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Mouse SNP Summary
Symbol
Name
ID 		Tssr9289
transcription start site region 9289
MGI:5937056

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33667751
MGI SNP Detail		 Chr1:149980417 Ptgs2 within coordinates of
Tssr9289 1943 bp upstream
 SNP A/G G G G G G G G G G G G G G A G
rs583344556
MGI SNP Detail		 Chr1:149980439 Ptgs2 within coordinates of
Tssr9289 1921 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582434214
MGI SNP Detail		 Chr1:149980547 Ptgs2 within coordinates of
Tssr9289 1813 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs583388868
MGI SNP Detail		 Chr1:149980565 Ptgs2 within coordinates of
Tssr9289 1795 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs8238847
MGI SNP Detail		 Chr1:149980582 Ptgs2 within coordinates of
Tssr9289 1778 bp upstream
 SNP A/C A A A C A A A A C A A C A C C A C A A A A A A
rs580736816
MGI SNP Detail		 Chr1:149980587 Ptgs2 within coordinates of
Tssr9289 1773 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs584292921
MGI SNP Detail		 Chr1:149980603 Ptgs2 within coordinates of
Tssr9289 1757 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs8238846
MGI SNP Detail		 Chr1:149980646 Ptgs2 within coordinates of
Tssr9289 1714 bp upstream
 SNP A/G A A A A A A G A G A A A A G A G A A A G A
rs581611286
MGI SNP Detail		 Chr1:149980857 Ptgs2 within coordinates of
Tssr9289 1503 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs585005461
MGI SNP Detail		 Chr1:149980992 Ptgs2 within coordinates of
Tssr9289 1368 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs8238853
MGI SNP Detail		 Chr1:149980999 Ptgs2 within coordinates of
Tssr9289 1361 bp upstream
 SNP A/G G G G G G G G G G G A G G G G G G G G G
rs8238852
MGI SNP Detail		 Chr1:149981011 Ptgs2 within coordinates of
Tssr9289 1349 bp upstream
 SNP C/T T T T T T T T C T T
rs584591122
MGI SNP Detail		 Chr1:149981012 Ptgs2 within coordinates of
Tssr9289 1348 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs33667750
MGI SNP Detail		 Chr1:149981016 Ptgs2 within coordinates of
Tssr9289 1344 bp upstream
 SNP A/G G G G G A G G G G A G G G G
rs578774616
MGI SNP Detail		 Chr1:149981018 Ptgs2 within coordinates of
Tssr9289 1342 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs8238849
MGI SNP Detail		 Chr1:149981037 Ptgs2 within coordinates of
Tssr9289 1323 bp upstream
 SNP C/T C C C C C C C T C C C T
rs220345470
MGI SNP Detail		 Chr1:149981041 Ptgs2 within coordinates of
Tssr9289 1319 bp upstream
 SNP A/G G A
rs8238848
MGI SNP Detail		 Chr1:149981056 Ptgs2 within coordinates of
Tssr9289 1304 bp upstream
 SNP C/T T T T T T T C T T
rs237642089
MGI SNP Detail		 Chr1:149981075 Ptgs2 within coordinates of
Tssr9289 1285 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs244437042
MGI SNP Detail		 Chr1:149981076 Ptgs2 within coordinates of
Tssr9289 1284 bp upstream
 SNP C/T C T
rs33667749
MGI SNP Detail		 Chr1:149981078 Ptgs2 within coordinates of
Tssr9289 1282 bp upstream
 SNP A/G G G G G A G G G G G A G G G A G
rs33667748
MGI SNP Detail		 Chr1:149981111 Ptgs2 within coordinates of
Tssr9289 1249 bp upstream
 SNP C/T T T T T C T C T T T T C T T T C T
rs8238859
MGI SNP Detail		 Chr1:149981146 Ptgs2 within coordinates of
Tssr9269 within coordinates of
Tssr9289 1214 bp upstream
 SNP A/G A A A A A A A G A G A A A A G A A A G A
rs8238860
MGI SNP Detail		 Chr1:149981236 Ptgs2 within coordinates of
Tssr9272 within coordinates of
Tssr9289 1124 bp upstream
 SNP A/G G G G G G G G A G A G G G G A G G G A G
rs582752809
