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Mouse SNP Summary
Symbol
Name
ID 		Tssr2563
transcription start site region 2563
MGI:5930330

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238564808
MGI SNP Detail		 Chr8:47740714 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 1961 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs255640132
MGI SNP Detail		 Chr8:47740880 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 1795 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224462163
MGI SNP Detail		 Chr8:47741087 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 1588 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs242414408
MGI SNP Detail		 Chr8:47741116 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 1559 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs219556296
MGI SNP Detail		 Chr8:47741358 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 1317 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs233480588
MGI SNP Detail		 Chr8:47741560 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 1115 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs258567546
MGI SNP Detail		 Chr8:47741576 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 1099 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs216062400
MGI SNP Detail		 Chr8:47741584 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 1091 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232475363
MGI SNP Detail		 Chr8:47741697 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 978 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T T T T T T T A T T T T T T T T T T T T
rs251005217
MGI SNP Detail		 Chr8:47741832 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 843 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs212694224
MGI SNP Detail		 Chr8:47741908 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 767 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs582018653
MGI SNP Detail		 Chr8:47742106 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 569 bp downstream
 SNP A/G G A A A A A A A A A A A A A G G G G A A G A A A G G A A A A A A G A A A G A A A A A A A G A A G
rs586243817
MGI SNP Detail		 Chr8:47742118 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 557 bp downstream
 SNP A/G A G G G G G G G G G G G G G A A A G G G G G G A G G G G G G G A G G G G G G G G G G G G A
rs229644662
MGI SNP Detail		 Chr8:47742153 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 522 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260645652
MGI SNP Detail		 Chr8:47742234 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 441 bp downstream
 SNP C/T T C C C C C C C C C C C C C T T T C C C C C C C T C C C C C C C C T C C C C C C C C C C C C C C T T
rs226129111
MGI SNP Detail		 Chr8:47742280 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 395 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246394460
MGI SNP Detail		 Chr8:47742308 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 367 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs262806856
MGI SNP Detail		 Chr8:47742351 Cpgi20326 within coordinates of
Stox2 within coordinates of
Tssr2563 324 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs51094148
MGI SNP Detail		 Chr8:47742436 Cpgi20326 within coordinates of
Rr663193 within coordinates of
Stox2 within coordinates of
Tssr2563 239 bp downstream
Tssr81228 within coordinates of
 SNP C/T T C C
rs237478766
MGI SNP Detail		 Chr8:47742476 Cpgi20326 within coordinates of
Rr663193 within coordinates of
Stox2 within coordinates of
Tssr2563 199 bp downstream
Tssr81229 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs33384525
MGI SNP Detail		 Chr8:47742570 Cpgi20326 within coordinates of
Rr663193 within coordinates of
Stox2 within coordinates of
Tssr2563 105 bp downstream
 SNP C/T C C C T T
rs580520274
MGI SNP Detail		 Chr8:47742691 Cpgi20326 within coordinates of
Rr663193 within coordinates of
Stox2 within coordinates of
Tssr2563 8 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs584172069
MGI SNP Detail		 Chr8:47742704 Cpgi20326 within coordinates of
Rr663193 within coordinates of
Stox2 within coordinates of
Tssr2563 21 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs255570613
MGI SNP Detail		 Chr8:47742854 Cpgi20326 within coordinates of
Rr663193 within coordinates of
Stox2 within coordinates of
Tssr2563 171 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224626461
MGI SNP Detail		 Chr8:47742867 Rr663193 within coordinates of
Stox2 within coordinates of
Tssr2563 184 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs47670227
MGI SNP Detail		 Chr8:47742938 Stox2 within coordinates of
Tssr2563 255 bp upstream
 SNP G G
rs235910910
MGI SNP Detail		 Chr8:47742940 Stox2 within coordinates of
Tssr2563 257 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs264473298
MGI SNP Detail		 Chr8:47743121 Stox2 within coordinates of
Tssr2563 438 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs234430543
MGI SNP Detail		 Chr8:47743181 Stox2 within coordinates of
Tssr2563 498 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253530710
MGI SNP Detail		 Chr8:47743257 Stox2 within coordinates of
Tssr2563 574 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs216705146
MGI SNP Detail		 Chr8:47743292 Stox2 within coordinates of
Tssr2563 609 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs226823435
MGI SNP Detail		 Chr8:47743304 Stox2 within coordinates of
Tssr2563 621 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs245285803
MGI SNP Detail		 Chr8:47743338 Stox2 within coordinates of
Tssr2563 655 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212609412
MGI SNP Detail		 Chr8:47743386 Stox2 within coordinates of
Tssr2563 703 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229759582
MGI SNP Detail		 Chr8:47743452 Stox2 within coordinates of
Tssr2563 769 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264006091
MGI SNP Detail		 Chr8:47743456 Stox2 within coordinates of
Tssr2563 773 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217551669
MGI SNP Detail		 Chr8:47743462 Stox2 within coordinates of
Tssr2563 779 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G
rs240633186
MGI SNP Detail		 Chr8:47743570 Stox2 within coordinates of
Tssr2563 887 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258617104
MGI SNP Detail		 Chr8:47743598 Stox2 within coordinates of
Tssr2563 915 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220035249
MGI SNP Detail		 Chr8:47743602 Stox2 within coordinates of
Tssr2563 919 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C A C C C C C C C A C C C C
rs231297260
MGI SNP Detail		 Chr8:47743613 Stox2 within coordinates of
Tssr2563 930 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs248813516
MGI SNP Detail		 Chr8:47743741 Stox2 within coordinates of
Tssr2563 1058 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218791674
MGI SNP Detail		 Chr8:47743754 Stox2 within coordinates of
Tssr2563 1071 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs236037737
MGI SNP Detail		 Chr8:47743808 Stox2 within coordinates of
Tssr2563 1125 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs266149195
MGI SNP Detail		 Chr8:47743868 Stox2 within coordinates of
Tssr2563 1185 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225817261
MGI SNP Detail		 Chr8:47743874 Stox2 within coordinates of
Tssr2563 1191 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A G G G G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs249260338
MGI SNP Detail		 Chr8:47744033 Stox2 within coordinates of
Tssr2563 1350 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263353200
MGI SNP Detail		 Chr8:47744119 Stox2 within coordinates of
Tssr2563 1436 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs226961272
MGI SNP Detail		 Chr8:47744239 Stox2 within coordinates of
Tssr2563 1556 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs245232622
MGI SNP Detail		 Chr8:47744261 Stox2 within coordinates of
Tssr2563 1578 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257039381
MGI SNP Detail		 Chr8:47744268 Stox2 within coordinates of
Tssr2563 1585 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs223970099
MGI SNP Detail		 Chr8:47744281 Stox2 within coordinates of
Tssr2563 1598 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254481364
MGI SNP Detail		 Chr8:47744284 Stox2 within coordinates of
Tssr2563 1601 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs217885631
MGI SNP Detail		 Chr8:47744287 Stox2 within coordinates of
Tssr2563 1604 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238334081
MGI SNP Detail		 Chr8:47744365 Stox2 within coordinates of
Tssr2563 1682 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs256888109
MGI SNP Detail		 Chr8:47744417 Stox2 within coordinates of
Tssr2563 1734 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A
rs214342353
MGI SNP Detail		 Chr8:47744434 Stox2 within coordinates of
Tssr2563 1751 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A A
rs231415749
MGI SNP Detail		 Chr8:47744436 Stox2 within coordinates of
Tssr2563 1753 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs248746866
MGI SNP Detail		 Chr8:47744450 Stox2 within coordinates of
Tssr2563 1767 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217861948
MGI SNP Detail		 Chr8:47744468 Stox2 within coordinates of
Tssr2563 1785 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs242953639
MGI SNP Detail		 Chr8:47744476 Stox2 within coordinates of
Tssr2563 1793 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261021141
MGI SNP Detail		 Chr8:47744504 Stox2 within coordinates of
Tssr2563 1821 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs226436700
MGI SNP Detail		 Chr8:47744507 Stox2 within coordinates of
Tssr2563 1824 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs246496146
MGI SNP Detail		 Chr8:47744556 Stox2 within coordinates of
Tssr2563 1873 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs259184416
MGI SNP Detail		 Chr8:47744568 Stox2 within coordinates of
Tssr2563 1885 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs220591992
MGI SNP Detail		 Chr8:47744664 Stox2 within coordinates of
Tssr2563 1981 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs239289640
MGI SNP Detail		 Chr8:47744666 Stox2 within coordinates of
Tssr2563 1983 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C C C C C C C A C C C C C C C C C C C C
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Showing SNP(s) 1 - 67 of 67
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory