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Mouse SNP Summary
Symbol
Name
ID 		Tssr5416
transcription start site region 5416
MGI:5933183

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Showing SNP(s) 1 - 54 of 54

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs37898279
MGI SNP Detail		 Chr19:5845475 Tssr5416 1863 bp downstream
 SNP A/G A A A A A A A A A G A A G A
rs227886844
MGI SNP Detail		 Chr19:5845486 Tssr5416 1852 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs249535072
MGI SNP Detail		 Chr19:5845569 Tssr5416 1769 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs37488815
MGI SNP Detail		 Chr19:5845610 Tssr5416 1728 bp downstream
 SNP C/T C C C C C C C C C T C C C C
rs13483508
MGI SNP Detail		 Chr19:5845631 Tssr5416 1707 bp downstream
 SNP A/G A A G G G A G G A A A G G G G G G G G G G G G G G G A G A G G G G A G G G G G G G G G G G G G G
rs245236562
MGI SNP Detail		 Chr19:5845658 Tssr5416 1680 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215938069
MGI SNP Detail		 Chr19:5845659 Tssr5416 1679 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs231294270
MGI SNP Detail		 Chr19:5845660 Tssr5416 1678 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250392033
MGI SNP Detail		 Chr19:5845683 Tssr5416 1655 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A G A A A A
rs36364325
MGI SNP Detail		 Chr19:5845793 Malat1 within coordinates of
Tssr5416 1545 bp downstream
 SNP A/G A A A A A A A A A G A A A A
rs237418238
MGI SNP Detail		 Chr19:5845796 Malat1 within coordinates of
Tssr5416 1542 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs36887437
MGI SNP Detail		 Chr19:5845877 Malat1 within coordinates of
Tssr5416 1461 bp downstream
 SNP A/G A A A A A A G A A A G A A A
rs37330863
MGI SNP Detail		 Chr19:5846123 Malat1 within coordinates of
Tssr5416 1215 bp downstream
 SNP G/T T T T T T T T T T T G T T T T
rs38646240
MGI SNP Detail		 Chr19:5846147 Malat1 within coordinates of
Tssr5416 1191 bp downstream
 SNP A/C A A A A A A C A A A C A A A A
rs230479455
MGI SNP Detail		 Chr19:5846208 Malat1 within coordinates of
Tssr5416 1130 bp downstream
 SNP A/G G A
rs36969060
MGI SNP Detail		 Chr19:5846233 Malat1 within coordinates of
Tssr5416 1105 bp downstream
 SNP G/T T T T T T T T T T G T T T
rs239974322
MGI SNP Detail		 Chr19:5846235 Malat1 within coordinates of
Tssr5416 1103 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264728096
MGI SNP Detail		 Chr19:5846238 Malat1 within coordinates of
Tssr5416 1100 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs37309890
MGI SNP Detail		 Chr19:5846256 Malat1 within coordinates of
Tssr5416 1082 bp downstream
 SNP A/G A A A A A A A G A A A
rs244761340
MGI SNP Detail		 Chr19:5846298 Malat1 within coordinates of
Tssr5416 1040 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs263930058
MGI SNP Detail		 Chr19:5846368 Malat1 within coordinates of
Tssr5416 970 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs228924798
MGI SNP Detail		 Chr19:5846515 Malat1 within coordinates of
Tssr5416 823 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs245009563
MGI SNP Detail		 Chr19:5846642 Malat1 within coordinates of
Tssr5416 696 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215880794
MGI SNP Detail		 Chr19:5846737 Malat1 within coordinates of
Tssr5416 601 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225288949
MGI SNP Detail		 Chr19:5846739 Malat1 within coordinates of
Tssr157648 within coordinates of
Tssr5416 599 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251356068
MGI SNP Detail		 Chr19:5846770 Malat1 within coordinates of
Tssr5416 568 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212073580
MGI SNP Detail		 Chr19:5846875 Malat1 within coordinates of
Tssr5415 within coordinates of
Tssr5416 463 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235554290
MGI SNP Detail		 Chr19:5846941 Malat1 within coordinates of
Tssr5416 397 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs37493932
MGI SNP Detail		 Chr19:5846973 Malat1 within coordinates of
Tssr157651 within coordinates of
Tssr5416 365 bp downstream
 SNP A/G G G G G A G A G
rs38768410
MGI SNP Detail		 Chr19:5847320 Malat1 within coordinates of
Tssr157656 within coordinates of
Tssr5416 18 bp downstream
 SNP C/T C C C C C C C C C T C C T C
rs37684457
MGI SNP Detail		 Chr19:5847322 Malat1 within coordinates of
Tssr157656 within coordinates of
Tssr5416 16 bp downstream
 SNP C/G G G G G G C G G G C G
rs37482823
MGI SNP Detail		 Chr19:5847533 Malat1 within coordinates of
Tssr157658 within coordinates of
Tssr5416 190 bp upstream
 SNP A/C C C C C C A C C C C C C C C C
rs233990587
MGI SNP Detail		 Chr19:5847828 Malat1 within coordinates of
Tssr5416 485 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253706793
MGI SNP Detail		 Chr19:5847865 Malat1 within coordinates of
Tssr5416 522 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219858929
MGI SNP Detail		 Chr19:5847964 Malat1 within coordinates of
Tssr5416 621 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240105858
MGI SNP Detail		 Chr19:5848051 Malat1 within coordinates of
Tssr5416 708 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs255711387
MGI SNP Detail		 Chr19:5848164 Malat1 within coordinates of
Tssr5416 821 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs221416195
MGI SNP Detail		 Chr19:5848213 Malat1 within coordinates of
Tssr5416 870 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs36500433
MGI SNP Detail		 Chr19:5848233 Malat1 within coordinates of
Tssr5416 890 bp upstream
 SNP A/G A A A A A A A A A A A A A G A
rs265859902
MGI SNP Detail		 Chr19:5848277 Malat1 within coordinates of
Tssr5416 934 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs229054067
MGI SNP Detail		 Chr19:5848293 Malat1 within coordinates of
Tssr5416 950 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs238833066
MGI SNP Detail		 Chr19:5848299 Malat1 within coordinates of
Tssr5416 956 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs257767129
MGI SNP Detail		 Chr19:5848541 Malat1 within coordinates of
Tssr157674 within coordinates of
Tssr5416 1198 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs36501786
MGI SNP Detail		 Chr19:5848677 Malat1 within coordinates of
Tssr5416 1334 bp upstream
 SNP C/G C C C C C C C C C C G C C C
rs256260416
MGI SNP Detail		 Chr19:5848683 Malat1 within coordinates of
Tssr5416 1340 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs212070026
MGI SNP Detail		 Chr19:5848772 Malat1 within coordinates of
Tssr157683 within coordinates of
Tssr5416 1429 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs36557540
MGI SNP Detail		 Chr19:5848774 Malat1 within coordinates of
Tssr5416 1431 bp upstream
 SNP C/T T T T T T T T T T C T T
rs253835850
MGI SNP Detail		 Chr19:5848794 Malat1 within coordinates of
Tssr157685 within coordinates of
Tssr5416 1451 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs36780499
MGI SNP Detail		 Chr19:5848966 Malat1 within coordinates of
Tssr5416 1623 bp upstream
 SNP A/G G G G G G G G G G A G G A G
rs234179113
MGI SNP Detail		 Chr19:5848990 Malat1 within coordinates of
Tssr5416 1647 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247272876
MGI SNP Detail		 Chr19:5848993 Malat1 within coordinates of
Tssr5416 1650 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213725656
MGI SNP Detail		 Chr19:5849026 Malat1 within coordinates of
Tssr5416 1683 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233000563
MGI SNP Detail		 Chr19:5849042 Gm55521 within coordinates of
Malat1 within coordinates of
Tssr5416 1699 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261186369
MGI SNP Detail		 Chr19:5849058 Gm55521 within coordinates of
Malat1 within coordinates of
Tssr5416 1715 bp upstream
Tssr5417 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
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Showing SNP(s) 1 - 54 of 54
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory