About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Tssr3138
transcription start site region 3138
MGI:5930905

<< first < prev1 next > last >>
Showing SNP(s) 1 - 71 of 71

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231969044
MGI SNP Detail		 Chr10:12743326 Cpgi1300 within coordinates of
Rr224421 within coordinates of
Tssr3138 1860 bp downstream
Utrn within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29325621
MGI SNP Detail		 Chr10:12743414 Cpgi1300 within coordinates of
Rr224421 within coordinates of
Tssr3138 1772 bp downstream
Utrn within coordinates of
 SNP C/T T T C
rs218058891
MGI SNP Detail		 Chr10:12743614 Rr224421 within coordinates of
Tssr3138 1572 bp downstream
Utrn within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs224702828
MGI SNP Detail		 Chr10:12743803 Rr224421 within coordinates of
Tssr3138 1383 bp downstream
Utrn within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243182585
MGI SNP Detail		 Chr10:12743868 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 1318 bp downstream
Utrn within coordinates of
 SNP C/T C C C C T C C C C C C C C C C C C C C C C C C C C C T C T C C C C C C C C C C C C C C T C C C C C C C C C
rs214183085
MGI SNP Detail		 Chr10:12743875 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 1311 bp downstream
Utrn within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs231351599
MGI SNP Detail		 Chr10:12743921 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 1265 bp downstream
Tssr96723 within coordinates of
Utrn within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C T T C C C T C T T T C C C C C T C C T T T T C C T C C T T C C T C C C
rs263214825
MGI SNP Detail		 Chr10:12744076 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 1110 bp downstream
Utrn within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs29322791
MGI SNP Detail		 Chr10:12744245 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 941 bp downstream
Utrn within coordinates of
 SNP A/G A G A G G
rs240283647
MGI SNP Detail		 Chr10:12744249 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 937 bp downstream
Utrn within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29337731
MGI SNP Detail		 Chr10:12744250 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 936 bp downstream
Utrn within coordinates of
 SNP A/T A T A T T
rs222242212
MGI SNP Detail		 Chr10:12744278 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 908 bp downstream
Utrn within coordinates of
 SNP G/T T T T T T T T T T G T T T T T T G G T T T G T G G G T T T G T T G T T G G G G T T G T T G G T T T G T T T
rs236793553
MGI SNP Detail		 Chr10:12744280 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 906 bp downstream
Utrn within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs29370669
MGI SNP Detail		 Chr10:12744549 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 637 bp downstream
Utrn within coordinates of
 SNP C/G G C G G C C
rs220197801
MGI SNP Detail		 Chr10:12744557 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 629 bp downstream
Utrn within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G T G G G G G G T G G G G G G G G G G G G
rs581542132
MGI SNP Detail		 Chr10:12744566 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 620 bp downstream
Utrn within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs243395721
MGI SNP Detail		 Chr10:12744628 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 558 bp downstream
Utrn within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G T G G G G G T G G G G G G G
rs260759416
MGI SNP Detail		 Chr10:12744804 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 382 bp downstream
Utrn within coordinates of
 SNP G G G
rs212714568
MGI SNP Detail		 Chr10:12744976 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 210 bp downstream
Utrn within coordinates of
 SNP A A A
rs251082397
MGI SNP Detail		 Chr10:12745035 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 151 bp downstream
Utrn within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs260632774
MGI SNP Detail		 Chr10:12745045 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 141 bp downstream
Utrn within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs51078328
MGI SNP Detail		 Chr10:12745064 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 122 bp downstream
Utrn within coordinates of
 SNP A/G G A
rs243219409
MGI SNP Detail		 Chr10:12745121 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 65 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs29339976
MGI SNP Detail		 Chr10:12745303 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 72 bp upstream
 SNP A/G G G A G G A A
rs229795782
MGI SNP Detail		 Chr10:12745349 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 118 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252955149
MGI SNP Detail		 Chr10:12745383 Cpgi1301 within coordinates of
Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 152 bp upstream
Tssr96729 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs29357970
MGI SNP Detail		 Chr10:12745501 Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 270 bp upstream
 SNP C/T C C C T
rs29374541
MGI SNP Detail		 Chr10:12745598 Gm66629 within coordinates of
Rr224421 within coordinates of
Tssr3138 367 bp upstream
 SNP A/T A T A T
rs238168948
MGI SNP Detail		 Chr10:12745677 Gm66629 within coordinates of
Tssr3138 446 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs264356568
MGI SNP Detail		 Chr10:12745690 Gm66629 within coordinates of
Tssr3138 459 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs584050823
MGI SNP Detail		 Chr10:12745698 Gm66629 within coordinates of
Tssr3138 467 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217010985
MGI SNP Detail		 Chr10:12745758 Gm66629 within coordinates of
Tssr3138 527 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G C G G G G G G G G G G G G G G G G G G
rs231012591
MGI SNP Detail		 Chr10:12745856 Gm66629 within coordinates of
Tssr3138 625 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29377217
MGI SNP Detail		 Chr10:12745872 Gm66629 within coordinates of
Tssr3138 641 bp upstream
 SNP A/G A A G G G
rs220138432
MGI SNP Detail		 Chr10:12745896 Gm66629 within coordinates of
Tssr3138 665 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs587509194
MGI SNP Detail		 Chr10:12745927 Gm66629 within coordinates of
Tssr3138 696 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs246014462
MGI SNP Detail		 Chr10:12745955 Gm66629 within coordinates of
Tssr3138 724 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs259669168
MGI SNP Detail		 Chr10:12746014 Gm66629 within coordinates of
Tssr3138 783 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33569267
MGI SNP Detail		 Chr10:12746023 Gm66629 within coordinates of
Tssr3138 792 bp upstream
 SNP C/T C T T C T C T
rs248209618
MGI SNP Detail		 Chr10:12746042 Gm66629 within coordinates of
Tssr3138 811 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs29353145
MGI SNP Detail		 Chr10:12746053 Gm66629 within coordinates of
Tssr3138 822 bp upstream
 SNP C/T T C T C C C
rs218744722
MGI SNP Detail		 Chr10:12746059 Gm66629 within coordinates of
Tssr3138 828 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237216227
MGI SNP Detail		 Chr10:12746074 Gm66629 within coordinates of
Tssr3138 843 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs29334756
MGI SNP Detail		 Chr10:12746154 Gm66629 within coordinates of
Tssr3138 923 bp upstream
 SNP A/G G G G A
rs229490862
MGI SNP Detail		 Chr10:12746193 Gm66629 within coordinates of
Tssr3138 962 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs33569269
MGI SNP Detail		 Chr10:12746202 Gm66629 within coordinates of
Tssr3138 971 bp upstream
 SNP A/T T T A T A
rs263075873
MGI SNP Detail		 Chr10:12746220 Gm66629 within coordinates of
Tssr3138 989 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29381226
MGI SNP Detail		 Chr10:12746279 Gm66629 within coordinates of
Tssr3138 1048 bp upstream
 SNP A/G G G G A
rs247716982
MGI SNP Detail		 Chr10:12746343 Gm66629 within coordinates of
Tssr3138 1112 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216957976
MGI SNP Detail		 Chr10:12746397 Gm66629 within coordinates of
Tssr3138 1166 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230961848
MGI SNP Detail		 Chr10:12746410 Gm66629 within coordinates of
Tssr3138 1179 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs242696272
MGI SNP Detail		 Chr10:12746415 Gm66629 within coordinates of
Tssr3138 1184 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs215614246
MGI SNP Detail		 Chr10:12746455 Gm66629 within coordinates of
Tssr3138 1224 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236293907
MGI SNP Detail		 Chr10:12746467 Gm66629 within coordinates of
Tssr3138 1236 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29363738
MGI SNP Detail		 Chr10:12746544 Gm66629 within coordinates of
Tssr3138 1313 bp upstream
 SNP A/G G A A A A
rs29371931
MGI SNP Detail		 Chr10:12746580 Gm66629 within coordinates of
Tssr3138 1349 bp upstream
 SNP A/T A A T
rs29320732
MGI SNP Detail		 Chr10:12746623 Gm66629 within coordinates of
Tssr3138 1392 bp upstream
 SNP C/T C T C T T
rs254596884
MGI SNP Detail		 Chr10:12746643 Gm66629 within coordinates of
Tssr3138 1412 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs218779537
MGI SNP Detail		 Chr10:12746702 Gm66629 within coordinates of
Tssr3138 1471 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs237051288
MGI SNP Detail		 Chr10:12746704 Gm66629 within coordinates of
Tssr3138 1473 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs258323153
MGI SNP Detail		 Chr10:12746756 Gm66629 within coordinates of
Tssr3138 1525 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs29357972
MGI SNP Detail		 Chr10:12746762 Gm66629 within coordinates of
Tssr3138 1531 bp upstream
 SNP A/C A C A C C C
rs46534446
MGI SNP Detail		 Chr10:12746845 Gm66629 within coordinates of
Tssr3138 1614 bp upstream
 SNP A/G G A G A A
rs265406756
MGI SNP Detail		 Chr10:12746916 Gm66629 within coordinates of
Tssr3138 1685 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233553616
MGI SNP Detail		 Chr10:12746955 Gm66629 within coordinates of
Tssr3138 1724 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254416720
MGI SNP Detail		 Chr10:12747115 Gm66629 within coordinates of
Tssr3138 1884 bp upstream
 SNP A/G/T T T T T T T T T T T T T T T T T T T T G T T A T T T T A T T T T T A T T T T T T G T T T T T T T G T T T T
rs29362283
MGI SNP Detail		 Chr10:12747127 Gm66629 within coordinates of
Tssr3138 1896 bp upstream
 SNP C/T C T C C T
rs242543314
MGI SNP Detail		 Chr10:12747184 Gm66629 within coordinates of
Tssr3138 1953 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A G A A A A A A A G A A A A
rs580888768
MGI SNP Detail		 Chr10:12747210 Gm66629 within coordinates of
Tssr3138 1979 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T T T T T T T G T T T T T T T G T T T T
rs215214790
MGI SNP Detail		 Chr10:12747218 Gm66629 within coordinates of
Tssr3138 1987 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs584231784
MGI SNP Detail		 Chr10:12747225 Gm66629 within coordinates of
Tssr3138 1994 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
<< first < prev1 next > last >>
Showing SNP(s) 1 - 71 of 71
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory