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Mouse SNP Summary
Symbol
Name
ID 		Tssr12435
transcription start site region 12435
MGI:5940202

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259417555
MGI SNP Detail		 Chr1:79415771 Scg2 within coordinates of
Tssr12435 1949 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs52383191
MGI SNP Detail		 Chr1:79415803 Scg2 within coordinates of
Tssr12435 1917 bp downstream
 SNP A A A A A A
rs242590163
MGI SNP Detail		 Chr1:79415810 Scg2 within coordinates of
Tssr12435 1910 bp downstream
 SNP A/C A A A A A A A A A A A A A A A C C A C A A A A A A A C A A A A A C A A A A A A C A A A A A A A A A A A
rs215439834
MGI SNP Detail		 Chr1:79415862 Scg2 within coordinates of
Tssr12435 1858 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs230195008
MGI SNP Detail		 Chr1:79415926 Scg2 within coordinates of
Tssr12435 1794 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs258467977
MGI SNP Detail		 Chr1:79415933 Scg2 within coordinates of
Tssr12435 1787 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs215867996
MGI SNP Detail		 Chr1:79415956 Scg2 within coordinates of
Tssr12435 1764 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T G T
rs236441461
MGI SNP Detail		 Chr1:79415973 Scg2 within coordinates of
Tssr12435 1747 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T C T
rs254414018
MGI SNP Detail		 Chr1:79416049 Scg2 within coordinates of
Tssr12435 1671 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586540760
MGI SNP Detail		 Chr1:79416106 Scg2 within coordinates of
Tssr12435 1614 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30156251
MGI SNP Detail		 Chr1:79416146 Scg2 within coordinates of
Tssr12435 1574 bp downstream
 SNP C/G C C C C C C C C C G C
rs229849906
MGI SNP Detail		 Chr1:79416153 Scg2 within coordinates of
Tssr12435 1567 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs257750882
MGI SNP Detail		 Chr1:79416154 Scg2 within coordinates of
Tssr12435 1566 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs30156250
MGI SNP Detail		 Chr1:79416177 Scg2 within coordinates of
Tssr12435 1543 bp downstream
 SNP C/T T T T T T T T C T T C T
rs246160293
MGI SNP Detail		 Chr1:79416189 Scg2 within coordinates of
Tssr12435 1531 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs45842002
MGI SNP Detail		 Chr1:79416222 Scg2 within coordinates of
Tssr12435 1498 bp downstream
 SNP C/T T C C C T
rs222409440
MGI SNP Detail		 Chr1:79416295 Scg2 within coordinates of
Tssr12435 1425 bp downstream
 SNP A/G A A A A A A A A A A A A A A A G G A A A A A A A A A G A A A A A G A A A A A A G A A A A A A A A A A A
rs240492640
MGI SNP Detail		 Chr1:79416362 Scg2 within coordinates of
Tssr12435 1358 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs30156249
MGI SNP Detail		 Chr1:79416376 Scg2 within coordinates of
Tssr12435 1344 bp downstream
 SNP A/G G G G G G G G G G G G A
rs224825679
MGI SNP Detail		 Chr1:79416398 Scg2 within coordinates of
Tssr12435 1322 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs236205548
MGI SNP Detail		 Chr1:79416410 Rr29696 within coordinates of
Scg2 within coordinates of
Tssr12435 1310 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262935413
MGI SNP Detail		 Chr1:79416496 Rr29696 within coordinates of
Scg2 within coordinates of
Tssr12435 1224 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A G G A A A A A A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs30156248
MGI SNP Detail		 Chr1:79416590 Rr29696 within coordinates of
Scg2 within coordinates of
Tssr12435 1130 bp downstream
 SNP A/T A A T A T A T T T T T T A A
rs253364005
MGI SNP Detail		 Chr1:79416625 Rr29696 within coordinates of
Scg2 within coordinates of
Tssr12435 1095 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216353846
MGI SNP Detail		 Chr1:79416673 Rr29696 within coordinates of
Scg2 within coordinates of
Tssr12435 1047 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30156247
MGI SNP Detail		 Chr1:79416720 Rr29696 within coordinates of
Scg2 within coordinates of
Tssr12435 1000 bp downstream
 SNP A/G G G G G G G G G G A G
rs248103079
MGI SNP Detail		 Chr1:79417034 Scg2 within coordinates of
Tssr12435 686 bp downstream
 SNP A/G A A A A A A A A A A A A A A A G G A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs212906845
MGI SNP Detail		 Chr1:79417039 Scg2 within coordinates of
Tssr12435 681 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239261985
MGI SNP Detail		 Chr1:79417048 Scg2 within coordinates of
Tssr12435 672 bp downstream
 SNP C/T T C
rs262436305
MGI SNP Detail		 Chr1:79417182 Scg2 within coordinates of
Tssr12435 538 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49536828
MGI SNP Detail		 Chr1:79417185 Scg2 within coordinates of
Tssr12435 535 bp downstream
 SNP A/T A A A T
rs240844052
MGI SNP Detail		 Chr1:79417233 Rr29697 within coordinates of
Scg2 within coordinates of
Tssr12435 487 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258457092
MGI SNP Detail		 Chr1:79417266 Rr29697 within coordinates of
Scg2 within coordinates of
Tssr12435 454 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs222483508
MGI SNP Detail		 Chr1:79417374 Rr29697 within coordinates of
Scg2 within coordinates of
Tssr12435 346 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs234044898
MGI SNP Detail		 Chr1:79417471 Rr29697 within coordinates of
Scg2 within coordinates of
Tssr12435 249 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A G G A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs30156246
MGI SNP Detail		 Chr1:79417523 Rr29697 within coordinates of
Scg2 within coordinates of
Tssr12435 197 bp downstream
 SNP G/T G G G G G G G G G T G
rs217674299
MGI SNP Detail		 Chr1:79417526 Rr29697 within coordinates of
Scg2 within coordinates of
Tssr12435 194 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs241700822
MGI SNP Detail		 Chr1:79417775 Cpgi462 within coordinates of
Rr17631 within coordinates of
Rr29697 within coordinates of
Scg2 within coordinates of
Tssr12435 44 bp upstream
Tssr12437 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs8253478
MGI SNP Detail		 Chr1:79417832 Cpgi462 within coordinates of
Rr17631 within coordinates of
Rr29697 within coordinates of
Scg2 within coordinates of
Tssr12435 101 bp upstream
 SNP C/T T T T T T T T T T T C
rs8253477
MGI SNP Detail		 Chr1:79417923 Rr17631 within coordinates of
Rr29697 within coordinates of
Tssr12435 192 bp upstream
 SNP C/T C C C C C C C C C C T
rs586931622
MGI SNP Detail		 Chr1:79418269 Tssr12435 538 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs46543998
MGI SNP Detail		 Chr1:79418290 Tssr12435 559 bp upstream
 SNP G/T G T
rs30156245
MGI SNP Detail		 Chr1:79418323 Tssr12435 592 bp upstream
 SNP A/G G G A G A G A A A A A A G G
rs30156244
MGI SNP Detail		 Chr1:79418335 Tssr12435 604 bp upstream
 SNP G/T T T G T G T G G G G G G T T
rs229394308
MGI SNP Detail		 Chr1:79418364 Tssr12435 633 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs248136698
MGI SNP Detail		 Chr1:79418403 Tssr12435 672 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs256894059
MGI SNP Detail		 Chr1:79418405 Tssr12435 674 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30155363
MGI SNP Detail		 Chr1:79418414 Tssr12435 683 bp upstream
 SNP A/G G G G G G G G A G G A G
rs251528026
MGI SNP Detail		 Chr1:79418423 Tssr12435 692 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214149435
MGI SNP Detail		 Chr1:79418529 Tssr12435 798 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238634164
MGI SNP Detail		 Chr1:79418541 Tssr12435 810 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C A C
rs257119167
MGI SNP Detail		 Chr1:79418656 Tssr12435 925 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217198553
MGI SNP Detail		 Chr1:79418669 Tssr12435 938 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30155362
MGI SNP Detail		 Chr1:79418705 Tssr12435 974 bp upstream
 SNP C/T T T T C T C C T C C C C C C T C
rs248683303
MGI SNP Detail		 Chr1:79418712 Tssr12435 981 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30155361
MGI SNP Detail		 Chr1:79418727 Tssr12435 996 bp upstream
 SNP A/G G A G A G G G
rs238668176
MGI SNP Detail		 Chr1:79418772 Tssr12435 1041 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs256738026
MGI SNP Detail		 Chr1:79418818 Tssr12435 1087 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs222644297
MGI SNP Detail		 Chr1:79419056 Tssr12435 1325 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581512591
MGI SNP Detail		 Chr1:79419136 Tssr12435 1405 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584915494
MGI SNP Detail		 Chr1:79419160 Tssr12435 1429 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G A A G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs578282534
MGI SNP Detail		 Chr1:79419186 Tssr12435 1455 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs246815564
MGI SNP Detail		 Chr1:79419204 Tssr12435 1473 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A A A G A A G G G G G A G G G A G G G G G G G G G G G G G A G G G G
rs581781778
MGI SNP Detail		 Chr1:79419217 Tssr12435 1486 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs585703740
MGI SNP Detail		 Chr1:79419241 Tssr12435 1510 bp upstream
 SNP A/T A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs578664008
MGI SNP Detail		 Chr1:79419272 Tssr12435 1541 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582359796
MGI SNP Detail		 Chr1:79419354 Tssr12435 1623 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586078908
MGI SNP Detail		 Chr1:79419400 Tssr12435 1669 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583840595
MGI SNP Detail		 Chr1:79419410 Tssr12435 1679 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs585985832
MGI SNP Detail		 Chr1:79419442 Tssr12435 1711 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580568487
MGI SNP Detail		 Chr1:79419465 Tssr12435 1734 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs583131278
MGI SNP Detail		 Chr1:79419515 Tssr12435 1784 bp upstream
 SNP A/G G G G G G G G G G G G G G G A A G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs586749165
MGI SNP Detail		 Chr1:79419554 Tssr12435 1823 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C G G C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs581060612
MGI SNP Detail		 Chr1:79419595 Tssr12435 1864 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs583501353
MGI SNP Detail		 Chr1:79419597 Tssr12435 1866 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259111143
MGI SNP Detail		 Chr1:79419698 Tssr12435 1967 bp upstream
 SNP A/G G A
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Showing SNP(s) 1 - 76 of 76
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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