MGI SNP Detail		 Chr1:149981248 Ptgs2 within coordinates of
Tssr9289 1112 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233518836
MGI SNP Detail		 Chr1:149981332 Ptgs2 within coordinates of
Tssr9275 within coordinates of
Tssr9289 1028 bp upstream
 SNP C/T C T
rs8238861
MGI SNP Detail		 Chr1:149981547 Ptgs2 within coordinates of
Tssr9289 813 bp upstream
 SNP A/G A A A A A A A G
rs33667747
MGI SNP Detail		 Chr1:149981602 Ptgs2 within coordinates of
Tssr9289 758 bp upstream
 SNP G/T T T T T T T T T T T G T T T G T
rs33667746
MGI SNP Detail		 Chr1:149981845 Ptgs2 within coordinates of
Tssr9289 515 bp upstream
 SNP C/T T T T T C T T T T T T C T T T C T
rs240633397
MGI SNP Detail		 Chr1:149981885 Ptgs2 within coordinates of
Tssr9289 475 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs8238862
MGI SNP Detail		 Chr1:149981889 Ptgs2 within coordinates of
Tssr9289 471 bp upstream
 SNP C/T C C C C C T C T C C C C T C C C T T C
rs222062194
MGI SNP Detail		 Chr1:149982021 Ptgs2 within coordinates of
Tssr9289 339 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs246393937
MGI SNP Detail		 Chr1:149982022 Ptgs2 within coordinates of
Tssr9289 338 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs256359613
MGI SNP Detail		 Chr1:149982130 Ptgs2 within coordinates of
Tssr9289 230 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220839407
MGI SNP Detail		 Chr1:149982131 Ptgs2 within coordinates of
Tssr9289 229 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs240191823
MGI SNP Detail		 Chr1:149982146 Ptgs2 within coordinates of
Tssr9289 214 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33667745
MGI SNP Detail		 Chr1:149982158 Ptgs2 within coordinates of
Tssr9289 202 bp upstream
 SNP A/G G G G G G A G G G G G G A A G G G A G
rs33667744
MGI SNP Detail		 Chr1:149982218 Ptgs2 within coordinates of
Tssr9289 142 bp upstream
 SNP G/T G G G G G G G G G T G G G G G
rs259254856
MGI SNP Detail		 Chr1:149982222 Ptgs2 within coordinates of
Tssr9289 138 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs580162735
MGI SNP Detail		 Chr1:149982292 Ptgs2 within coordinates of
Tssr9289 68 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs234835770
MGI SNP Detail		 Chr1:149982309 Ptgs2 within coordinates of
Tssr9289 51 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs8238863
MGI SNP Detail		 Chr1:149982343 Ptgs2 within coordinates of
Tssr9288 within coordinates of
Tssr9289 17 bp upstream
 SNP A/C A A A A C A A
rs33666513
MGI SNP Detail		 Chr1:149982354 Ptgs2 within coordinates of
Tssr9289 6 bp upstream
 SNP C/T T T T T T T T T T T T T T C T
rs229842698
MGI SNP Detail		 Chr1:149982621 Ptgs2 within coordinates of
Tssr9289 254 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs8238864
MGI SNP Detail		 Chr1:149982691 Ptgs2 within coordinates of
Tssr9289 324 bp downstream
Tssr9292 within coordinates of
 SNP C/T T T T T T T T T T T C
rs8238865
MGI SNP Detail		 Chr1:149982737 Ptgs2 within coordinates of
Tssr9289 370 bp downstream
 SNP C/T C C C C C C C C C C C T T
rs8238866
MGI SNP Detail		 Chr1:149982745 Ptgs2 within coordinates of
Tssr9289 378 bp downstream
 SNP A/G G G G G G G G G G A
rs8238868
MGI SNP Detail		 Chr1:149982783 Ptgs2 within coordinates of
Tssr9289 416 bp downstream
Tssr9297 within coordinates of
 SNP A/G G G G G G G G G G A
rs8238870
MGI SNP Detail		 Chr1:149982874 Ptgs2 within coordinates of
Tssr9289 507 bp downstream
 SNP C/T C C C C C C C C C C T
rs218934678
MGI SNP Detail		 Chr1:149982947 Ptgs2 within coordinates of
Tssr9289 580 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33666512
MGI SNP Detail		 Chr1:149983034 Ptgs2 within coordinates of
Tssr9289 667 bp downstream
 SNP A/G A A A G A G A A A A G A A G G A
rs246403191
MGI SNP Detail		 Chr1:149983262 Ptgs2 within coordinates of
Tssr9289 895 bp downstream
Tssr9313 within coordinates of
 SNP A/G G A
rs217403936
MGI SNP Detail		 Chr1:149983324 Ptgs2 within coordinates of
Tssr9289 957 bp downstream
 SNP A/G G A
rs239537691
MGI SNP Detail		 Chr1:149983367 Ptgs2 within coordinates of
Tssr9289 1000 bp downstream
Tssr9315 within coordinates of
 SNP A/T T A
rs221446391
MGI SNP Detail		 Chr1:149983450 Ptgs2 within coordinates of
Tssr9289 1083 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231721088
MGI SNP Detail		 Chr1:149983565 Ptgs2 within coordinates of
Tssr9289 1198 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250875000
MGI SNP Detail		 Chr1:149983644 Ptgs2 within coordinates of
Tssr9289 1277 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs220800365
MGI SNP Detail		 Chr1:149983648 Ptgs2 within coordinates of
Tssr9289 1281 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs240154600
MGI SNP Detail		 Chr1:149983737 Ptgs2 within coordinates of
Tssr9289 1370 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs259184960
MGI SNP Detail		 Chr1:149983755 Ptgs2 within coordinates of
Tssr9289 1388 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226865110
MGI SNP Detail		 Chr1:149983777 Ptgs2 within coordinates of
Tssr9289 1410 bp downstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs244241804
MGI SNP Detail		 Chr1:149983992 Tssr9289 1625 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs261623230
MGI SNP Detail		 Chr1:149984002 Tssr9289 1635 bp downstream
 SNP A/G G A
rs220625166
MGI SNP Detail		 Chr1:149984009 Tssr9289 1642 bp downstream
 SNP A/T T A
rs239240778
MGI SNP Detail		 Chr1:149984067 Tssr9289 1700 bp downstream
 SNP A/G G A
rs230078364
MGI SNP Detail		 Chr1:149984108 Tssr9289 1741 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs249977219
MGI SNP Detail		 Chr1:149984130 Tssr9289 1763 bp downstream
 SNP A/T A T
rs221591669
MGI SNP Detail		 Chr1:149984137 Tssr9289 1770 bp downstream
 SNP C/T T C
rs259095622
MGI SNP Detail		 Chr1:149984154 Tssr9289 1787 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs227824368
MGI SNP Detail		 Chr1:149984171 Tssr9289 1804 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247663094
MGI SNP Detail		 Chr1:149984196 Tssr9289 1829 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs218690329
MGI SNP Detail		 Chr1:149984259 Tssr9289 1892 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs227379745
MGI SNP Detail		 Chr1:149984260 Tssr9289 1893 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs253820220
MGI SNP Detail		 Chr1:149984271 Tssr9289 1904 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs239512405
MGI SNP Detail		 Chr1:149984277 Tssr9289 1910 bp downstream
 SNP A/G A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213094801
MGI SNP Detail		 Chr1:149984298 Tssr9289 1931 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231686998
MGI SNP Detail		 Chr1:149984299 Tssr9289 1932 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250841262
MGI SNP Detail		 Chr1:149984321 Tssr9289 1954 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215578947
MGI SNP Detail		 Chr1:149984345 Tssr9289 1978 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233915807
MGI SNP Detail		 Chr1:149984361 Tssr9289 1994 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 80 of 80
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory