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Mouse SNP Summary
Symbol
Name
ID 		Tssr5402
transcription start site region 5402
MGI:5933169

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Showing SNP(s) 1 - 42 of 42

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NZB/BlNJ
NZW/Lac
NZW/LacJ
PWD/PhJ
SPRET/EiJ
WSB/EiJ
rs37477868
MGI SNP Detail		 Chr19:4086162 Gstp1 within coordinates of
Tssr5402 1886 bp downstream
 SNP C/T T T T T T T C T T T T T T T C
rs8257637
MGI SNP Detail		 Chr19:4086186 Gstp1 within coordinates of
Tssr5402 1862 bp downstream
 SNP C/G C C C C C C C C C C G
rs8257638
MGI SNP Detail		 Chr19:4086187 Gstp1 within coordinates of
Tssr5402 1861 bp downstream
 SNP G/T T T T T T T T T T G
rs8257639
MGI SNP Detail		 Chr19:4086209 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 1839 bp downstream
 SNP A/C A A A A A A A C A A C
rs8257640
MGI SNP Detail		 Chr19:4086226 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 1822 bp downstream
 SNP A/G G G G G G G G G G G A
rs8257643
MGI SNP Detail		 Chr19:4086235 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 1813 bp downstream
 SNP A/G G G G G G G G G A G G
rs8236984
MGI SNP Detail		 Chr19:4086276 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 1772 bp downstream
 SNP C/T T T T T T T T T T T T T T C
rs8240154
MGI SNP Detail		 Chr19:4086284 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 1764 bp downstream
 SNP C/T C C C C C C C T
rs8236985
MGI SNP Detail		 Chr19:4086651 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 1397 bp downstream
 SNP A/G A A A A A A A A A A A G
rs8240153
MGI SNP Detail		 Chr19:4086673 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 1375 bp downstream
 SNP C/T C C C C C C T
rs8240152
MGI SNP Detail		 Chr19:4086679 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 1369 bp downstream
 SNP A/G A A A A A A G
rs8240151
MGI SNP Detail		 Chr19:4086711 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 1337 bp downstream
 SNP A/G G G G G G G A
rs8240150
MGI SNP Detail		 Chr19:4086756 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 1292 bp downstream
 SNP A/G A A A A A A G
rs36240256
MGI SNP Detail		 Chr19:4086794 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 1254 bp downstream
 SNP A/T A A A A A A A T T A T T
rs8240148
MGI SNP Detail		 Chr19:4086859 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 1189 bp downstream
 SNP G/T T T T T G
rs38714968
MGI SNP Detail		 Chr19:4086898 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 1150 bp downstream
 SNP C/T C C C C C C C C C T C C C
rs8240145
MGI SNP Detail		 Chr19:4087278 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 770 bp downstream
 SNP A/C C C C C C C C A
rs36429730
MGI SNP Detail		 Chr19:4087491 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 557 bp downstream
 SNP A/T T T T T T A T T T T A T
rs8240143
MGI SNP Detail		 Chr19:4087573 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 475 bp downstream
 SNP A/T T T T T A
rs8240142
MGI SNP Detail		 Chr19:4087737 Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 311 bp downstream
 SNP A/G A A A A A G
rs8240141
MGI SNP Detail		 Chr19:4087764 Cpgi10381 within coordinates of
Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 284 bp downstream
 SNP A/C A A A A A C
rs8240140
MGI SNP Detail		 Chr19:4087777 Cpgi10381 within coordinates of
Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 271 bp downstream
 SNP C/T C C C C C T
rs8240139
MGI SNP Detail		 Chr19:4087812 Cpgi10381 within coordinates of
Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 236 bp downstream
 SNP C/G G G G G G C
rs39132723
MGI SNP Detail		 Chr19:4087847 Cpgi10381 within coordinates of
Gstp1 within coordinates of
Rr363267 within coordinates of
Tssr5402 201 bp downstream
 SNP C/T T T T T T T C T T T C T T T T
rs8240138
MGI SNP Detail		 Chr19:4087936 Cpgi10381 within coordinates of
Rr363267 within coordinates of
Tssr5402 112 bp downstream
 SNP C/T C C C C C C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NZB/BlNJ
NZW/Lac
NZW/LacJ
PWD/PhJ
SPRET/EiJ
WSB/EiJ
rs8240137
MGI SNP Detail		 Chr19:4088040 Cpgi10381 within coordinates of
Rr363267 within coordinates of
Tssr5402 8 bp downstream
 SNP C/T C C C C C C T
rs8240136
MGI SNP Detail		 Chr19:4088049 Cpgi10381 within coordinates of
Rr363267 within coordinates of
Tssr5402 within coordinates of
 SNP C/G G G G G G G C
rs36500062
MGI SNP Detail		 Chr19:4088062 Cpgi10381 within coordinates of
Rr363267 within coordinates of
Tssr5402 within coordinates of
 SNP C/G C C C C C C G C C C G C C C C
rs8240135
MGI SNP Detail		 Chr19:4088137 Rr363267 within coordinates of
Tssr5402 69 bp upstream
 SNP C/T T T T C
rs8240127
MGI SNP Detail		 Chr19:4088214 Rr363267 within coordinates of
Tssr5402 146 bp upstream
 SNP C/T T T T T C
rs8240128
MGI SNP Detail		 Chr19:4088334 Rr363267 within coordinates of
Tssr5402 266 bp upstream
 SNP C/G C C C C C G
rs37853295
MGI SNP Detail		 Chr19:4088357 Rr363267 within coordinates of
Tssr5402 289 bp upstream
 SNP A/T T T T T T T A T T T T T T
rs8240129
MGI SNP Detail		 Chr19:4088373 Rr363267 within coordinates of
Tssr5402 305 bp upstream
 SNP A/T T T T T T T T T A T T T A T T T T T T A T
rs8240130
MGI SNP Detail		 Chr19:4088409 Rr363267 within coordinates of
Tssr5402 341 bp upstream
 SNP C/T C C C C C T
rs8240134
MGI SNP Detail		 Chr19:4088509 Rr363267 within coordinates of
Tssr5402 441 bp upstream
 SNP A/C A A A C
rs37854936
MGI SNP Detail		 Chr19:4088779 Tssr5402 711 bp upstream
 SNP A/G A A A A A A G A A G A A A A
rs36781761
MGI SNP Detail		 Chr19:4088798 Tssr5402 730 bp upstream
 SNP G/T T T T T T T T T T T G T T T T
rs39540123
MGI SNP Detail		 Chr19:4088851 Tssr5402 783 bp upstream
 SNP C/T T T T T T T T T T C T T T T
rs39534142
MGI SNP Detail		 Chr19:4089448 Tssr5402 1380 bp upstream
 SNP A/C C C C C C A C
rs37487333
MGI SNP Detail		 Chr19:4089454 Tssr5402 1386 bp upstream
 SNP A/G G G G G G G A G G G A G G G
rs8255245
MGI SNP Detail		 Chr19:4089609 Tssr5402 1541 bp upstream
 SNP A/G A A A A A A A A G
rs8255244
MGI SNP Detail		 Chr19:4089912 Tssr5402 1844 bp upstream
 SNP C/T T T C T T
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Showing SNP(s) 1 - 42 of 42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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