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Mouse SNP Summary
Symbol
Name
ID
Tssr4241
transcription start site region 4241
MGI:5932008

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583087580
MGI SNP Detail
Chr13:120722648 Tssr4241 1953 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs586174454
MGI SNP Detail
Chr13:120722682 Tssr4241 1919 bp upstream
SNP C/G G C C C C C C G C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C
rs579882012
MGI SNP Detail
Chr13:120722689 Tssr4241 1912 bp upstream
SNP A/T T T A A A A A T A A A A A A A A A A A T A A A A T T A T A A T A A A A T A A A T A A A
rs583532750
MGI SNP Detail
Chr13:120722718 Tssr4241 1883 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T
rs586869055
MGI SNP Detail
Chr13:120722854 Tssr4241 1747 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs581548925
MGI SNP Detail
Chr13:120722860 Tssr4241 1741 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs583699465
MGI SNP Detail
Chr13:120722877 Tssr4241 1724 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T
rs587441616
MGI SNP Detail
Chr13:120722888 Tssr4241 1713 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs581435231
MGI SNP Detail
Chr13:120723007 Tssr4241 1594 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs584298408
MGI SNP Detail
Chr13:120723195 Tssr4241 1406 bp upstream
SNP A/T A T T A A A A A A A A A A A A A A A T A A T A A A A T A A A A A A T A A A A A A A A T A A A T A A A A
rs578511272
MGI SNP Detail
Chr13:120723275 Tssr4241 1326 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs580657516
MGI SNP Detail
Chr13:120723510 Tssr4241 1091 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T C T T T T T T T T T T
rs584790113
MGI SNP Detail
Chr13:120723513 Tssr4241 1088 bp upstream
SNP A/C C C A A A A A C A A A A A A A A A A C A A C A A A A C A A C A A A A A A A C A A A A A A C A A A
rs578672326
MGI SNP Detail
Chr13:120723603 Tssr4241 998 bp upstream
SNP C/T C T T T T T C T T T T T T T T T T T T T T T T C C T T T T T T C T T T T T T T T T C
rs582587124
MGI SNP Detail
Chr13:120723793 Tssr4241 808 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586019509
MGI SNP Detail
Chr13:120723805 Tssr4241 796 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A
rs579361952
MGI SNP Detail
Chr13:120723856 Tssr4241 745 bp upstream
SNP C/T T C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C T C C C C C C C C C C C
rs582535921
MGI SNP Detail
Chr13:120723935 Tssr4241 666 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs586281257
MGI SNP Detail
Chr13:120723937 Tssr4241 664 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C T C C C
rs579600873
MGI SNP Detail
Chr13:120723947 Tssr4241 654 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs583135516
MGI SNP Detail
Chr13:120724107 Tssr4241 494 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A
rs585900666
MGI SNP Detail
Chr13:120724118 Tssr4241 483 bp upstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579810592
MGI SNP Detail
Chr13:120724173 Tssr4241 428 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs583807759
MGI SNP Detail
Chr13:120724439 Tssr4241 162 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T
rs586734571
MGI SNP Detail
Chr13:120724525 Tssr4241 76 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs581266484
MGI SNP Detail
Alliance Variant
Chr13:120724639 Tcstv2a mRNA-UTR
Tssr4241 34 bp downstream
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs587460599
MGI SNP Detail
Alliance Variant
Chr13:120724754 Tcstv2a mRNA-UTR
Tssr4241 149 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A C A A A
rs580773927
MGI SNP Detail
Alliance Variant
Chr13:120724757 Tcstv2a mRNA-UTR
Tssr4241 152 bp downstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs578705256
MGI SNP Detail
Alliance Variant
Chr13:120724802 Tcstv2a Intron
Tcstv2a mRNA-UTR
Tssr4241 197 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs580974582
MGI SNP Detail
Alliance Variant
Chr13:120724868 Tcstv2a Intron
Tcstv2a mRNA-UTR
Tssr4241 263 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs584994606
MGI SNP Detail
Alliance Variant
Chr13:120724924 Tcstv2a Intron
Tcstv2a mRNA-UTR
Tssr4241 319 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs579063860
MGI SNP Detail
Alliance Variant
Chr13:120724931 Tcstv2a Intron
Tcstv2a mRNA-UTR
Tssr4241 326 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs582423769
MGI SNP Detail
Alliance Variant
Chr13:120724962 Tcstv2a Intron
Tcstv2a mRNA-UTR
Tssr4241 357 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs579262653
MGI SNP Detail
Alliance Variant
Chr13:120725158 Tcstv2a Intron
Tcstv2a mRNA-UTR
Tssr4241 553 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T
rs582012907
MGI SNP Detail
Alliance Variant
Chr13:120725174 Tcstv2a Intron
Tcstv2a mRNA-UTR
Tssr4241 569 bp downstream
SNP A/C A C C C C C A C C C C C C C C C C C C C C C C A A C C C C C A C A C C C C C C A C C C
rs585428188
MGI SNP Detail
Alliance Variant
Chr13:120725179 Tcstv2a Intron
Tcstv2a mRNA-UTR
Tssr4241 574 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs579997428
MGI SNP Detail
Alliance Variant
Chr13:120725640 Tcstv2a Coding-Synonymous
Tssr4241 1035 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G
rs583544950
MGI SNP Detail
Alliance Variant
Chr13:120725669 Tcstv2a Coding-NonSynonymous
Tssr4241 1064 bp downstream
SNP A/G G A G G G G G G G G G G G G G G A G G A G G G G A A G G G A G G G G G A G G G A G G G
rs585680162
MGI SNP Detail
Alliance Variant
Chr13:120725683 Tcstv2a Coding-NonSynonymous
Tssr4241 1078 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs580232572
MGI SNP Detail
Alliance Variant
Chr13:120725704 Tcstv2a Coding-NonSynonymous
Tssr4241 1099 bp downstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs583643761
MGI SNP Detail
Alliance Variant
Chr13:120725733 Tcstv2a Coding-Synonymous
Tssr4241 1128 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs587136801
MGI SNP Detail
Alliance Variant
Chr13:120725740 Tcstv2a Coding-NonSynonymous
Tssr4241 1135 bp downstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580337674
MGI SNP Detail
Alliance Variant
Chr13:120725744 Tcstv2a Coding-NonSynonymous
Tssr4241 1139 bp downstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs583222444
MGI SNP Detail
Alliance Variant
Chr13:120725745 Tcstv2a Coding-Synonymous
Tssr4241 1140 bp downstream
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs586650395
MGI SNP Detail
Alliance Variant
Chr13:120725761 Tcstv2a Coding-NonSynonymous
Tssr4241 1156 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs580718830
MGI SNP Detail
Alliance Variant
Chr13:120725762 Tcstv2a Coding-NonSynonymous
Tssr4241 1157 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A
rs584401023
MGI SNP Detail
Alliance Variant
Chr13:120725790 Tcstv2a Coding-Synonymous
Tssr4241 1185 bp downstream
SNP C/T C T C C C C C C C C C C C C C C C C C C T C C C C C C C C C T C C C C C C C C T C C C T C C C C
rs584689695
MGI SNP Detail
Alliance Variant
Chr13:120725792 Tcstv2a Coding-NonSynonymous
Tssr4241 1187 bp downstream
SNP A/G G A G G G G G G G G G G G G G G G G G G A G G G G G G G G G A G G G G G G G G A G G G A G G G G
rs581334441
MGI SNP Detail
Alliance Variant
Chr13:120725901 Tcstv2a mRNA-UTR
Tssr4241 1296 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C G C C C C C C C
rs584704655
MGI SNP Detail
Alliance Variant
Chr13:120725926 Tcstv2a mRNA-UTR
Tssr4241 1321 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs579253384
MGI SNP Detail
Alliance Variant
Chr13:120725945 Tcstv2a mRNA-UTR
Tssr4241 1340 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs582773819
MGI SNP Detail
Alliance Variant
Chr13:120725948 Tcstv2a mRNA-UTR
Tssr4241 1343 bp downstream
SNP C/G G C G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G G C G G G G G G G G C G G G C G G G G
rs578794283
MGI SNP Detail
Alliance Variant
Chr13:120725978 Tcstv2a mRNA-UTR
Tssr4241 1373 bp downstream
SNP C/T C T C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C T C C C C C C C C T C C C C C C C C
rs578486625
MGI SNP Detail
Alliance Variant
Chr13:120725995 Tcstv2a mRNA-UTR
Tssr4241 1390 bp downstream
SNP A/G G G A A A A A G A A A A A A A A A A A A G A A A A G G G G A A A G A A G A G A A A G A A G A A A G
rs581990917
MGI SNP Detail
Alliance Variant
Chr13:120726029 Tcstv2a mRNA-UTR
Tssr4241 1424 bp downstream
SNP C/T C T C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C T C C C C C C C C T C C C T C C C C
rs585534368
MGI SNP Detail
Alliance Variant
Chr13:120726040 Tcstv2a mRNA-UTR
Tssr4241 1435 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs579732014
MGI SNP Detail
Chr13:120726118 Tssr4241 1513 bp downstream
SNP A/C A C C A A A A A A A A A A A A A A A A A A A A A A C A A A A A A C A A A A A A A A C A A A A A A A
rs582356704
MGI SNP Detail
Chr13:120726123 Tssr4241 1518 bp downstream
SNP A/C C A A C C C C C C C C C C C C C C C C C C C C C C A C C C C C C A C C C C C C C C A C C C C C C C
rs585950487
MGI SNP Detail
Chr13:120726163 Tssr4241 1558 bp downstream
SNP G/T G T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G T G G G G G G G G T G G G G G G G G
rs580516415
MGI SNP Detail
Chr13:120726220 Tssr4241 1615 bp downstream
SNP C/G G G C C C C C G C C C C C C C C C C C C C C C C G G G C C C G C C G C C C C C C C C G C C C G
rs584152368
MGI SNP Detail
Chr13:120726260 Tssr4241 1655 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T A T T T T
rs587508988
MGI SNP Detail
Chr13:120726289 Tssr4241 1684 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C A C C C C
rs579695522
MGI SNP Detail
Chr13:120726340 Tssr4241 1735 bp downstream
SNP A/G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G
rs586567805
MGI SNP Detail
Chr13:120726364 Tssr4241 1759 bp downstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580867308
MGI SNP Detail
Chr13:120726374 Tssr4241 1769 bp downstream
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs584650537
MGI SNP Detail
Chr13:120726430 Tssr4241 1825 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs587298368
MGI SNP Detail
Chr13:120726431 Tssr4241 1826 bp downstream
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs581352605
MGI SNP Detail
Chr13:120726447 Tssr4241 1842 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs585361846
MGI SNP Detail
Chr13:120726486 Tssr4241 1881 bp downstream
SNP G/T G G T T T T T G T T T T T T T T T G T T G T T T T G T T G T T T G T T T T T T T G T T T G T T T T
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Showing SNP(s) 1 - 69 of 69

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
08/05/2025
MGI 6.24
The Jackson Laboratory