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Mouse SNP Summary
Symbol
Name
ID
Tssr6673
transcription start site region 6673
MGI:5934440

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243533031
MGI SNP Detail
Chr1:52214562 Gls within coordinates of
Rr22237 within coordinates of
Tssr6673 1973 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs214123197
MGI SNP Detail
Chr1:52214602 Gls within coordinates of
Tssr6673 1933 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237630836
MGI SNP Detail
Chr1:52214634 Gls within coordinates of
Tssr6673 1901 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs37876174
MGI SNP Detail
Chr1:52214677 Gls within coordinates of
Tssr6673 1858 bp upstream
SNP A/T T T T T T T T T T T T T T A T
rs217084702
MGI SNP Detail
Chr1:52214862 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 1673 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs242422841
MGI SNP Detail
Chr1:52214937 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 1598 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs39031396
MGI SNP Detail
Chr1:52214971 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 1564 bp upstream
SNP C/T T T T T C T T T C C T T C T
rs218506347
MGI SNP Detail
Chr1:52214993 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 1542 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs583134800
MGI SNP Detail
Chr1:52215021 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 1514 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230627070
MGI SNP Detail
Chr1:52215270 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 1265 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs36976185
MGI SNP Detail
Chr1:52215335 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 1200 bp upstream
SNP A/C C C C C C C C C C C C A
rs220374493
MGI SNP Detail
Chr1:52215356 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 1179 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs245494207
MGI SNP Detail
Chr1:52215375 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 1160 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs37090809
MGI SNP Detail
Chr1:52215396 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 1139 bp upstream
SNP A/G A A A A G A A A G G A A G A
rs230677949
MGI SNP Detail
Chr1:52215471 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 1064 bp upstream
SNP C/G G C
rs251135664
MGI SNP Detail
Chr1:52215520 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 1015 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs253846575
MGI SNP Detail
Chr1:52215550 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 985 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs36430639
MGI SNP Detail
Chr1:52215606 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 929 bp upstream
SNP A/G G G G G A G G G A A G G A G
rs39056053
MGI SNP Detail
Chr1:52215636 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 899 bp upstream
SNP A/G A A A A G A A A A G G A A G A
rs255920359
MGI SNP Detail
Chr1:52215652 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 883 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs231793390
MGI SNP Detail
Chr1:52215687 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 848 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs252866964
MGI SNP Detail
Chr1:52215693 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 842 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A
rs217828902
MGI SNP Detail
Chr1:52215731 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 804 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs36595510
MGI SNP Detail
Chr1:52215739 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 796 bp upstream
SNP C/T C C C C T C C C T T C C T C
rs249069138
MGI SNP Detail
Chr1:52215755 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 780 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212377336
MGI SNP Detail
Chr1:52215767 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 768 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231100899
MGI SNP Detail
Chr1:52215826 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 709 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs251603061
MGI SNP Detail
Chr1:52215832 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 703 bp upstream
SNP A/G G G G G G G G G A G G G G G G G G G G G G G A G G G G A A G G A G A G G G G G G A G G G G G G G A G G G G
rs223491620
MGI SNP Detail
Chr1:52215878 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 657 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs240070476
MGI SNP Detail
Chr1:52215956 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 579 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259610432
MGI SNP Detail
Chr1:52216004 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 531 bp upstream
SNP C/T C C C C C C C C T C C C C C C C C C C T C C T C C C C T T C C T C T C C C C C C T C C C C C C C C C C C C
rs226414115
MGI SNP Detail
Chr1:52216005 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 530 bp upstream
SNP A/G A A A A A A A A G A A A A A A A A A A G A A G A A A A G G A A G A G A A A A A A G A A A A A A A A A A A A
rs38031583
MGI SNP Detail
Chr1:52216030 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 505 bp upstream
SNP A/G G G G G A G G G G A G G A G
rs37068981
MGI SNP Detail
Chr1:52216043 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 492 bp upstream
SNP A/G G G G G A G G G A G G A G
rs36284801
MGI SNP Detail
Chr1:52216073 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 462 bp upstream
SNP C/T T T T T C T C T T C C T T C C
rs237546652
MGI SNP Detail
Chr1:52216095 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 440 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs256300170
MGI SNP Detail
Chr1:52216096 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 439 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs231311307
MGI SNP Detail
Chr1:52216144 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 391 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248545238
MGI SNP Detail
Chr1:52216191 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 344 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs36661232
MGI SNP Detail
Chr1:52216249 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 286 bp upstream
SNP A/G A A A A A A A A A A A A G A
rs234697443
MGI SNP Detail
Chr1:52216270 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 265 bp upstream
SNP C/T C C C C C C C C T C C C C C C C C C C C C C C C C C C T T C C T C T C C C C C C C C C C C C C C C C C C C
rs243340406
MGI SNP Detail
Chr1:52216300 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 235 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs36273227
MGI SNP Detail
Chr1:52216343 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 192 bp upstream
SNP G/T T T T T G T T T G T T T T T
rs225275426
MGI SNP Detail
Chr1:52216382 Gls within coordinates of
Rr33831 within coordinates of
Tssr6673 153 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs245305177
MGI SNP Detail
Chr1:52216408 Gls within coordinates of
Tssr6673 127 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215669873
MGI SNP Detail
Chr1:52216535 Gls within coordinates of
Tssr6673 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237922421
MGI SNP Detail
Chr1:52216559 Gls within coordinates of
Tssr6673 22 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263389323
MGI SNP Detail
Chr1:52216578 Gls within coordinates of
Tssr6673 41 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs218184983
MGI SNP Detail
Chr1:52216618 Gls within coordinates of
Tssr6673 81 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs235348157
MGI SNP Detail
Chr1:52216659 Gls within coordinates of
Tssr6673 122 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248371631
MGI SNP Detail
Chr1:52216963 Gls within coordinates of
Tssr6673 426 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218514395
MGI SNP Detail
Chr1:52217004 Gls within coordinates of
Tssr6673 467 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs237414957
MGI SNP Detail
Chr1:52217031 Gls within coordinates of
Tssr6673 494 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257808959
MGI SNP Detail
Chr1:52217036 Gls within coordinates of
Tssr6673 499 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245276409
MGI SNP Detail
Chr1:52217103 Gls within coordinates of
Tssr6673 566 bp downstream
SNP A/G G A
rs246431909
MGI SNP Detail
Chr1:52217104 Gls within coordinates of
Tssr6673 567 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265831970
MGI SNP Detail
Chr1:52217155 Gls within coordinates of
Tssr6673 618 bp downstream
SNP C/T T T T T T T T T C T T T T T T T T T T C T T C T T T T C C T T C T C T T T T T T C T T T T T T T C T T T T
rs233602103
MGI SNP Detail
Chr1:52217185 Gls within coordinates of
Tssr6673 648 bp downstream
SNP A/T T T T T T T T T A T T T T T T T T T T T T T A T T T T A A T T A T A T T T T T T A T T T T T T T T T T T T
rs236957943
MGI SNP Detail
Chr1:52217186 Gls within coordinates of
Tssr6673 649 bp downstream
SNP C/T C C C C C C C C T C C C C C C C C C C C C C T C C C C T T C C T C T C C C C C C T C C C C C C C C C C C C
rs256570796
MGI SNP Detail
Chr1:52217220 Gls within coordinates of
Tssr6673 683 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs585593374
MGI SNP Detail
Chr1:52217366 Gls within coordinates of
Tssr6673 829 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs583533534
MGI SNP Detail
Chr1:52217420 Gls within coordinates of
Tssr6673 883 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586703239
MGI SNP Detail
Chr1:52217442 Gls within coordinates of
Tssr6673 905 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs225208789
MGI SNP Detail
Chr1:52217460 Gls within coordinates of
Tssr6673 923 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs245273433
MGI SNP Detail
Chr1:52217561 Gls within coordinates of
Tssr6673 1024 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs215116386
MGI SNP Detail
Chr1:52217608 Gls within coordinates of
Tssr6673 1071 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs37716454
MGI SNP Detail
Chr1:52217751 Gls within coordinates of
Tssr6673 1214 bp downstream
SNP A/G A A A A G A A G G A A G A
rs37181914
MGI SNP Detail
Chr1:52217927 Gls within coordinates of
Tssr6673 1390 bp downstream
SNP C/T T T T T T T C T T T
rs253573568
MGI SNP Detail
Chr1:52218004 Gls within coordinates of
Tssr6673 1467 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs37525602
MGI SNP Detail
Chr1:52218054 Gls within coordinates of
Tssr6673 1517 bp downstream
SNP A/C A A A A C A A C A A A C A
rs218186311
MGI SNP Detail
Chr1:52218138 Gls within coordinates of
Tssr6673 1601 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs36850621
MGI SNP Detail
Chr1:52218267 Gls within coordinates of
Tssr6673 1730 bp downstream
SNP G/T T T T T G T T T G G T T G T
rs248286155
MGI SNP Detail
Chr1:52218299 Gls within coordinates of
Tssr6673 1762 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213088224
MGI SNP Detail
Chr1:52218336 Gls within coordinates of
Tssr6673 1799 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A A A
rs36807992
MGI SNP Detail
Chr1:52218349 Gls within coordinates of
Tssr6673 1812 bp downstream
SNP G/T T T T T G T T G G T T G G
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Showing SNP(s) 1 - 75 of 75

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory