About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Tssr6807
transcription start site region 6807
MGI:5934574

<< first < prev1 next > last >>
Showing SNP(s) 1 - 73 of 73

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF
MOLF/EiJ
MRL/MpJ
MSM
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs16782856
MGI SNP Detail		 Chr1:58765886 Cflar within coordinates of
Tssr6807 1925 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G
rs239598234
MGI SNP Detail		 Chr1:58766056 Cflar within coordinates of
Tssr6807 1755 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs16789179
MGI SNP Detail		 Chr1:58766131 Cflar within coordinates of
Tssr6807 1680 bp upstream
 SNP A/G A A A A A A A A G A A A A A A G A G A A G
rs16789178
MGI SNP Detail		 Chr1:58766186 Cflar within coordinates of
Rr411490 within coordinates of
Tssr6807 1625 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C T
rs241962701
MGI SNP Detail		 Chr1:58766269 Cflar within coordinates of
Rr411490 within coordinates of
Tssr11791 within coordinates of
Tssr6807 1542 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C A A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs253785662
MGI SNP Detail		 Chr1:58766344 Cflar within coordinates of
Rr411490 within coordinates of
Tssr6807 1467 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs222595787
MGI SNP Detail		 Chr1:58766381 Cflar within coordinates of
Rr411490 within coordinates of
Tssr6807 1430 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs240770676
MGI SNP Detail		 Chr1:58766428 Cflar within coordinates of
Rr411490 within coordinates of
Tssr6807 1383 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs258075368
MGI SNP Detail		 Chr1:58766458 Cflar within coordinates of
Rr411490 within coordinates of
Tssr6807 1353 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs232423653
MGI SNP Detail		 Chr1:58766525 Cflar within coordinates of
Rr411490 within coordinates of
Tssr6807 1286 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A C C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs257360856
MGI SNP Detail		 Chr1:58766589 Cflar within coordinates of
Rr411490 within coordinates of
Tssr6807 1222 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262829724
MGI SNP Detail		 Chr1:58766610 Cflar within coordinates of
Rr411490 within coordinates of
Tssr6807 1201 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230421426
MGI SNP Detail		 Chr1:58766643 Cflar within coordinates of
Tssr6807 1168 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs250112546
MGI SNP Detail		 Chr1:58766753 Cflar within coordinates of
Tssr6807 1058 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs212302939
MGI SNP Detail		 Chr1:58766768 Cflar within coordinates of
Tssr6807 1043 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236674780
MGI SNP Detail		 Chr1:58766831 Cflar within coordinates of
Tssr6807 980 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs248351436
MGI SNP Detail		 Chr1:58767030 Cflar within coordinates of
Tssr6807 781 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs216306309
MGI SNP Detail		 Chr1:58767076 Cflar within coordinates of
Tssr6807 735 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238289478
MGI SNP Detail		 Chr1:58767121 Cflar within coordinates of
Tssr6807 690 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs262256415
MGI SNP Detail		 Chr1:58767172 Cflar within coordinates of
Tssr6807 639 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs213406560
MGI SNP Detail		 Chr1:58767246 Cflar within coordinates of
Tssr6807 565 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236962007
MGI SNP Detail		 Chr1:58767259 Cflar within coordinates of
Tssr6807 552 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs247972020
MGI SNP Detail		 Chr1:58767302 Cflar within coordinates of
Tssr6807 509 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T G G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs222507002
MGI SNP Detail		 Chr1:58767369 Cflar within coordinates of
Tssr6807 442 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240733933
MGI SNP Detail		 Chr1:58767375 Cflar within coordinates of
Tssr6807 436 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF
MOLF/EiJ
MRL/MpJ
MSM
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251896970
MGI SNP Detail		 Chr1:58767382 Cflar within coordinates of
Tssr6807 429 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs224147627
MGI SNP Detail		 Chr1:58767472 Cflar within coordinates of
Rr411491 within coordinates of
Tssr6807 339 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244128541
MGI SNP Detail		 Chr1:58767477 Cflar within coordinates of
Rr411491 within coordinates of
Tssr6807 334 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265304389
MGI SNP Detail		 Chr1:58767500 Cflar within coordinates of
Rr411491 within coordinates of
Tssr6807 311 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs230063970
MGI SNP Detail		 Chr1:58767501 Cflar within coordinates of
Rr411491 within coordinates of
Tssr6807 310 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238194756
MGI SNP Detail		 Chr1:58767513 Cflar within coordinates of
Rr411491 within coordinates of
Tssr6807 298 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs256210901
MGI SNP Detail		 Chr1:58767569 Cflar within coordinates of
Rr411491 within coordinates of
Tssr6807 242 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229445122
MGI SNP Detail		 Chr1:58767570 Cflar within coordinates of
Rr411491 within coordinates of
Tssr6807 241 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A G G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs248260723
MGI SNP Detail		 Chr1:58767757 Cflar within coordinates of
Tssr6807 54 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216217795
MGI SNP Detail		 Chr1:58767774 Cflar within coordinates of
Tssr6806 within coordinates of
Tssr6807 37 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232574246
MGI SNP Detail		 Chr1:58767853 Cflar within coordinates of
Tssr6807 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251903285
MGI SNP Detail		 Chr1:58767883 Cflar within coordinates of
Tssr6807 26 bp downstream
Tssr6808 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213770871
MGI SNP Detail		 Chr1:58767926 Cflar within coordinates of
Tssr6807 69 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs235166037
MGI SNP Detail		 Chr1:58767970 Cflar within coordinates of
Tssr6807 113 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs247937183
MGI SNP Detail		 Chr1:58767991 Cflar within coordinates of
Tssr6807 134 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217174189
MGI SNP Detail		 Chr1:58767995 Cflar within coordinates of
Tssr6807 138 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs234114530
MGI SNP Detail		 Chr1:58768053 Cflar within coordinates of
Tssr6807 196 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs251825870
MGI SNP Detail		 Chr1:58768078 Cflar within coordinates of
Tssr6807 221 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224137772
MGI SNP Detail		 Chr1:58768081 Cflar within coordinates of
Tssr6807 224 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246801372
MGI SNP Detail		 Chr1:58768096 Cflar within coordinates of
Tssr6807 239 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T A A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs257059919
MGI SNP Detail		 Chr1:58768136 Cflar within coordinates of
Tssr6807 279 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs222173795
MGI SNP Detail		 Chr1:58768198 Cflar within coordinates of
Tssr6807 341 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs16789186
MGI SNP Detail		 Chr1:58768382 Cflar within coordinates of
Tssr6807 525 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T
rs16789185
MGI SNP Detail		 Chr1:58768556 Cflar within coordinates of
Tssr6807 699 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T
rs16789184
MGI SNP Detail		 Chr1:58768607 Cflar within coordinates of
Tssr6807 750 bp downstream
 SNP C/T C C C C C C C C C C C C C C T C T C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF
MOLF/EiJ
MRL/MpJ
MSM
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs16789183
MGI SNP Detail		 Chr1:58768629 Cflar within coordinates of
Tssr6807 772 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G
rs16789182
MGI SNP Detail		 Chr1:58768641 Cflar within coordinates of
Tssr6807 784 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G
rs16789181
MGI SNP Detail		 Chr1:58768658 Cflar within coordinates of
Tssr6807 801 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T
rs16789180
MGI SNP Detail		 Chr1:58768667 Cflar within coordinates of
Tssr6807 810 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A
rs214284012
MGI SNP Detail		 Chr1:58768753 Cflar within coordinates of
Tssr6807 896 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223943429
MGI SNP Detail		 Chr1:58768940 Cflar within coordinates of
Tssr6807 1083 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs6299946
MGI SNP Detail		 Chr1:58768997 Cflar within coordinates of
Tssr6807 1140 bp downstream
 SNP C/T C T
rs217119664
MGI SNP Detail		 Chr1:58769077 Cflar within coordinates of
Tssr6807 1220 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs6300078
MGI SNP Detail		 Chr1:58769086 Cflar within coordinates of
Tssr6807 1229 bp downstream
 SNP C/G G C
rs6300521
MGI SNP Detail		 Chr1:58769108 Cflar within coordinates of
Tssr6807 1251 bp downstream
 SNP A/G A G
rs215959972
MGI SNP Detail		 Chr1:58769110 Cflar within coordinates of
Tssr6807 1253 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs236894742
MGI SNP Detail		 Chr1:58769144 Cflar within coordinates of
Tssr6807 1287 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs6300592
MGI SNP Detail		 Chr1:58769153 Cflar within coordinates of
Tssr6807 1296 bp downstream
 SNP C/T T C
rs221451678
MGI SNP Detail		 Chr1:58769202 Cflar within coordinates of
Tssr6807 1345 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs229888854
MGI SNP Detail		 Chr1:58769216 Cflar within coordinates of
Tssr6807 1359 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249685026
MGI SNP Detail		 Chr1:58769246 Cflar within coordinates of
Tssr6807 1389 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs6301148
MGI SNP Detail		 Chr1:58769253 Cflar within coordinates of
Tssr6807 1396 bp downstream
 SNP A/G G A A G
rs6301198
MGI SNP Detail		 Chr1:58769283 Cflar within coordinates of
Tssr6807 1426 bp downstream
 SNP A/G A G
rs263717191
MGI SNP Detail		 Chr1:58769284 Cflar within coordinates of
Tssr6807 1427 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224506208
MGI SNP Detail		 Chr1:58769364 Cflar within coordinates of
Tssr6807 1507 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244478831
MGI SNP Detail		 Chr1:58769372 Cflar within coordinates of
Tssr6807 1515 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs265153461
MGI SNP Detail		 Chr1:58769374 Cflar within coordinates of
Tssr6807 1517 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs584045384
MGI SNP Detail		 Chr1:58769486 Cflar within coordinates of
Tssr6807 1629 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
<< first < prev1 next > last >>
Showing SNP(s) 1 - 73 of 73
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
Building initial tooltip...