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Mouse SNP Summary
Symbol
Name
ID 		Tssr11749
transcription start site region 11749
MGI:5939516

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Showing SNP(s) 1 - 36 of 36

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247164683
MGI SNP Detail		 Chr1:57008663 Satb2 within coordinates of
Tssr11749 1809 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247499544
MGI SNP Detail		 Chr1:57008831 Cpgi267 within coordinates of
Satb2 within coordinates of
Tssr11749 1641 bp downstream
 SNP C/G C G
rs227384918
MGI SNP Detail		 Chr1:57009240 Satb2 within coordinates of
Tssr11749 1232 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256936436
MGI SNP Detail		 Chr1:57009274 Satb2 within coordinates of
Tssr11749 1198 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs215089900
MGI SNP Detail		 Chr1:57009284 Satb2 within coordinates of
Tssr11749 1188 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs238377649
MGI SNP Detail		 Chr1:57009417 Satb2 within coordinates of
Tssr11749 1055 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250159765
MGI SNP Detail		 Chr1:57009421 Satb2 within coordinates of
Tssr11749 1051 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs212485756
MGI SNP Detail		 Chr1:57009442 Satb2 within coordinates of
Tssr11749 1030 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs236753550
MGI SNP Detail		 Chr1:57009446 Satb2 within coordinates of
Tssr11749 1026 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254525309
MGI SNP Detail		 Chr1:57009463 Satb2 within coordinates of
Tssr11749 1009 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221920717
MGI SNP Detail		 Chr1:57009487 Satb2 within coordinates of
Tssr11749 985 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234172872
MGI SNP Detail		 Chr1:57009551 Satb2 within coordinates of
Tssr11749 921 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T C T
rs262525594
MGI SNP Detail		 Chr1:57009567 Satb2 within coordinates of
Tssr11749 905 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs223250635
MGI SNP Detail		 Chr1:57009669 Satb2 within coordinates of
Tssr11749 803 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C A A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs245868865
MGI SNP Detail		 Chr1:57009777 Satb2 within coordinates of
Tssr11749 695 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265745101
MGI SNP Detail		 Chr1:57009819 Satb2 within coordinates of
Tssr11749 653 bp downstream
 SNP A/G G A
rs217973441
MGI SNP Detail		 Chr1:57009968 Satb2 within coordinates of
Tssr11749 504 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241514829
MGI SNP Detail		 Chr1:57010030 Cpgi268 within coordinates of
Satb2 within coordinates of
Tssr11749 442 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs258633960
MGI SNP Detail		 Chr1:57010066 Cpgi268 within coordinates of
Satb2 within coordinates of
Tssr11749 406 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227240241
MGI SNP Detail		 Chr1:57010127 Cpgi268 within coordinates of
Satb2 within coordinates of
Tssr11749 345 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs244924931
MGI SNP Detail		 Chr1:57010147 Cpgi268 within coordinates of
Satb2 within coordinates of
Tssr11749 325 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265212070
MGI SNP Detail		 Chr1:57010191 Cpgi268 within coordinates of
Satb2 within coordinates of
Tssr11749 281 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs229579797
MGI SNP Detail		 Chr1:57010589 Satb2 within coordinates of
Tssr11749 101 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254582266
MGI SNP Detail		 Chr1:57010744 9130024F11Rik within coordinates of
Cpgi269 within coordinates of
Satb2 within coordinates of
Tssr11749 256 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212323889
MGI SNP Detail		 Chr1:57011206 9130024F11Rik within coordinates of
Cpgi269 within coordinates of
Satb2 within coordinates of
Tssr11749 718 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229581854
MGI SNP Detail		 Chr1:57011223 9130024F11Rik within coordinates of
Cpgi269 within coordinates of
Satb2 within coordinates of
Tssr11749 735 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs248344756
MGI SNP Detail		 Chr1:57011292 9130024F11Rik within coordinates of
Cpgi269 within coordinates of
Satb2 within coordinates of
Tssr11749 804 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G A A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs216000602
MGI SNP Detail		 Chr1:57011393 9130024F11Rik within coordinates of
Cpgi269 within coordinates of
Satb2 within coordinates of
Tssr11749 905 bp upstream
Tssr11756 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240006671
MGI SNP Detail		 Chr1:57011517 9130024F11Rik within coordinates of
Cpgi269 within coordinates of
Satb2 within coordinates of
Tssr11749 1029 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T
rs257940579
MGI SNP Detail		 Chr1:57011760 9130024F11Rik within coordinates of
Cpgi269 within coordinates of
Satb2 within coordinates of
Tssr11749 1272 bp upstream
 SNP C/G C C C C G C G C G C C C C C C C C C C C C C C C C C C C G C G C G C C C C G C C C C G G G C C C G G
rs232335849
MGI SNP Detail		 Chr1:57011793 9130024F11Rik within coordinates of
Cpgi269 within coordinates of
Satb2 within coordinates of
Tssr11749 1305 bp upstream
 SNP A/G G A
rs214452928
MGI SNP Detail		 Chr1:57011819 9130024F11Rik within coordinates of
Cpgi269 within coordinates of
Satb2 within coordinates of
Tssr11749 1331 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs235575216
MGI SNP Detail		 Chr1:57012027 9130024F11Rik within coordinates of
Cpgi269 within coordinates of
Satb2 within coordinates of
Tssr11749 1539 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs261470148
MGI SNP Detail		 Chr1:57012098 9130024F11Rik within coordinates of
Cpgi269 within coordinates of
Satb2 within coordinates of
Tssr11749 1610 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs245248983
MGI SNP Detail		 Chr1:57012244 9130024F11Rik within coordinates of
Cpgi269 within coordinates of
Satb2 within coordinates of
Tssr11749 1756 bp upstream
 SNP G/T T G
rs241551804
MGI SNP Detail		 Chr1:57012365 9130024F11Rik within coordinates of
Cpgi269 within coordinates of
Satb2 within coordinates of
Tssr11749 1877 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
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Showing SNP(s) 1 - 36 of 36
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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