About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Tssr11178
transcription start site region 11178
MGI:5938945

<< first < prev1 next > last >>
Showing SNP(s) 1 - 56 of 56

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254011969
MGI SNP Detail		 Chr1:30987251 Ptp4a1 within coordinates of
Tssr11178 1971 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583266373
MGI SNP Detail		 Chr1:30987286 Ptp4a1 within coordinates of
Tssr11178 1936 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219274789
MGI SNP Detail		 Chr1:30987327 Ptp4a1 within coordinates of
Tssr11178 1895 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs246190152
MGI SNP Detail		 Chr1:30987367 Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 1855 bp downstream
 SNP A/T T T T T A A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T A
rs232417149
MGI SNP Detail		 Chr1:30987408 Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 1814 bp downstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs261184504
MGI SNP Detail		 Chr1:30987412 Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 1810 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T
rs213259336
MGI SNP Detail		 Chr1:30987448 Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 1774 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs586345512
MGI SNP Detail		 Chr1:30987648 Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 1574 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236809550
MGI SNP Detail		 Chr1:30987732 Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 1490 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs259956508
MGI SNP Detail		 Chr1:30987792 Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 1430 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223227119
MGI SNP Detail		 Chr1:30988024 Cpgi100 within coordinates of
Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 1198 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T A T T T T T T T T T T T
rs253444102
MGI SNP Detail		 Chr1:30988067 Cpgi100 within coordinates of
Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 1155 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G C G G G G
rs219448194
MGI SNP Detail		 Chr1:30988081 Cpgi100 within coordinates of
Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 1141 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T C C T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs244010289
MGI SNP Detail		 Chr1:30988198 Cpgi100 within coordinates of
Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 1024 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs240444149
MGI SNP Detail		 Chr1:30988231 Cpgi100 within coordinates of
Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 991 bp downstream
 SNP C/G C G
rs228748543
MGI SNP Detail		 Chr1:30988243 Cpgi100 within coordinates of
Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 979 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs250210301
MGI SNP Detail		 Chr1:30988247 Cpgi100 within coordinates of
Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 975 bp downstream
 SNP C/G G G C G C G G G G C C C C C C C C C G C C G C C C C G C C G C G C C C C G C G C G C C G C C G G C C G
rs264465727
MGI SNP Detail		 Chr1:30988250 Cpgi100 within coordinates of
Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 972 bp downstream
 SNP A/G G G A G A G G G G A A A A A A A A A G A A G A A A A G A A G A G A A A A G A G A G A A G A A G G A A G
rs580679441
MGI SNP Detail		 Chr1:30988284 Cpgi100 within coordinates of
Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 938 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A C A A
rs585381788
MGI SNP Detail		 Chr1:30988291 Cpgi100 within coordinates of
Ptp4a1 within coordinates of
Rr408767 within coordinates of
Tssr11178 931 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C
rs226939964
MGI SNP Detail		 Chr1:30988549 Cpgi100 within coordinates of
Ptp4a1 within coordinates of
Rr408768 within coordinates of
Tssr11178 673 bp downstream
 SNP A/G G G A G A A G A G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G A G G A G G G A A G A
rs246134633
MGI SNP Detail		 Chr1:30988552 Cpgi100 within coordinates of
Ptp4a1 within coordinates of
Rr408768 within coordinates of
Tssr11178 670 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs213848096
MGI SNP Detail		 Chr1:30988888 Cpgi100 within coordinates of
Rr408768 within coordinates of
Tssr11178 334 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs226338966
MGI SNP Detail		 Chr1:30988999 Cpgi100 within coordinates of
Gm53209 within coordinates of
Rr408768 within coordinates of
Tssr11175 within coordinates of
Tssr11178 223 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs249385981
MGI SNP Detail		 Chr1:30989030 Cpgi100 within coordinates of
Gm53209 within coordinates of
Rr408768 within coordinates of
Tssr11178 192 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213672569
MGI SNP Detail		 Chr1:30989196 Cpgi100 within coordinates of
Gm53209 within coordinates of
Rr408770 within coordinates of
Tssr11177 within coordinates of
Tssr11178 26 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs239887341
MGI SNP Detail		 Chr1:30989198 Cpgi100 within coordinates of
Gm53209 within coordinates of
Rr408770 within coordinates of
Tssr11177 within coordinates of
Tssr11178 24 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C G C C C C
rs263596911
MGI SNP Detail		 Chr1:30989337 Gm53209 within coordinates of
Rr408770 within coordinates of
Tssr11178 102 bp upstream
Tssr6139 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217095000
MGI SNP Detail		 Chr1:30989342 Gm53209 within coordinates of
Rr408770 within coordinates of
Tssr11178 107 bp upstream
Tssr6139 within coordinates of
 SNP C/G/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C G C C C C
rs233522575
MGI SNP Detail		 Chr1:30989390 Gm53209 within coordinates of
Rr408770 within coordinates of
Tssr11178 155 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253388863
MGI SNP Detail		 Chr1:30989430 Gm53209 within coordinates of
Rr408770 within coordinates of
Tssr11178 195 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G G T T T T G T T T T T T G T T T T T T T G T G T T
rs219391514
MGI SNP Detail		 Chr1:30989444 Gm53209 within coordinates of
Rr408770 within coordinates of
Tssr11178 209 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T
rs246686593
MGI SNP Detail		 Chr1:30989497 Gm53209 within coordinates of
Rr408770 within coordinates of
Tssr11178 262 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs255395275
MGI SNP Detail		 Chr1:30989679 Gm53209 within coordinates of
Rr408770 within coordinates of
Tssr11178 444 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs220987605
MGI SNP Detail		 Chr1:30989843 Gm53209 within coordinates of
Rr408770 within coordinates of
Tssr11178 608 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247419987
MGI SNP Detail		 Chr1:30989844 Gm53209 within coordinates of
Rr408770 within coordinates of
Tssr11178 609 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A A G G G G A G G G G G G A G G G G G G G A G A G G
rs259887398
MGI SNP Detail		 Chr1:30989958 Gm53209 within coordinates of
Tssr11178 723 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220810014
MGI SNP Detail		 Chr1:30989959 Gm53209 within coordinates of
Tssr11178 724 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs240138328
MGI SNP Detail		 Chr1:30990017 Gm53209 within coordinates of
Tssr11178 782 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255564142
MGI SNP Detail		 Chr1:30990132 Gm53209 within coordinates of
Tssr11178 897 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs231089307
MGI SNP Detail		 Chr1:30990187 Gm53209 within coordinates of
Tssr11178 952 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G A A A A G A A A A A A G A A A A A A A G A G A A
rs253098612
MGI SNP Detail		 Chr1:30990407 Gm53209 within coordinates of
Tssr11178 1172 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs262087881
MGI SNP Detail		 Chr1:30990566 Tssr11178 1331 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234423353
MGI SNP Detail		 Chr1:30990612 Tssr11178 1377 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs255063410
MGI SNP Detail		 Chr1:30990642 Tssr11178 1407 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs215556166
MGI SNP Detail		 Chr1:30990692 Tssr11178 1457 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233428089
MGI SNP Detail		 Chr1:30990710 Tssr11178 1475 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs246982346
MGI SNP Detail		 Chr1:30990845 Tssr11178 1610 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G G T T T T G T T T T T T G T T T T T T T G T G T T
rs213405919
MGI SNP Detail		 Chr1:30990930 Tssr11178 1695 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236776139
MGI SNP Detail		 Chr1:30990961 Tssr11178 1726 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260744428
MGI SNP Detail		 Chr1:30991025 Tssr11178 1790 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs221311643
MGI SNP Detail		 Chr1:30991047 Tssr11178 1812 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs241973502
MGI SNP Detail		 Chr1:30991124 Tssr11178 1889 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs253143148
MGI SNP Detail		 Chr1:30991181 Tssr11178 1946 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs220752607
MGI SNP Detail		 Chr1:30991190 Tssr11178 1955 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs240071490
MGI SNP Detail		 Chr1:30991229 Tssr11178 1994 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
<< first < prev1 next > last >>
Showing SNP(s) 1 - 56 of 56
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
Building initial tooltip...