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Mouse SNP Summary
Symbol
Name
ID 		Tssr9541
transcription start site region 9541
MGI:5937308

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Showing SNP(s) 1 - 84 of 84

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243119650
MGI SNP Detail		 Chr1:155616327 Cpgi888 within coordinates of
Lhx4 within coordinates of
Tssr9541 1928 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs33704830
MGI SNP Detail		 Chr1:155616384 Cpgi888 within coordinates of
Lhx4 within coordinates of
Tssr9541 1871 bp upstream
 SNP C/T C C C C T C C C T C C
rs222040459
MGI SNP Detail		 Chr1:155616430 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1825 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs234167330
MGI SNP Detail		 Chr1:155616492 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1763 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs33860090
MGI SNP Detail		 Chr1:155616522 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1733 bp upstream
 SNP C/T C C T C
rs219821395
MGI SNP Detail		 Chr1:155616558 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1697 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242571570
MGI SNP Detail		 Chr1:155616644 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1611 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264746082
MGI SNP Detail		 Chr1:155616648 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1607 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227191942
MGI SNP Detail		 Chr1:155616658 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1597 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G
rs33704829
MGI SNP Detail		 Chr1:155616675 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1580 bp upstream
 SNP C/G G C G
rs33704828
MGI SNP Detail		 Chr1:155616733 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1522 bp upstream
 SNP C/G C C C C G C
rs226591369
MGI SNP Detail		 Chr1:155616811 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1444 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs244369591
MGI SNP Detail		 Chr1:155616932 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1323 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs255203711
MGI SNP Detail		 Chr1:155616933 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1322 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs229064589
MGI SNP Detail		 Chr1:155616949 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1306 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs249064440
MGI SNP Detail		 Chr1:155616960 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1295 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T
rs219052218
MGI SNP Detail		 Chr1:155616979 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1276 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs233130065
MGI SNP Detail		 Chr1:155617048 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1207 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31401070
MGI SNP Detail		 Chr1:155617170 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 1085 bp upstream
 SNP C/T T T T T T C T T C T T
rs215988561
MGI SNP Detail		 Chr1:155617317 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 938 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs234114403
MGI SNP Detail		 Chr1:155617374 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 881 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252241348
MGI SNP Detail		 Chr1:155617426 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 829 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
rs6194410
MGI SNP Detail		 Chr1:155617458 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 797 bp upstream
 SNP A/T A A T A A
rs237458445
MGI SNP Detail		 Chr1:155617468 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 787 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs255805784
MGI SNP Detail		 Chr1:155617478 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 777 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227614942
MGI SNP Detail		 Chr1:155617482 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 773 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G
rs6194464
MGI SNP Detail		 Chr1:155617491 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 764 bp upstream
 SNP A/G A A G A A
rs6194543
MGI SNP Detail		 Chr1:155617538 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 717 bp upstream
 SNP G/T T T T T T T T T G G G T T T G T T T T T G T T T T G G T T G T T T T T G T T T T G G G G T G G G
rs6195585
MGI SNP Detail		 Chr1:155617746 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 509 bp upstream
 SNP A/G G G A G G
rs238092009
MGI SNP Detail		 Chr1:155617766 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr14367 within coordinates of
Tssr9541 489 bp upstream
 SNP C/G C C C C G C C C C C C G G G G C C C G C C G C C C C C C G G G C G C C C C C C G G G C C C G G G C G G G
rs255124608
MGI SNP Detail		 Chr1:155617836 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 419 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs45649451
MGI SNP Detail		 Chr1:155617875 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr14368 within coordinates of
Tssr9541 380 bp upstream
 SNP G G G
rs243836677
MGI SNP Detail		 Chr1:155617920 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 335 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264368391
MGI SNP Detail		 Chr1:155617955 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 300 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs233984726
MGI SNP Detail		 Chr1:155617979 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 276 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247239339
MGI SNP Detail		 Chr1:155618050 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 205 bp upstream
 SNP C/T C C C T C C C C C C T T T T C C C C C C C C C C C C C T T C C C C C C C C C T T C C C T T C C T C
rs215954533
MGI SNP Detail		 Chr1:155618099 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 156 bp upstream
 SNP A/G G G G A G G G G G G A A A A G G G G G G G G G G G G G G A A G G G G G G G G G A A G G G A A G G A G
rs227394764
MGI SNP Detail		 Chr1:155618222 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 33 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs245821834
MGI SNP Detail		 Chr1:155618253 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 2 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs214404002
MGI SNP Detail		 Chr1:155618289 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 28 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235618904
MGI SNP Detail		 Chr1:155618326 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 65 bp downstream
 SNP C/T T T T T T C T T T T T T C C C C T T T T T T T T T T T T T T C C T T T T T T T T T C C T T T C C T T C T C
rs261081938
MGI SNP Detail		 Chr1:155618332 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 71 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs219618952
MGI SNP Detail		 Chr1:155618333 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 72 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs242502517
MGI SNP Detail		 Chr1:155618351 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 90 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs252268953
MGI SNP Detail		 Chr1:155618371 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 110 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221114019
MGI SNP Detail		 Chr1:155618396 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 135 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238055300
MGI SNP Detail		 Chr1:155618607 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 346 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249410757
MGI SNP Detail		 Chr1:155618611 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 350 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220746261
MGI SNP Detail		 Chr1:155618639 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 378 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs240909311
MGI SNP Detail		 Chr1:155618662 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 401 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs578794017
MGI SNP Detail		 Chr1:155618671 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 410 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs266096509
MGI SNP Detail		 Chr1:155618718 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 457 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs46961459
MGI SNP Detail		 Chr1:155618728 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 467 bp downstream
 SNP G G G
rs30994138
MGI SNP Detail		 Chr1:155618762 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 501 bp downstream
 SNP C/G G C G
rs226582834
MGI SNP Detail		 Chr1:155618785 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 524 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs245792211
MGI SNP Detail		 Chr1:155618804 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 543 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G
rs262412466
MGI SNP Detail		 Chr1:155618840 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 579 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs31996356
MGI SNP Detail		 Chr1:155618891 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 630 bp downstream
 SNP G/T T T T G T G
rs249286353
MGI SNP Detail		 Chr1:155618963 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 702 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs219364574
MGI SNP Detail		 Chr1:155619028 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 767 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234619044
MGI SNP Detail		 Chr1:155619094 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 833 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs33704827
MGI SNP Detail		 Chr1:155619106 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 845 bp downstream
 SNP G/T T G
rs215538609
MGI SNP Detail		 Chr1:155619118 Cpgi888 within coordinates of
Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 857 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232477369
MGI SNP Detail		 Chr1:155619161 Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 900 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T C T
rs261800684
MGI SNP Detail		 Chr1:155619178 Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 917 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221082768
MGI SNP Detail		 Chr1:155619201 Lhx4 within coordinates of
Rr28763 within coordinates of
Tssr9541 940 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs235943332
MGI SNP Detail		 Chr1:155619232 Lhx4 within coordinates of
Tssr9541 971 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs260702375
MGI SNP Detail		 Chr1:155619234 Lhx4 within coordinates of
Tssr9541 973 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G A G
rs225965097
MGI SNP Detail		 Chr1:155619241 Lhx4 within coordinates of
Tssr9541 980 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs241154627
MGI SNP Detail		 Chr1:155619262 Lhx4 within coordinates of
Tssr9541 1001 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259012082
MGI SNP Detail		 Chr1:155619272 Lhx4 within coordinates of
Tssr9541 1011 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G A G G G A G G G G G G G G G G G G G G A G G A G
rs220221964
MGI SNP Detail		 Chr1:155619296 Lhx4 within coordinates of
Tssr9541 1035 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs238840612
MGI SNP Detail		 Chr1:155619473 Lhx4 within coordinates of
Tssr9541 1212 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A C A A A C A A A A A A A A A A A A A A A A A C A
rs265084693
MGI SNP Detail		 Chr1:155619613 Lhx4 within coordinates of
Tssr9541 1352 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228888218
MGI SNP Detail		 Chr1:155619737 Lhx4 within coordinates of
Tssr9541 1476 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252791439
MGI SNP Detail		 Chr1:155619777 Lhx4 within coordinates of
Tssr9541 1516 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264508436
MGI SNP Detail		 Chr1:155619861 Lhx4 within coordinates of
Tssr9541 1600 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228693048
MGI SNP Detail		 Chr1:155619910 Lhx4 within coordinates of
Tssr9541 1649 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs33704826
MGI SNP Detail		 Chr1:155619974 Lhx4 within coordinates of
Tssr9541 1713 bp downstream
 SNP A/C C A
rs215454026
MGI SNP Detail		 Chr1:155620000 Lhx4 within coordinates of
Tssr9541 1739 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs232441948
MGI SNP Detail		 Chr1:155620047 Lhx4 within coordinates of
Tssr9541 1786 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A
rs251086639
MGI SNP Detail		 Chr1:155620116 Lhx4 within coordinates of
Tssr9541 1855 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs32732247
MGI SNP Detail		 Chr1:155620124 Lhx4 within coordinates of
Tssr9541 1863 bp downstream
 SNP A/G A A G A
rs234307952
MGI SNP Detail		 Chr1:155620158 Lhx4 within coordinates of
Tssr9541 1897 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
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Showing SNP(s) 1 - 84 of 84
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory