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Mouse SNP Summary
Symbol
Name
ID 		Tssr11314
transcription start site region 11314
MGI:5939081

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212331405
MGI SNP Detail		 Chr1:37756964 Cracdl within coordinates of
Tssr11314 1899 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs235715598
MGI SNP Detail		 Chr1:37757004 Cracdl within coordinates of
Tssr11314 1859 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs32947359
MGI SNP Detail		 Chr1:37757008 Cracdl within coordinates of
Tssr11314 1855 bp downstream
 SNP A/T T T A T T T T A T A T T A T
rs226920031
MGI SNP Detail		 Chr1:37757037 Cracdl within coordinates of
Tssr11314 1826 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32947362
MGI SNP Detail		 Chr1:37757064 Cracdl within coordinates of
Tssr11314 1799 bp downstream
 SNP A/T A A T A A A A T A A T A A T A
rs252022999
MGI SNP Detail		 Chr1:37757073 Cracdl within coordinates of
Tssr11314 1790 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C A A C C C C C C A C C C A C C C C C C C C
rs219331786
MGI SNP Detail		 Chr1:37757092 Cracdl within coordinates of
Tssr11314 1771 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238323420
MGI SNP Detail		 Chr1:37757103 Cracdl within coordinates of
Tssr11314 1760 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253905480
MGI SNP Detail		 Chr1:37757137 Cracdl within coordinates of
Tssr11314 1726 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs579984404
MGI SNP Detail		 Chr1:37757174 Cracdl within coordinates of
Tssr11314 1689 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs229073045
MGI SNP Detail		 Chr1:37757230 Cracdl within coordinates of
Tssr11314 1633 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32652698
MGI SNP Detail		 Chr1:37757272 Cracdl within coordinates of
Tssr11314 1591 bp downstream
 SNP A/C A A A C
rs266066896
MGI SNP Detail		 Chr1:37757380 Cracdl within coordinates of
Tssr11314 1483 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231462636
MGI SNP Detail		 Chr1:37757463 Cracdl within coordinates of
Tssr11314 1400 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs246928050
MGI SNP Detail		 Chr1:37757466 Cracdl within coordinates of
Tssr11314 1397 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs257210315
MGI SNP Detail		 Chr1:37757495 Cracdl within coordinates of
Tssr11314 1368 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A T T A A A A A A T A A A T A A A A A A A A
rs226292412
MGI SNP Detail		 Chr1:37757497 Cracdl within coordinates of
Tssr11314 1366 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246067431
MGI SNP Detail		 Chr1:37757503 Cracdl within coordinates of
Tssr11314 1360 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs212447115
MGI SNP Detail		 Chr1:37757522 Cracdl within coordinates of
Tssr11314 1341 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G T T G G G G G G T G G G T G G G G G G G
rs237443118
MGI SNP Detail		 Chr1:37757547 Cracdl within coordinates of
Tssr11314 1316 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254193692
MGI SNP Detail		 Chr1:37757563 Cracdl within coordinates of
Tssr11314 1300 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A A G G G G G G A G G G A G G G A G G G G
rs219267803
MGI SNP Detail		 Chr1:37757632 Cracdl within coordinates of
Tssr11314 1231 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C A A C C C C C C A C C C A C C C C C C C C
rs238075442
MGI SNP Detail		 Chr1:37757634 Cracdl within coordinates of
Tssr11314 1229 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31982110
MGI SNP Detail		 Chr1:37757662 Cracdl within coordinates of
Tssr11314 1201 bp downstream
 SNP C/T T T T T C
rs219423612
MGI SNP Detail		 Chr1:37757665 Cracdl within coordinates of
Tssr11314 1198 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32551642
MGI SNP Detail		 Chr1:37757845 Cracdl within coordinates of
Tssr11314 1018 bp downstream
 SNP A/C C C C A
rs248145940
MGI SNP Detail		 Chr1:37757846 Cracdl within coordinates of
Tssr11314 1017 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30747708
MGI SNP Detail		 Chr1:37757888 Cracdl within coordinates of
Tssr11314 975 bp downstream
 SNP G/T T T T G
rs582791054
MGI SNP Detail		 Chr1:37757899 Cracdl within coordinates of
Tssr11314 964 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs586676523
MGI SNP Detail		 Chr1:37757999 Cracdl within coordinates of
Tssr11314 864 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs581558696
MGI SNP Detail		 Chr1:37758021 Cracdl within coordinates of
Rr29331 within coordinates of
Tssr11314 842 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs249943905
MGI SNP Detail		 Chr1:37758096 Cracdl within coordinates of
Rr29331 within coordinates of
Tssr11314 767 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs264375866
MGI SNP Detail		 Chr1:37758259 Cpgi166 within coordinates of
Cracdl within coordinates of
Rr29331 within coordinates of
Tssr11314 604 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A C A A A A C C A A A A A A C A A A C A A A A A A A
rs257368234
MGI SNP Detail		 Chr1:37758386 Cpgi166 within coordinates of
Cracdl within coordinates of
Rr29331 within coordinates of
Tssr11314 477 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A A G G G G G G A G G G A G G G G G G G G
rs226247112
MGI SNP Detail		 Chr1:37758464 Cpgi166 within coordinates of
Cracdl within coordinates of
Rr29331 within coordinates of
Tssr11314 399 bp downstream
 SNP C/T T T T T C T T T T C T T T T T T T T T T C T C C C T C C T T T C C T T T T T T C T T T C T T T C T T T T
rs243215920
MGI SNP Detail		 Chr1:37758546 Cpgi166 within coordinates of
Cracdl within coordinates of
Rr29331 within coordinates of
Tssr11314 317 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264740755
MGI SNP Detail		 Chr1:37758740 Cpgi166 within coordinates of
Cracdl within coordinates of
Rr29331 within coordinates of
Tssr11314 123 bp downstream
 SNP C/G C C C C G C C C C G C C C C C C C C C G C G G C G G C C C G C C C C C C G C C C G C C C G C C C C
rs229322362
MGI SNP Detail		 Chr1:37758779 Cpgi166 within coordinates of
Cracdl within coordinates of
Rr29331 within coordinates of
Tssr11314 84 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs259457226
MGI SNP Detail		 Chr1:37758828 Cpgi166 within coordinates of
Cracdl within coordinates of
Rr29331 within coordinates of
Tssr11314 35 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs585181570
MGI SNP Detail		 Chr1:37758902 Cpgi166 within coordinates of
Cracdl within coordinates of
Rr29331 within coordinates of
Tssr11314 within coordinates of
 SNP A/G A A G A A A A A A A A A G A G G A G A A A A A G A A G A G A A A
rs219582739
MGI SNP Detail		 Chr1:37759045 Cpgi166 within coordinates of
Rr29331 within coordinates of
Tssr11314 65 bp upstream
 SNP A/G G G G A G G G G A G G G G G G G G G A G G A G A G G G G G G G G G G G G G G G G G G G G G G G G G
rs233129060
MGI SNP Detail		 Chr1:37759093 Cpgi166 within coordinates of
Rr29331 within coordinates of
Tssr11314 113 bp upstream
 SNP C/T T T C T T T T C T T T T T T T T T C T C C C T C C T T T T C C T T T T T T C T T T C T T T C T T T T
rs246132735
MGI SNP Detail		 Chr1:37759094 Cpgi166 within coordinates of
Rr29331 within coordinates of
Tssr11314 114 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213858190
MGI SNP Detail		 Chr1:37759102 Cpgi166 within coordinates of
Rr29331 within coordinates of
Tssr11314 122 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs232157564
MGI SNP Detail		 Chr1:37759159 Cpgi166 within coordinates of
Rr29331 within coordinates of
Tssr11314 179 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs255581758
MGI SNP Detail		 Chr1:37759196 Cpgi166 within coordinates of
Rr29331 within coordinates of
Tssr11314 216 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221005932
MGI SNP Detail		 Chr1:37759209 Cpgi166 within coordinates of
Rr29331 within coordinates of
Tssr11314 229 bp upstream
 SNP C/G G G G C G G G G C G G G G G G G G G G C G G C C G C G G G G G G G G G G G G G G G G G G G G G C G G G G
rs239444425
MGI SNP Detail		 Chr1:37759333 Cpgi166 within coordinates of
Rr29331 within coordinates of
Tssr11314 353 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264223890
MGI SNP Detail		 Chr1:37759703 Rr29331 within coordinates of
Tssr11314 723 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32647112
MGI SNP Detail		 Chr1:37759771 Rr29331 within coordinates of
Tssr11314 791 bp upstream
 SNP G/T G G G T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31762033
MGI SNP Detail		 Chr1:37759823 Tssr11314 843 bp upstream
 SNP A/G G G G A
rs257281395
MGI SNP Detail		 Chr1:37759842 Tssr11314 862 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220078697
MGI SNP Detail		 Chr1:37759889 Tssr11314 909 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs31320429
MGI SNP Detail		 Chr1:37760023 Tssr11314 1043 bp upstream
 SNP A/G A A A A G
rs261787803
MGI SNP Detail		 Chr1:37760135 Tssr11314 1155 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs233709300
MGI SNP Detail		 Chr1:37760315 Tssr11314 1335 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G G A A A A A A G A A A G A A A A A A A A
rs247925546
MGI SNP Detail		 Chr1:37760318 Tssr11314 1338 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs266254272
MGI SNP Detail		 Chr1:37760346 Tssr11314 1366 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs227083375
MGI SNP Detail		 Chr1:37760464 Tssr11314 1484 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs31336951
MGI SNP Detail		 Chr1:37760505 Tssr11314 1525 bp upstream
 SNP A/C C C C C A
rs213779932
MGI SNP Detail		 Chr1:37760559 Tssr11314 1579 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226280578
MGI SNP Detail		 Chr1:37760618 Tssr11314 1638 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T T C C C C C C T C C C T C C C C C C C
rs253020621
MGI SNP Detail		 Chr1:37760663 Tssr11314 1683 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212891210
MGI SNP Detail		 Chr1:37760667 Tssr11314 1687 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T C C T T T T T T C T T T C T T T C T T T T
rs242231725
MGI SNP Detail		 Chr1:37760676 Tssr11314 1696 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G G A A A A A A G A A A G A A A G A A A A
rs260864991
MGI SNP Detail		 Chr1:37760719 Tssr11314 1739 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234614231
MGI SNP Detail		 Chr1:37760911 Tssr11314 1931 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C A A C C C C C C A C C C A C C C C C C C C
rs251128288
MGI SNP Detail		 Chr1:37760923 Tssr11314 1943 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220034432
MGI SNP Detail		 Chr1:37760924 Tssr11314 1944 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236944469
MGI SNP Detail		 Chr1:37760946 Tssr11314 1966 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C G G C C C C C C G C C C G C C C G C C C C
rs261393928
MGI SNP Detail		 Chr1:37760952 Tssr11314 1972 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225428556
MGI SNP Detail		 Chr1:37760958 Tssr11314 1978 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G G A A A A A A G A A A G A A A A A A A A
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Showing SNP(s) 1 - 72 of 72
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory