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Mouse SNP Summary
Symbol
Name
ID 		Tssr5860
transcription start site region 5860
MGI:5933627

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Showing SNP(s) 1 - 55 of 55

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221632124
MGI SNP Detail		 Chr1:6704195 St18 within coordinates of
Tssr5860 1999 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G G G G G G G G C G G G G G G G C G G G G
rs246364660
MGI SNP Detail		 Chr1:6704222 St18 within coordinates of
Tssr5860 1972 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
rs262962511
MGI SNP Detail		 Chr1:6704233 St18 within coordinates of
Tssr5860 1961 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228212938
MGI SNP Detail		 Chr1:6704241 St18 within coordinates of
Tssr5860 1953 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A A
rs250005871
MGI SNP Detail		 Chr1:6704479 St18 within coordinates of
Tssr5860 1715 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs260772098
MGI SNP Detail		 Chr1:6704482 St18 within coordinates of
Tssr5860 1712 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31873610
MGI SNP Detail		 Chr1:6704535 St18 within coordinates of
Tssr5860 1659 bp upstream
 SNP C/T T T T T T T C T T T T T T C T
rs31873612
MGI SNP Detail		 Chr1:6704589 St18 within coordinates of
Tssr5860 1605 bp upstream
 SNP A/G G G G G G G A G G G G G G A G
rs30693959
MGI SNP Detail		 Chr1:6704623 St18 within coordinates of
Tssr5860 1571 bp upstream
 SNP C/T C C C C C T C T T C C C C C T T
rs215756750
MGI SNP Detail		 Chr1:6704688 St18 within coordinates of
Tssr5860 1506 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231595780
MGI SNP Detail		 Chr1:6704934 St18 within coordinates of
Tssr5860 1260 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256199524
MGI SNP Detail		 Chr1:6704965 St18 within coordinates of
Tssr5860 1229 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs212061086
MGI SNP Detail		 Chr1:6705009 St18 within coordinates of
Tssr5860 1185 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236838947
MGI SNP Detail		 Chr1:6705037 St18 within coordinates of
Tssr5860 1157 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259969630
MGI SNP Detail		 Chr1:6705040 St18 within coordinates of
Tssr5860 1154 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A A
rs222451892
MGI SNP Detail		 Chr1:6705045 St18 within coordinates of
Tssr5860 1149 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs232624378
MGI SNP Detail		 Chr1:6705108 St18 within coordinates of
Tssr5860 1086 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31874157
MGI SNP Detail		 Chr1:6705202 St18 within coordinates of
Tssr5860 992 bp upstream
 SNP C/G C C C C C C C C C C C C C G C
rs221591951
MGI SNP Detail		 Chr1:6705291 St18 within coordinates of
Tssr5860 903 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs31874160
MGI SNP Detail		 Chr1:6705311 St18 within coordinates of
Tssr5860 883 bp upstream
 SNP A/T T T T T T T A T T T T T T T T
rs262655625
MGI SNP Detail		 Chr1:6705413 St18 within coordinates of
Tssr5860 781 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs6256010
MGI SNP Detail		 Chr1:6705450 St18 within coordinates of
Tssr5860 744 bp upstream
 SNP A/G A G
rs220979165
MGI SNP Detail		 Chr1:6705493 St18 within coordinates of
Tssr5860 701 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6256163
MGI SNP Detail		 Chr1:6705540 St18 within coordinates of
Tssr5860 654 bp upstream
 SNP A/G A G
rs260722104
MGI SNP Detail		 Chr1:6705640 St18 within coordinates of
Tssr5860 554 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229308397
MGI SNP Detail		 Chr1:6705690 St18 within coordinates of
Tssr5860 504 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240663412
MGI SNP Detail		 Chr1:6705736 St18 within coordinates of
Tssr5860 458 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs260104985
MGI SNP Detail		 Chr1:6705798 St18 within coordinates of
Tssr5860 396 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31874163
MGI SNP Detail		 Chr1:6705801 St18 within coordinates of
Tssr5860 393 bp upstream
 SNP A/C A A A A A A A A A A A A A C
rs251439519
MGI SNP Detail		 Chr1:6705824 St18 within coordinates of
Tssr5860 370 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs31875125
MGI SNP Detail		 Chr1:6705854 St18 within coordinates of
Tssr5860 340 bp upstream
 SNP G/T T T T T T T G T T T T T T G T
rs228764607
MGI SNP Detail		 Chr1:6705883 St18 within coordinates of
Tssr5860 311 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246693939
MGI SNP Detail		 Chr1:6705985 St18 within coordinates of
Tssr5860 209 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217072936
MGI SNP Detail		 Chr1:6706012 St18 within coordinates of
Tssr5860 182 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31875127
MGI SNP Detail		 Chr1:6706023 St18 within coordinates of
Tssr5860 171 bp upstream
 SNP A/G A A A A A A G A A A A A A G A
rs251710212
MGI SNP Detail		 Chr1:6706045 St18 within coordinates of
Tssr5860 149 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs213477400
MGI SNP Detail		 Chr1:6706048 St18 within coordinates of
Tssr5860 146 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs31875129
MGI SNP Detail		 Chr1:6706110 St18 within coordinates of
Tssr5860 84 bp upstream
 SNP C/T T T T T T T C T T T T T T C T
rs31874455
MGI SNP Detail		 Chr1:6706153 St18 within coordinates of
Tssr5860 41 bp upstream
 SNP C/T T T T T T T C T T T T T T C T
rs31874457
MGI SNP Detail		 Chr1:6706209 St18 within coordinates of
Tssr5860 within coordinates of
 SNP C/T T T T T T T C T T T T T T C T
rs31793022
MGI SNP Detail		 Chr1:6706231 St18 within coordinates of
Tssr5860 15 bp downstream
Tssr5861 within coordinates of
 SNP C/T T T T T T T C T C C T T C T T T C T C
rs578866253
MGI SNP Detail		 Chr1:6706313 St18 within coordinates of
Tssr5860 97 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs254847759
MGI SNP Detail		 Chr1:6707695 St18 within coordinates of
Tssr5860 1479 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C T T C C C C C C C C C C C C C C C C C C C C C C C C C C
rs581210184
MGI SNP Detail		 Chr1:6707763 St18 within coordinates of
Tssr5860 1547 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs31874462
MGI SNP Detail		 Chr1:6707787 St18 within coordinates of
Tssr5860 1571 bp downstream
 SNP A/G G G G G G G A G G G G G G A G
rs31875435
MGI SNP Detail		 Chr1:6707842 St18 within coordinates of
Tssr5860 1626 bp downstream
 SNP C/G C C C C C G C C C C G C C C C C C
rs260095201
MGI SNP Detail		 Chr1:6707933 St18 within coordinates of
Tssr5860 1717 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs230240049
MGI SNP Detail		 Chr1:6707988 St18 within coordinates of
Tssr5860 1772 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs31875438
MGI SNP Detail		 Chr1:6708040 St18 within coordinates of
Tssr5860 1824 bp downstream
 SNP A/C C C C C C C A C C C C C C A C
rs261379338
MGI SNP Detail		 Chr1:6708113 St18 within coordinates of
Tssr5860 1897 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31875441
MGI SNP Detail		 Chr1:6708158 St18 within coordinates of
Tssr5860 1942 bp downstream
 SNP C/T T T T T T T C T T T T T T C T
rs31876244
MGI SNP Detail		 Chr1:6708179 St18 within coordinates of
Tssr5860 1963 bp downstream
 SNP A/G G G G G G G G G G G G G A G
rs31876247
MGI SNP Detail		 Chr1:6708196 St18 within coordinates of
Tssr5860 1980 bp downstream
 SNP A/G A A A A A A A A G A A A A A A G
rs226519943
MGI SNP Detail		 Chr1:6708200 St18 within coordinates of
Tssr5860 1984 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs584946105
MGI SNP Detail		 Chr1:6708201 St18 within coordinates of
Tssr5860 1985 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T
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Showing SNP(s) 1 - 55 of 55
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory