		 Chr8:71050131 Cpgi20473 66 bp proximal
Rr186760 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33258625
MGI SNP Detail		 Chr8:71050184 Cpgi20473 13 bp proximal
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP C/T T C T T T
rs32595717
MGI SNP Detail		 Chr8:71050191 Cpgi20473 6 bp proximal
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP C/T C T C C C
rs48185174
MGI SNP Detail		 Chr8:71050202 Cpgi20473 within coordinates of
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP C C C
rs33593630
MGI SNP Detail		 Chr8:71050273 Cpgi20473 within coordinates of
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP C/T C T C C C
rs32741044
MGI SNP Detail		 Chr8:71050511 Cpgi20473 within coordinates of
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP A/G A G A A A
rs248947162
MGI SNP Detail		 Chr8:71050518 Cpgi20473 within coordinates of
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs212932284
MGI SNP Detail		 Chr8:71050522 Cpgi20473 within coordinates of
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs235963994
MGI SNP Detail		 Chr8:71050980 Cpgi20473 within coordinates of
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33073939
MGI SNP Detail		 Chr8:71051325 Cpgi20473 within coordinates of
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP A/G G G A A G A G
rs13463815
MGI SNP Detail		 Chr8:71051373 Cpgi20473 within coordinates of
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP G/T T T G G T T T
rs32657694
MGI SNP Detail		 Chr8:71051490 Cpgi20473 within coordinates of
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP A/G G G A A G G G
rs222003278
MGI SNP Detail		 Chr8:71051564 Cpgi20473 within coordinates of
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T
rs578941183
MGI SNP Detail		 Chr8:71051603 Cpgi20473 within coordinates of
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs578463063
MGI SNP Detail		 Chr8:71051855 Cpgi20473 within coordinates of
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs251358547
MGI SNP Detail		 Chr8:71052007 Cpgi20473 147 bp distal
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255569934
MGI SNP Detail		 Chr8:71052127 Cpgi20473 267 bp distal
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs221267976
MGI SNP Detail		 Chr8:71052152 Cpgi20473 292 bp distal
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP A/C A C A A C A A A A A A C A A C C A A A C A C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243367421
MGI SNP Detail		 Chr8:71052227 Cpgi20473 367 bp distal
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs258584616
MGI SNP Detail		 Chr8:71052345 Cpgi20473 485 bp distal
Rr186760 within coordinates of
Ssbp4 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs32752001
MGI SNP Detail		 Chr8:71052485 Cpgi20473 625 bp distal
Ssbp4 within coordinates of
 SNP A/C C C A C C C
rs241599113
MGI SNP Detail		 Chr8:71052535 Cpgi20473 675 bp distal
Ssbp4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs260964620
MGI SNP Detail		 Chr8:71052580 Cpgi20473 720 bp distal
Ssbp4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33320372
MGI SNP Detail		 Chr8:71052748 Cpgi20473 888 bp distal
Ssbp4 within coordinates of
 SNP A/G A G G A A
rs251942981
MGI SNP Detail		 Chr8:71052812 Cpgi20473 952 bp distal
Ssbp4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261788224
MGI SNP Detail		 Chr8:71052885 Cpgi20473 1025 bp distal
Ssbp4 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs229896422
MGI SNP Detail		 Chr8:71053070 Cpgi20473 1210 bp distal
Rr186761 within coordinates of
Ssbp4 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244397741
MGI SNP Detail		 Chr8:71053078 Cpgi20473 1218 bp distal
Rr186761 within coordinates of
Ssbp4 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32808375
MGI SNP Detail		 Chr8:71053082 Cpgi20473 1222 bp distal
Rr186761 within coordinates of
Ssbp4 within coordinates of
 SNP G/T G T T G G
rs233500720
MGI SNP Detail		 Chr8:71053288 Cpgi20473 1428 bp distal
Rr186761 within coordinates of
Ssbp4 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs246594593
MGI SNP Detail		 Chr8:71053459 Cpgi20473 1599 bp distal
Rr186761 within coordinates of
Ssbp4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217272255
MGI SNP Detail		 Chr8:71053576 Cpgi20473 1716 bp distal
Rr186761 within coordinates of
Ssbp4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs234673381
MGI SNP Detail		 Chr8:71053635 Cpgi20473 1775 bp distal
Rr186761 within coordinates of
Ssbp4 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs260927286
MGI SNP Detail		 Chr8:71053732 Cpgi20473 1872 bp distal
Rr186761 within coordinates of
Ssbp4 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs49849533
MGI SNP Detail		 Chr8:71053813 Cpgi20473 1953 bp distal
Rr186761 within coordinates of
Ssbp4 within coordinates of
 SNP T T T
rs585836669
MGI SNP Detail		 Chr8:71053833 Cpgi20473 1973 bp distal
Rr186761 within coordinates of
Ssbp4 within coordinates of
 SNP A/G G G A G A G G A G G G A A A A G A G G A G G G G A G G G G G A A A G G G G A G G G G G G A G G G G
rs238274301
MGI SNP Detail		 Chr8:71053834 Cpgi20473 1974 bp distal
Rr186761 within coordinates of
Ssbp4 within coordinates of
 SNP A/G G G A G A G G A G G G A A A A A G A G G A G G G G A G G G G G A A A G G G G A G G G G G G A G G G
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Showing SNP(s) 1 - 69 of 69
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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