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Mouse SNP Summary
Symbol
Name
ID
Tssr3500
transcription start site region 3500
MGI:5931267

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Showing SNP(s) 1 - 60 of 60

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245501953
MGI SNP Detail
Chr11:54457223 Rapgef6 within coordinates of
Tssr3500 1796 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs263373012
MGI SNP Detail
Chr11:54457248 Rapgef6 within coordinates of
Tssr3500 1771 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225838473
MGI SNP Detail
Chr11:54457410 Rapgef6 within coordinates of
Tssr3500 1609 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs26973200
MGI SNP Detail
Chr11:54457434 Rapgef6 within coordinates of
Tssr3500 1585 bp upstream
SNP C/T C C C C C C C C C C C C T C C
rs253855193
MGI SNP Detail
Chr11:54457466 Rapgef6 within coordinates of
Tssr3500 1553 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs26973199
MGI SNP Detail
Chr11:54457473 Rapgef6 within coordinates of
Tssr3500 1546 bp upstream
SNP C/T T T T T T T C T T C C T C C T
rs237414682
MGI SNP Detail
Chr11:54457597 Rapgef6 within coordinates of
Tssr3500 1422 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs584020768
MGI SNP Detail
Chr11:54457629 Rapgef6 within coordinates of
Tssr3500 1390 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256175496
MGI SNP Detail
Chr11:54457688 Rapgef6 within coordinates of
Tssr3500 1331 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs587593349
MGI SNP Detail
Chr11:54457717 Rapgef6 within coordinates of
Tssr3500 1302 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231814680
MGI SNP Detail
Chr11:54457973 Rapgef6 within coordinates of
Tssr3500 1046 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252941896
MGI SNP Detail
Chr11:54458001 Rapgef6 within coordinates of
Tssr3500 1018 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217668772
MGI SNP Detail
Chr11:54458068 Rapgef6 within coordinates of
Tssr3500 951 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233539467
MGI SNP Detail
Chr11:54458080 Rapgef6 within coordinates of
Tssr3500 939 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G A A A G G G G G G G G G G G G G G
rs243247976
MGI SNP Detail
Chr11:54458090 Rapgef6 within coordinates of
Tssr3500 929 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212432197
MGI SNP Detail
Chr11:54458133 Rapgef6 within coordinates of
Tssr3500 886 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs231197895
MGI SNP Detail
Chr11:54458182 Rapgef6 within coordinates of
Tssr3500 837 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs251424308
MGI SNP Detail
Chr11:54458236 Rapgef6 within coordinates of
Tssr3500 783 bp upstream
SNP G/T G G G G G T G G G G G G T T G G G G T T G G T G G G G T T T G G G T G T T T T T T G G G G G G G G G G G G
rs580712697
MGI SNP Detail
Chr11:54458239 Rapgef6 within coordinates of
Tssr3500 780 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs584141515
MGI SNP Detail
Chr11:54458275 Rapgef6 within coordinates of
Tssr3500 744 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs578622944
MGI SNP Detail
Chr11:54458296 Rapgef6 within coordinates of
Tssr3500 723 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs581017393
MGI SNP Detail
Chr11:54458302 Rapgef6 within coordinates of
Tssr3500 717 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214669216
MGI SNP Detail
Chr11:54458371 Rapgef6 within coordinates of
Tssr3500 648 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240135346
MGI SNP Detail
Chr11:54458477 Rapgef6 within coordinates of
Tssr3500 542 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs26973198
MGI SNP Detail
Chr11:54458539 Rapgef6 within coordinates of
Tssr3500 480 bp upstream
SNP G/T G G G G G G G G G G G T G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226431576
MGI SNP Detail
Chr11:54458569 Rapgef6 within coordinates of
Tssr3500 450 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs26973197
MGI SNP Detail
Chr11:54458575 Rapgef6 within coordinates of
Tssr3500 444 bp upstream
SNP C/T T T T T T T T T T C C T
rs584698558
MGI SNP Detail
Chr11:54458640 Rapgef6 within coordinates of
Tssr3500 379 bp upstream
SNP C/T T T T T T T T T T C T T T T C T C C T T T T T T T T T C T T T T T T T T T
rs26973196
MGI SNP Detail
Chr11:54458780 Rapgef6 within coordinates of
Tssr3500 239 bp upstream
SNP A/T T T T T T T T T T T T T A T T
rs218599698
MGI SNP Detail
Chr11:54458813 Rapgef6 within coordinates of
Tssr3500 206 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs26973195
MGI SNP Detail
Chr11:54458870 Rapgef6 within coordinates of
Rr447342 within coordinates of
Tssr3500 149 bp upstream
SNP A/G G G G G G G G G G G G G A A G
rs26973194
MGI SNP Detail
Chr11:54459035 Rapgef6 within coordinates of
Rr447342 within coordinates of
Tssr101518 within coordinates of
Tssr3500 12 bp downstream
SNP A/G A A A A A A G A A A G A A A A
rs26973193
MGI SNP Detail
Chr11:54459076 Rapgef6 within coordinates of
Rr447342 within coordinates of
Tssr3500 53 bp downstream
SNP C/G C C C C C C C C C C C C C G C
rs248819790
MGI SNP Detail
Chr11:54459385 Rapgef6 within coordinates of
Tssr3500 362 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263902260
MGI SNP Detail
Chr11:54459520 Rapgef6 within coordinates of
Tssr3500 497 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234769377
MGI SNP Detail
Chr11:54459608 Rapgef6 within coordinates of
Tssr3500 585 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs243206133
MGI SNP Detail
Chr11:54459627 Rapgef6 within coordinates of
Tssr3500 604 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs26973192
MGI SNP Detail
Chr11:54459630 Rapgef6 within coordinates of
Tssr3500 607 bp downstream
SNP A/G G G G G G G G G G G G G A G A A G
rs225292231
MGI SNP Detail
Chr11:54459718 Rapgef6 within coordinates of
Tssr3500 695 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs245358172
MGI SNP Detail
Chr11:54459896 Rapgef6 within coordinates of
Tssr3500 873 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs215457082
MGI SNP Detail
Chr11:54459924 Rapgef6 within coordinates of
Tssr3500 901 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs26973191
MGI SNP Detail
Chr11:54460034 Rapgef6 within coordinates of
Tssr3500 1011 bp downstream
SNP A/G A A A A A A A A A A G A G G A
rs258646484
MGI SNP Detail
Chr11:54460070 Rapgef6 within coordinates of
Tssr3500 1047 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs26973190
MGI SNP Detail
Chr11:54460184 Rapgef6 within coordinates of
Tssr3500 1161 bp downstream
SNP C/T T T T T T T T T T T C T T T T
rs218273497
MGI SNP Detail
Chr11:54460204 Rapgef6 within coordinates of
Tssr3500 1181 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs235352954
MGI SNP Detail
Chr11:54460231 Rapgef6 within coordinates of
Tssr3500 1208 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs248199282
MGI SNP Detail
Chr11:54460281 Rapgef6 within coordinates of
Tssr3500 1258 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs218744600
MGI SNP Detail
Chr11:54460365 Rapgef6 within coordinates of
Tssr3500 1342 bp downstream
SNP A/T T T T T T A T T T T T T A A T T T T A A T T A T T T T A A A T T T A T A A A A A A T T T T T T T A T T T
rs578999543
MGI SNP Detail
Chr11:54460373 Rapgef6 within coordinates of
Tssr3500 1350 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs582688136
MGI SNP Detail
Chr11:54460429 Rapgef6 within coordinates of
Tssr3500 1406 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs26973189
MGI SNP Detail
Chr11:54460527 Rapgef6 within coordinates of
Tssr3500 1504 bp downstream
SNP A/G G G G G G G G G G G G G A G
rs250441891
MGI SNP Detail
Chr11:54460687 Rapgef6 within coordinates of
Tssr3500 1664 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs26973188
MGI SNP Detail
Chr11:54460727 Rapgef6 within coordinates of
Tssr3500 1704 bp downstream
SNP A/G A A A A A A A A A A G A A A A
rs26973187
MGI SNP Detail
Chr11:54460829 Rapgef6 within coordinates of
Tssr3500 1806 bp downstream
SNP A/G A A A A A A G A A G A G G A
rs246244010
MGI SNP Detail
Chr11:54460834 Rapgef6 within coordinates of
Tssr3500 1811 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs265903322
MGI SNP Detail
Chr11:54460845 Rapgef6 within coordinates of
Tssr3500 1822 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs226354777
MGI SNP Detail
Chr11:54460899 Rapgef6 within coordinates of
Tssr3500 1876 bp downstream
SNP A/C A A A A A C A A A A A A C C A A A A C A A A C A A A A C C A A A A C A C C C C C C A A A A A A A C A A A
rs236974570
MGI SNP Detail
Chr11:54460940 Rapgef6 within coordinates of
Tssr3500 1917 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T
rs256437135
MGI SNP Detail
Chr11:54460973 Rapgef6 within coordinates of
Tssr3500 1950 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs225454897
MGI SNP Detail
Chr11:54460987 Rapgef6 within coordinates of
Tssr3500 1964 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
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Showing SNP(s) 1 - 60 of 60

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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory