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Mouse SNP Summary
Symbol
Name
ID 		Cpgi20652
CpG island 20652
MGI:5685726

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Showing SNP(s) 1 - 58 of 58

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257514213
MGI SNP Detail		 Chr8:84422491 Cpgi20652 1984 bp proximal
Pkn1 within coordinates of
 SNP A/T A T
rs249153691
MGI SNP Detail		 Chr8:84422499 Cpgi20652 1976 bp proximal
Pkn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs215508759
MGI SNP Detail		 Chr8:84422504 Cpgi20652 1971 bp proximal
Pkn1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235197470
MGI SNP Detail		 Chr8:84422514 Cpgi20652 1961 bp proximal
Pkn1 within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs46224897
MGI SNP Detail		 Chr8:84422553 Cpgi20652 1922 bp proximal
Pkn1 within coordinates of
 SNP A A
rs583448125
MGI SNP Detail		 Chr8:84422738 Cpgi20652 1737 bp proximal
Pkn1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585785023
MGI SNP Detail		 Chr8:84423012 Cpgi20652 1463 bp proximal
Pkn1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236759765
MGI SNP Detail		 Chr8:84423088 Cpgi20652 1387 bp proximal
Pkn1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260745817
MGI SNP Detail		 Chr8:84423138 Cpgi20652 1337 bp proximal
Pkn1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221301763
MGI SNP Detail		 Chr8:84423173 Cpgi20652 1302 bp proximal
Pkn1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T C C T T T T T C C T T T C T T T T T
rs32935194
MGI SNP Detail		 Chr8:84423185 Cpgi20652 1290 bp proximal
Pkn1 within coordinates of
 SNP C/T T T C T T C
rs253095330
MGI SNP Detail		 Chr8:84423192 Cpgi20652 1283 bp proximal
Pkn1 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs32711488
MGI SNP Detail		 Chr8:84423252 Cpgi20652 1223 bp proximal
Pkn1 within coordinates of
 SNP G/T T T G T T G
rs37637619
MGI SNP Detail		 Chr8:84423402 Cpgi20652 1073 bp proximal
Pkn1 within coordinates of
 SNP A/G A A A A A A A A G A A G A G G
rs262401399
MGI SNP Detail		 Chr8:84423409 Cpgi20652 1066 bp proximal
Pkn1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs579776009
MGI SNP Detail		 Chr8:84423487 Cpgi20652 988 bp proximal
Pkn1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs583040099
MGI SNP Detail		 Chr8:84423669 Cpgi20652 806 bp proximal
Pkn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231316953
MGI SNP Detail		 Chr8:84423697 Cpgi20652 778 bp proximal
Pkn1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33036864
MGI SNP Detail		 Chr8:84423716 Cpgi20652 759 bp proximal
Pkn1 within coordinates of
 SNP A/G A A G A A G
rs587196180
MGI SNP Detail		 Chr8:84423730 Cpgi20652 745 bp proximal
Pkn1 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs33403773
MGI SNP Detail		 Chr8:84423878 Cpgi20652 597 bp proximal
Pkn1 within coordinates of
 SNP A/G A A G A A G
rs228677912
MGI SNP Detail		 Chr8:84423892 Cpgi20652 583 bp proximal
Pkn1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs249037058
MGI SNP Detail		 Chr8:84423936 Cpgi20652 539 bp proximal
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215451271
MGI SNP Detail		 Chr8:84423972 Cpgi20652 503 bp proximal
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33546595
MGI SNP Detail		 Chr8:84423990 Cpgi20652 485 bp proximal
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP C/T T T C T T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32795095
MGI SNP Detail		 Chr8:84423992 Cpgi20652 483 bp proximal
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP C/T T T C T T C
rs32671042
MGI SNP Detail		 Chr8:84424092 Cpgi20652 383 bp proximal
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP G/T T T T G T T G
rs52055490
MGI SNP Detail		 Chr8:84424470 Cpgi20652 5 bp proximal
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP A/C A A A C
rs51666121
MGI SNP Detail		 Chr8:84424476 Cpgi20652 within coordinates of
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP A/G A A A G
rs33540995
MGI SNP Detail		 Chr8:84424569 Cpgi20652 within coordinates of
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP C/G G G C G G C
rs32706456
MGI SNP Detail		 Chr8:84424607 Cpgi20652 within coordinates of
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP A/G A A G A A G
rs36926411
MGI SNP Detail		 Chr8:84424790 Cpgi20652 98 bp distal
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP A/G G G G G G G G G G G G G G A G
rs220678250
MGI SNP Detail		 Chr8:84424846 Cpgi20652 154 bp distal
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239998144
MGI SNP Detail		 Chr8:84425225 Cpgi20652 533 bp distal
Cpgi20653 within coordinates of
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G G G G G G A G
rs262019502
MGI SNP Detail		 Chr8:84425295 Cpgi20652 603 bp distal
Cpgi20653 within coordinates of
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs223485999
MGI SNP Detail		 Chr8:84425334 Cpgi20652 642 bp distal
Cpgi20653 within coordinates of
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP A/G A A A A A G A A A G A G G G G G G G A A A G A A G A G A A A A A G A A G G A A G A A A A A A G G A A A A
rs244071523
MGI SNP Detail		 Chr8:84425381 Cpgi20652 689 bp distal
Cpgi20653 within coordinates of
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261993511
MGI SNP Detail		 Chr8:84425385 Cpgi20652 693 bp distal
Cpgi20653 within coordinates of
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222805868
MGI SNP Detail		 Chr8:84425560 Cpgi20652 868 bp distal
Cpgi20653 within coordinates of
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs242946710
MGI SNP Detail		 Chr8:84425650 Cpgi20652 958 bp distal
Cpgi20653 within coordinates of
Pkn1 within coordinates of
Rr666289 within coordinates of
 SNP A/G G G G G A G G G A G A A A G G G G A G G A G G G G G G G G G A G G G G G G G G G A G G G G G
rs52356167
MGI SNP Detail		 Chr8:84425748 Cpgi20652 1056 bp distal
Cpgi20653 within coordinates of
Pkn1 within coordinates of
Rr666289 within coordinates of
Tssr82047 within coordinates of
 SNP A/G A G A G A A A G G G G G G G G G G G G G A G G G G A G G G G G G G G G
rs228281716
MGI SNP Detail		 Chr8:84425791 Cpgi20652 1099 bp distal
Cpgi20653 within coordinates of
Pkn1 within coordinates of
Rr666289 within coordinates of
Tssr82047 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G C C G G G G C C G G G C G G G G G
rs251056436
MGI SNP Detail		 Chr8:84425817 Cpgi20652 1125 bp distal
Cpgi20653 within coordinates of
Rr666290 within coordinates of
Tssr82047 within coordinates of
 SNP C/G C G C C C C C C G C C C C C C C G G C G C C C C G C C C C C C C C C C C C C C C C C C
rs52105673
MGI SNP Detail		 Chr8:84425923 Cpgi20652 1231 bp distal
Cpgi20653 within coordinates of
Rr666290 within coordinates of
 SNP C/T T T T T T C T T T C T C C C C C C C C T T C T T C T C T T T T C T T C C T T C T T T T T T C C T T T T
rs228177941
MGI SNP Detail		 Chr8:84425962 Cpgi20652 1270 bp distal
Cpgi20653 within coordinates of
Rr666290 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs251942971
MGI SNP Detail		 Chr8:84425997 Cpgi20652 1305 bp distal
Cpgi20653 within coordinates of
Rr666290 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32751515
MGI SNP Detail		 Chr8:84426036 Cpgi20652 1344 bp distal
Cpgi20653 within coordinates of
Rr666290 within coordinates of
 SNP C/T C C T C C T
rs234074996
MGI SNP Detail		 Chr8:84426038 Cpgi20652 1346 bp distal
Cpgi20653 within coordinates of
Rr666290 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs247266772
MGI SNP Detail		 Chr8:84426064 Cpgi20652 1372 bp distal
Cpgi20653 within coordinates of
Rr666290 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32974145
MGI SNP Detail		 Chr8:84426138 Cpgi20652 1446 bp distal
Rr666290 within coordinates of
 SNP A/G A A G A A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233494779
MGI SNP Detail		 Chr8:84426154 Cpgi20652 1462 bp distal
Rr666290 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs256978199
MGI SNP Detail		 Chr8:84426240 Cpgi20652 1548 bp distal
Rr401009 within coordinates of
Rr666290 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223077820
MGI SNP Detail		 Chr8:84426257 Cpgi20652 1565 bp distal
Rr401009 within coordinates of
Rr666290 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs234653112
MGI SNP Detail		 Chr8:84426512 Cpgi20652 1820 bp distal
Rr401009 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583641210
MGI SNP Detail		 Chr8:84426540 Cpgi20652 1848 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49922776
MGI SNP Detail		 Chr8:84426553 Cpgi20652 1861 bp distal
 SNP T T T
rs46750248
MGI SNP Detail		 Chr8:84426554 Cpgi20652 1862 bp distal
 SNP G G G
rs32995574
MGI SNP Detail		 Chr8:84426679 Cpgi20652 1987 bp distal
 SNP A/G G G G A G
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Showing SNP(s) 1 - 58 of 58
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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