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Mouse SNP Summary
Symbol
Name
ID 		Tssr6506
transcription start site region 6506
MGI:5934273

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Showing SNP(s) 1 - 65 of 65

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214154664
MGI SNP Detail		 Chr1:42297017 Gm28175 within coordinates of
Gm70195 within coordinates of
Rr406833 within coordinates of
Tssr6506 1946 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231376014
MGI SNP Detail		 Chr1:42297032 Gm28175 within coordinates of
Gm70195 within coordinates of
Rr406833 within coordinates of
Tssr6506 1931 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33278490
MGI SNP Detail		 Chr1:42297297 Gm28175 within coordinates of
Gm70195 within coordinates of
Rr406833 within coordinates of
Tssr6506 1666 bp upstream
 SNP A/G A A A A A A A A A A A A A G A
rs33278492
MGI SNP Detail		 Chr1:42297396 Gm28175 within coordinates of
Gm70195 within coordinates of
Rr406833 within coordinates of
Tssr6506 1567 bp upstream
 SNP A/G A G G A G G G A G A G G A G G A G
rs33279434
MGI SNP Detail		 Chr1:42297486 Gm28175 within coordinates of
Gm70195 within coordinates of
Rr406833 within coordinates of
Tssr6506 1477 bp upstream
 SNP C/T T T T T T T T T T T C T T T
rs240230380
MGI SNP Detail		 Chr1:42297488 Gm28175 within coordinates of
Gm70195 within coordinates of
Rr406833 within coordinates of
Tssr6506 1475 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33279437
MGI SNP Detail		 Chr1:42297633 Gm28175 within coordinates of
Gm70195 within coordinates of
Rr406833 within coordinates of
Tssr6506 1330 bp upstream
 SNP A/G A A G G A G G G A G A G A G A G
rs221510133
MGI SNP Detail		 Chr1:42297650 Gm28175 within coordinates of
Gm70195 within coordinates of
Rr406833 within coordinates of
Tssr6506 1313 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs236743095
MGI SNP Detail		 Chr1:42297663 Gm28175 within coordinates of
Gm70195 within coordinates of
Rr406833 within coordinates of
Tssr6506 1300 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253948399
MGI SNP Detail		 Chr1:42297682 Gm28175 within coordinates of
Gm70195 within coordinates of
Rr406833 within coordinates of
Tssr6506 1281 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs6211355
MGI SNP Detail		 Chr1:42297704 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 1259 bp upstream
 SNP A/T T A
rs31881884
MGI SNP Detail		 Chr1:42297735 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 1228 bp upstream
 SNP A/C C C A A C C A C A C A C A A C C C C A
rs258341998
MGI SNP Detail		 Chr1:42297754 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 1209 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs232400065
MGI SNP Detail		 Chr1:42297799 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 1164 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254982801
MGI SNP Detail		 Chr1:42297801 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 1162 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6211881
MGI SNP Detail		 Chr1:42297807 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 1156 bp upstream
 SNP A/G A A A A A A A G G A A A G A A G A
rs6211979
MGI SNP Detail		 Chr1:42297874 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 1089 bp upstream
 SNP A/T T A
rs6211980
MGI SNP Detail		 Chr1:42297875 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 1088 bp upstream
 SNP A/G A G
rs214070940
MGI SNP Detail		 Chr1:42297896 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 1067 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs231322710
MGI SNP Detail		 Chr1:42297925 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 1038 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs6212446
MGI SNP Detail		 Chr1:42297933 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 1030 bp upstream
 SNP C/T C C C C C T C C C T C C T C
rs215426800
MGI SNP Detail		 Chr1:42297940 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 1023 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs32511988
MGI SNP Detail		 Chr1:42297941 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 1022 bp upstream
 SNP A/G G G A A G G A G G A G A G G G G G A
rs6212485
MGI SNP Detail		 Chr1:42297964 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 999 bp upstream
 SNP A/C C C C C C C C A A C C C A C C A C
rs6225456
MGI SNP Detail		 Chr1:42298050 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 913 bp upstream
 SNP A/G A A A A A A A G G A A A G A A G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229958307
MGI SNP Detail		 Chr1:42298103 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 860 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs32744653
MGI SNP Detail		 Chr1:42298116 Gm28175 within coordinates of
Gm70195 within coordinates of
Tssr6506 847 bp upstream
 SNP C/T C T T C T T C C T C T C C C C T
rs6226516
MGI SNP Detail		 Chr1:42298231 Gm28175 within coordinates of
Tssr6506 732 bp upstream
 SNP A/G G A
rs33280523
MGI SNP Detail		 Chr1:42298620 Gm28175 within coordinates of
Tssr6506 343 bp upstream
 SNP A/G G G G G G G A G G G G G G G G
rs33281786
MGI SNP Detail		 Chr1:42298647 Gm28175 within coordinates of
Tssr6506 316 bp upstream
 SNP C/T C C C C C C T C C C C C C C
rs586297947
MGI SNP Detail		 Chr1:42299072 Gm28175 within coordinates of
Tssr6506 102 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs32330480
MGI SNP Detail		 Chr1:42299089 Gm28175 within coordinates of
Tssr6506 119 bp downstream
 SNP C/T T C T
rs265748841
MGI SNP Detail		 Chr1:42299136 Gm28175 within coordinates of
Tssr6506 166 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224384856
MGI SNP Detail		 Chr1:42299179 Gm28175 within coordinates of
Tssr6506 209 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs33281789
MGI SNP Detail		 Chr1:42299338 Gm28175 within coordinates of
Tssr6506 368 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs264149470
MGI SNP Detail		 Chr1:42299396 Gm28175 within coordinates of
Tssr6506 426 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs225265508
MGI SNP Detail		 Chr1:42299416 Gm28175 within coordinates of
Tssr6506 446 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243867038
MGI SNP Detail		 Chr1:42299426 Gm28175 within coordinates of
Tssr6506 456 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258736269
MGI SNP Detail		 Chr1:42299437 Gm28175 within coordinates of
Tssr6506 467 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32138190
MGI SNP Detail		 Chr1:42299826 Gm28175 within coordinates of
Tssr6506 856 bp downstream
 SNP G/T T T G G T T G T G T G T G T G G T G
rs246978834
MGI SNP Detail		 Chr1:42299839 Gm28175 within coordinates of
Tssr6506 869 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs32097418
MGI SNP Detail		 Chr1:42299841 Gm28175 within coordinates of
Tssr6506 871 bp downstream
 SNP G/T G G T G T G
rs233635618
MGI SNP Detail		 Chr1:42299852 Gm28175 within coordinates of
Tssr6506 882 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs31421991
MGI SNP Detail		 Chr1:42299870 Gm28175 within coordinates of
Tssr6506 900 bp downstream
 SNP A/G G G A A G G A G A G A G A G G A G A
rs31769899
MGI SNP Detail		 Chr1:42300020 Gm28175 within coordinates of
Tssr6506 1050 bp downstream
 SNP C/T C C T T C C T C C C T C T C C C C T
rs33282808
MGI SNP Detail		 Chr1:42300060 Gm28175 within coordinates of
Tssr6506 1090 bp downstream
 SNP C/G C C C C C C C C C C C C G C
rs250419079
MGI SNP Detail		 Chr1:42300098 Gm28175 within coordinates of
Tssr6506 1128 bp downstream
 SNP A/T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T A T T T T T A A T T T T T T T T T T T A T T
rs33275585
MGI SNP Detail		 Chr1:42300159 Gm28175 within coordinates of
Tssr6506 1189 bp downstream
 SNP A/T A A A A A A A A A A T A
rs231452505
MGI SNP Detail		 Chr1:42300177 Gm28175 within coordinates of
Tssr6506 1207 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32614101
MGI SNP Detail		 Chr1:42300203 Gm28175 within coordinates of
Tssr6506 1233 bp downstream
 SNP A/G G G A A G G A G G G A G A G G G G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224324647
MGI SNP Detail		 Chr1:42300232 Gm28175 within coordinates of
Tssr6506 1262 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs33275589
MGI SNP Detail		 Chr1:42300283 Gm28175 within coordinates of
Tssr6506 1313 bp downstream
 SNP C/T C C T C C T C C C C C C C
rs263885192
MGI SNP Detail		 Chr1:42300313 Gm28175 within coordinates of
Tssr6506 1343 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs219106425
MGI SNP Detail		 Chr1:42300337 Gm28175 within coordinates of
Tssr6506 1367 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237531681
MGI SNP Detail		 Chr1:42300354 Gm28175 within coordinates of
Tssr6506 1384 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C C C C C C C A C C C C C C C C C C C C
rs258661672
MGI SNP Detail		 Chr1:42300365 Gm28175 within coordinates of
Tssr6506 1395 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C C
rs226170504
MGI SNP Detail		 Chr1:42300492 Gm28175 within coordinates of
Tssr6506 1522 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A A A A A A A A T A A A A A A T A A A A
rs249653271
MGI SNP Detail		 Chr1:42300493 Gm28175 within coordinates of
Tssr6506 1523 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs263006870
MGI SNP Detail		 Chr1:42300513 Gm28175 within coordinates of
Tssr6506 1543 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T C T T T T
rs31377937
MGI SNP Detail		 Chr1:42300639 Gm28175 within coordinates of
Tssr6506 1669 bp downstream
 SNP C/T T T T T C T T C T C T C T C T
rs253718072
MGI SNP Detail		 Chr1:42300712 Gm28175 within coordinates of
Tssr6506 1742 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs212988364
MGI SNP Detail		 Chr1:42300714 Gm28175 within coordinates of
Tssr6506 1744 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs33275592
MGI SNP Detail		 Chr1:42300787 Gm28175 within coordinates of
Tssr6506 1817 bp downstream
 SNP A/G G G G G G G G G G G G A G
rs33276774
MGI SNP Detail		 Chr1:42300826 Gm28175 within coordinates of
Tssr6506 1856 bp downstream
 SNP A/G A A A A A A A A A G A
rs213588428
MGI SNP Detail		 Chr1:42300909 Gm28175 within coordinates of
Tssr6506 1939 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 65 of 65
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory