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Mouse SNP Summary
Symbol
Name
ID 		Tssr7749
transcription start site region 7749
MGI:5935516

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217178772
MGI SNP Detail		 Chr1:86285322 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1953 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs242402977
MGI SNP Detail		 Chr1:86285325 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1950 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254528137
MGI SNP Detail		 Chr1:86285432 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1843 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581295915
MGI SNP Detail		 Chr1:86285484 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1791 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs211821236
MGI SNP Detail		 Chr1:86285489 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1786 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T A A T T T T T T T T T T T T T T T T T A T T T T T
rs584466979
MGI SNP Detail		 Chr1:86285501 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1774 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230442964
MGI SNP Detail		 Chr1:86285506 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1769 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G T G G G G T T G G G G G G G G G G G G G G G G G G G G G T G G G G G G
rs249347161
MGI SNP Detail		 Chr1:86285559 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1716 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs220026728
MGI SNP Detail		 Chr1:86285563 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1712 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs579320775
MGI SNP Detail		 Chr1:86285655 D1Mit516 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1620 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582532459
MGI SNP Detail		 Chr1:86285656 D1Mit516 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1619 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs223974716
MGI SNP Detail		 Chr1:86285658 D1Mit516 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1617 bp upstream
 SNP A/G G A
rs387827680
MGI SNP Detail		 Chr1:86285688 D1Mit516 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1587 bp upstream
 SNP A/G A A A A A A A A A G A A A A A A A A A A A
rs237808024
MGI SNP Detail		 Chr1:86285943 Ncl within coordinates of
Rr29752 within coordinates of
Tssr12786 within coordinates of
Tssr7749 1332 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263329969
MGI SNP Detail		 Chr1:86286003 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1272 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs225664533
MGI SNP Detail		 Chr1:86286039 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1236 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T T T T C T T T T C C T T T
rs251063211
MGI SNP Detail		 Chr1:86286046 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1229 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs261421286
MGI SNP Detail		 Chr1:86286062 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1213 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218280463
MGI SNP Detail		 Chr1:86286155 Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 1120 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs238147304
MGI SNP Detail		 Chr1:86286334 Cpgi503 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 941 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs257568595
MGI SNP Detail		 Chr1:86286381 Cpgi503 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 894 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T T T T C T T T C C T T T
rs30913560
MGI SNP Detail		 Chr1:86286401 Cpgi503 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 874 bp upstream
 SNP A/G G G G A
rs252742804
MGI SNP Detail		 Chr1:86286419 Cpgi503 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 856 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A A A A C A A A C C A A A
rs265808116
MGI SNP Detail		 Chr1:86286423 Cpgi503 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 852 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs233397971
MGI SNP Detail		 Chr1:86286446 Cpgi503 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 829 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247685545
MGI SNP Detail		 Chr1:86286497 Cpgi503 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 778 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs211861774
MGI SNP Detail		 Chr1:86286525 Cpgi503 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 750 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G G G G A G G G A A G G G
rs230478751
MGI SNP Detail		 Chr1:86286527 Cpgi503 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 748 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G G G G C G G G C C G G G
rs243521981
MGI SNP Detail		 Chr1:86286630 Cpgi503 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 645 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs214124732
MGI SNP Detail		 Chr1:86286692 Cpgi503 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr12788 within coordinates of
Tssr7749 583 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs239544869
MGI SNP Detail		 Chr1:86286695 Cpgi503 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr12788 within coordinates of
Tssr7749 580 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs259469077
MGI SNP Detail		 Chr1:86286832 Cpgi503 within coordinates of
Ncl within coordinates of
Rr29752 within coordinates of
Tssr7749 443 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A A A A G A A A G G A A A
rs226132448
MGI SNP Detail		 Chr1:86287209 Cpgi503 within coordinates of
Rr29752 within coordinates of
Rr396146 within coordinates of
Tssr7749 66 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240200537
MGI SNP Detail		 Chr1:86287279 Cpgi503 within coordinates of
Rr29752 within coordinates of
Rr396146 within coordinates of
Tssr7749 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T
rs249439323
MGI SNP Detail		 Chr1:86287332 C130036L24Rik within coordinates of
Cpgi503 within coordinates of
Rr29752 within coordinates of
Rr396146 within coordinates of
Tssr7749 20 bp downstream
 SNP C/G/T G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs218315898
MGI SNP Detail		 Chr1:86287385 C130036L24Rik within coordinates of
Cpgi503 within coordinates of
Gm71192 within coordinates of
Rr29752 within coordinates of
Tssr7749 73 bp downstream
Tssr7750 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs246641920
MGI SNP Detail		 Chr1:86287431 C130036L24Rik within coordinates of
Cpgi503 within coordinates of
Gm71192 within coordinates of
Rr29752 within coordinates of
Tssr7749 119 bp downstream
 SNP A/G G A
rs238287085
MGI SNP Detail		 Chr1:86287499 C130036L24Rik within coordinates of
Cpgi503 within coordinates of
Gm71192 within coordinates of
Rr29752 within coordinates of
Tssr7749 187 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251366299
MGI SNP Detail		 Chr1:86287529 C130036L24Rik within coordinates of
Cpgi503 within coordinates of
Gm71192 within coordinates of
Rr29752 within coordinates of
Tssr7749 217 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582369927
MGI SNP Detail		 Chr1:86287613 C130036L24Rik within coordinates of
Cpgi503 within coordinates of
Gm71192 within coordinates of
Rr29752 within coordinates of
Tssr7749 301 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T T T T C T T T T C C T T T
rs223555991
MGI SNP Detail		 Chr1:86287823 C130036L24Rik within coordinates of
Cpgi503 within coordinates of
Rr29752 within coordinates of
Tssr7749 511 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262203246
MGI SNP Detail		 Chr1:86287847 C130036L24Rik within coordinates of
Cpgi503 within coordinates of
Rr29752 within coordinates of
Tssr7749 535 bp downstream
 SNP A/C C A
rs247873157
MGI SNP Detail		 Chr1:86287971 C130036L24Rik within coordinates of
Cpgi503 within coordinates of
Rr29752 within coordinates of
Tssr7749 659 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T C T T T T C C T T T
rs228898742
MGI SNP Detail		 Chr1:86287973 C130036L24Rik within coordinates of
Cpgi503 within coordinates of
Rr29752 within coordinates of
Tssr7749 661 bp downstream
 SNP C/T T C
rs234444390
MGI SNP Detail		 Chr1:86288025 C130036L24Rik within coordinates of
Cpgi503 within coordinates of
Rr29752 within coordinates of
Tssr7749 713 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A G A A A A G G A A A
rs241828920
MGI SNP Detail		 Chr1:86288253 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 941 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs254106844
MGI SNP Detail		 Chr1:86288308 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 996 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C C C C A C C C C A A C C
rs224702322
MGI SNP Detail		 Chr1:86288359 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1047 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243639128
MGI SNP Detail		 Chr1:86288369 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1057 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs214844751
MGI SNP Detail		 Chr1:86288441 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1129 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32714763
MGI SNP Detail		 Chr1:86288502 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1190 bp downstream
 SNP C/T C C T T
rs32292249
MGI SNP Detail		 Chr1:86288538 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1226 bp downstream
 SNP C/T T T C C
rs217988645
MGI SNP Detail		 Chr1:86288548 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1236 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs31379206
MGI SNP Detail		 Chr1:86288566 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1254 bp downstream
 SNP A/G A A G G G A
rs249580415
MGI SNP Detail		 Chr1:86288604 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1292 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs256394457
MGI SNP Detail		 Chr1:86288609 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1297 bp downstream
 SNP C/T T C
rs231541534
MGI SNP Detail		 Chr1:86288645 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1333 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs251401597
MGI SNP Detail		 Chr1:86288670 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1358 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs223317550
MGI SNP Detail		 Chr1:86288684 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1372 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T G T T T T G G T T T T T T T T T T T T T T T T T T T T T G T T T T T T
rs229440276
MGI SNP Detail		 Chr1:86288703 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1391 bp downstream
 SNP C/T C T
rs263376291
MGI SNP Detail		 Chr1:86288721 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1409 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G G G A G
rs226194982
MGI SNP Detail		 Chr1:86288751 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1439 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs30805222
MGI SNP Detail		 Chr1:86288878 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1566 bp downstream
 SNP A/T A A A T T A
rs254230664
MGI SNP Detail		 Chr1:86288931 C130036L24Rik within coordinates of
Rr29752 within coordinates of
Tssr7749 1619 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T A T T T T T T A T
rs585840967
MGI SNP Detail		 Chr1:86289099 C130036L24Rik within coordinates of
Tssr7749 1787 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs32137946
MGI SNP Detail		 Chr1:86289173 C130036L24Rik within coordinates of
Tssr7749 1861 bp downstream
 SNP A/G A A A G G G A
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Showing SNP(s) 1 - 66 of 66
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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