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Mouse SNP Summary
Symbol
Name
ID
Tssr12442
transcription start site region 12442
MGI:5940209

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235545175
MGI SNP Detail
Alliance Variant
Chr1:79647819 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1982 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs30158750
MGI SNP Detail
Alliance Variant
Chr1:79647872 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1929 bp downstream
SNP A/G A A A A A A A A A G A A G A
rs579859131
MGI SNP Detail
Alliance Variant
Chr1:79647881 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1920 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs211777459
MGI SNP Detail
Alliance Variant
Chr1:79647958 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1843 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230491572
MGI SNP Detail
Alliance Variant
Chr1:79647975 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1826 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs249491222
MGI SNP Detail
Alliance Variant
Chr1:79648118 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1683 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs222956866
MGI SNP Detail
Alliance Variant
Chr1:79648135 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1666 bp downstream
SNP A/G G G G G G G G G G G G G G G G G A A G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs245066987
MGI SNP Detail
Alliance Variant
Chr1:79648142 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1659 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs263312743
MGI SNP Detail
Alliance Variant
Chr1:79648156 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1645 bp downstream
SNP A/G A A A A A A A A A A A A A A A A G G A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs583628071
MGI SNP Detail
Alliance Variant
Chr1:79648166 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1635 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs587242392
MGI SNP Detail
Alliance Variant
Chr1:79648209 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1592 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs580382565
MGI SNP Detail
Alliance Variant
Chr1:79648218 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1583 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs225730069
MGI SNP Detail
Alliance Variant
Chr1:79648305 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1496 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs242779645
MGI SNP Detail
Alliance Variant
Chr1:79648306 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1495 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs256089106
MGI SNP Detail
Alliance Variant
Chr1:79648325 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1476 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs30158749
MGI SNP Detail
Alliance Variant
Chr1:79648340 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1461 bp downstream
SNP C/T C C C C C C C T C C T C T C C C C
rs239046533
MGI SNP Detail
Alliance Variant
Chr1:79648351 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1450 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs262870321
MGI SNP Detail
Alliance Variant
Chr1:79648410 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1391 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232407822
MGI SNP Detail
Alliance Variant
Chr1:79648432 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1369 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs30158748
MGI SNP Detail
Alliance Variant
Chr1:79648462 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1339 bp downstream
SNP C/T C C C C C C C T C C C
rs584021927
MGI SNP Detail
Alliance Variant
Chr1:79648463 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1338 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs587226747
MGI SNP Detail
Alliance Variant
Chr1:79648464 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1337 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T
rs253420367
MGI SNP Detail
Alliance Variant
Chr1:79648489 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1312 bp downstream
SNP C/T C C C C C C C C C C C C C C C C T T C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs51802192
MGI SNP Detail
Alliance Variant
Chr1:79648504 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1297 bp downstream
SNP C/T T T T T C C T T T T T T C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C T C T T C C T C C C
rs229549814
MGI SNP Detail
Alliance Variant
Chr1:79648505 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1296 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30158747
MGI SNP Detail
Alliance Variant
Chr1:79648576 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1225 bp downstream
SNP A/G G G G G G G G G A G G A G
rs211712706
MGI SNP Detail
Alliance Variant
Chr1:79648582 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1219 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230435309
MGI SNP Detail
Alliance Variant
Chr1:79648611 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Tssr12442 1190 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254910898
MGI SNP Detail
Alliance Variant
Chr1:79648885 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr413837 within coordinates of
Tssr12442 916 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs214512646
MGI SNP Detail
Alliance Variant
Chr1:79648890 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr413837 within coordinates of
Tssr12442 911 bp downstream
SNP A/C C C C C C C C C C C C C C C C C A A C A C C A C C C A C C C C A C C C C C C A C C C C C C C C C C C C
rs239754964
MGI SNP Detail
Alliance Variant
Chr1:79648907 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr413837 within coordinates of
Tssr12442 894 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs259317048
MGI SNP Detail
Alliance Variant
Chr1:79649006 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 795 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs222575931
MGI SNP Detail
Alliance Variant
Chr1:79649014 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 787 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236336620
MGI SNP Detail
Alliance Variant
Chr1:79649017 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 784 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249608203
MGI SNP Detail
Alliance Variant
Chr1:79649058 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 743 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218903191
MGI SNP Detail
Alliance Variant
Chr1:79649082 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 719 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs238975005
MGI SNP Detail
Alliance Variant
Chr1:79649096 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 705 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265319522
MGI SNP Detail
Alliance Variant
Chr1:79649097 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 704 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs224364372
MGI SNP Detail
Alliance Variant
Chr1:79649107 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 694 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30158746
MGI SNP Detail
Alliance Variant
Chr1:79649134 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 667 bp downstream
SNP C/T T T T T T T T T C T T C T
rs264149441
MGI SNP Detail
Alliance Variant
Chr1:79649135 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 666 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs229492202
MGI SNP Detail
Alliance Variant
Chr1:79649209 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 592 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs242634383
MGI SNP Detail
Alliance Variant
Chr1:79649233 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 568 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs254976392
MGI SNP Detail
Alliance Variant
Chr1:79649278 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Cpgi464 within coordinates of
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 523 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs223926668
MGI SNP Detail
Alliance Variant
Chr1:79649295 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Cpgi464 within coordinates of
Rr396122 within coordinates of
Rr413837 within coordinates of
Tssr12442 506 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A A
rs250371287
MGI SNP Detail
Alliance Variant
Chr1:79649310 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Cpgi464 within coordinates of
Rr413837 within coordinates of
Tssr12442 491 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T A A
rs30158745
MGI SNP Detail
Alliance Variant
Chr1:79649406 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Cpgi464 within coordinates of
Rr413837 within coordinates of
Tssr12442 395 bp downstream
SNP C/G C C C C C C C C G C C G C
rs237638382
MGI SNP Detail
Alliance Variant
Chr1:79649455 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Cpgi464 within coordinates of
Rr413837 within coordinates of
Tssr12442 346 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs258000305
MGI SNP Detail
Alliance Variant
Chr1:79649469 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Cpgi464 within coordinates of
Rr413837 within coordinates of
Tssr12442 332 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216543608
MGI SNP Detail
Alliance Variant
Chr1:79649490 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Cpgi464 within coordinates of
Rr413837 within coordinates of
Tssr12442 311 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236273855
MGI SNP Detail
Alliance Variant
Chr1:79649528 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Cpgi464 within coordinates of
Rr413837 within coordinates of
Tssr12442 273 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30158744
MGI SNP Detail
Alliance Variant
Chr1:79649532 Ap1s3 Intron
Ap1s3 Noncoding-Transcript-Variant
Cpgi464 within coordinates of
Rr413837 within coordinates of
Tssr12442 269 bp downstream
SNP A/C A C A A A C A A A C A A A
rs30158003
MGI SNP Detail
Alliance Variant
Chr1:79649583 Ap1s3 mRNA-UTR
Ap1s3 Noncoding-Transcript-Variant
Cpgi464 within coordinates of
Rr413837 within coordinates of
Tssr12442 218 bp downstream
SNP C/T C C C T C C C T C C C T C C C
rs238090247
MGI SNP Detail
Alliance Variant
Chr1:79649595 Ap1s3 mRNA-UTR
Ap1s3 Noncoding-Transcript-Variant
Cpgi464 within coordinates of
Rr413837 within coordinates of
Tssr12442 206 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257917899
MGI SNP Detail
Alliance Variant
Chr1:79649669 Ap1s3 mRNA-UTR
Ap1s3 Noncoding-Transcript-Variant
Cpgi464 within coordinates of
Rr413837 within coordinates of
Tssr12442 132 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs30158002
MGI SNP Detail
Alliance Variant
Chr1:79649691 Ap1s3 Noncoding-Transcript-Variant
Cpgi464 within coordinates of
Rr413838 within coordinates of
Tssr12441 within coordinates of
Tssr12442 110 bp downstream
SNP C/T T T T T T T T T T T T T C
rs246594856
MGI SNP Detail
Chr1:79649783 Cpgi464 within coordinates of
Rr413838 within coordinates of
Tssr12442 18 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs265974388
MGI SNP Detail
Chr1:79649829 Cpgi464 within coordinates of
Rr413838 within coordinates of
Tssr12442 24 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs222934995
MGI SNP Detail
Chr1:79649888 Cpgi464 within coordinates of
Rr413838 within coordinates of
Tssr12442 83 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs584118324
MGI SNP Detail
Chr1:79649898 Cpgi464 within coordinates of
Rr413838 within coordinates of
Tssr12442 93 bp upstream
SNP A/G G G G G G G G G G G G G G G G G A A G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs236152553
MGI SNP Detail
Chr1:79649902 Cpgi464 within coordinates of
Rr413838 within coordinates of
Tssr12442 97 bp upstream
SNP C/T T T T T T T T T T T T T T T T T C C T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs254916875
MGI SNP Detail
Chr1:79649908 Cpgi464 within coordinates of
Rr413838 within coordinates of
Tssr12442 103 bp upstream
SNP A/C A A A A A A A A A A A A A A A A C C A C A A C A A A A C A A A A C A A A A A A C A A A A A A C A A A A
rs30158001
MGI SNP Detail
Chr1:79649983 Cpgi464 within coordinates of
Rr413838 within coordinates of
Tssr12442 178 bp upstream
SNP C/T T T T T T T T C T T C T
rs256763310
MGI SNP Detail
Chr1:79649999 Cpgi464 within coordinates of
Rr413838 within coordinates of
Tssr12442 194 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262604619
MGI SNP Detail
Chr1:79650008 Cpgi464 within coordinates of
Rr413838 within coordinates of
Tssr12442 203 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs30158000
MGI SNP Detail
Chr1:79650017 Cpgi464 within coordinates of
Rr413838 within coordinates of
Tssr12442 212 bp upstream
SNP A/C C C C C C C C C A C C A C
rs30157999
MGI SNP Detail
Chr1:79650066 Cpgi464 within coordinates of
Rr413838 within coordinates of
Tssr12442 261 bp upstream
SNP A/G A A A A A A A A A A A G A
rs30157998
MGI SNP Detail
Chr1:79650138 Rr413838 within coordinates of
Tssr12442 333 bp upstream
SNP A/G A A A A A G A A G A A A A A
rs229073980
MGI SNP Detail
Chr1:79650467 Tssr12442 662 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs586861054
MGI SNP Detail
Chr1:79650498 Tssr12442 693 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G C G G G G G G G C G G G G
rs243402531
MGI SNP Detail
Chr1:79650665 Tssr12442 860 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212776851
MGI SNP Detail
Chr1:79650694 Tssr12442 889 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs236168016
MGI SNP Detail
Chr1:79650768 Tssr12442 963 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs51588460
MGI SNP Detail
Chr1:79650885 Tssr12442 1080 bp upstream
SNP A/G G A A G
rs215780657
MGI SNP Detail
Chr1:79650935 Tssr12442 1130 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241174634
MGI SNP Detail
Chr1:79650939 Tssr12442 1134 bp upstream
SNP A/C A A A A A A A A A A A A A A A A C C A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs252716449
MGI SNP Detail
Chr1:79650978 Tssr12442 1173 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30157997
MGI SNP Detail
Chr1:79651089 Tssr12442 1284 bp upstream
SNP A/G A A A A A A A A G A A G A
rs236089484
MGI SNP Detail
Chr1:79651136 Tssr12442 1331 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249146099
MGI SNP Detail
Chr1:79651185 Tssr12442 1380 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30157996
MGI SNP Detail
Chr1:79651198 Tssr12442 1393 bp upstream
SNP C/T C C C C C C T C C T C
rs244573203
MGI SNP Detail
Chr1:79651228 Tssr12442 1423 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265607407
MGI SNP Detail
Chr1:79651267 Tssr12442 1462 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs231320522
MGI SNP Detail
Chr1:79651287 Tssr12442 1482 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs248527475
MGI SNP Detail
Chr1:79651316 Tssr12442 1511 bp upstream
SNP A/G A A A A A A A A A A A A A A A A G G A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs260408755
MGI SNP Detail
Chr1:79651321 Tssr12442 1516 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs229009964
MGI SNP Detail
Chr1:79651411 Tssr12442 1606 bp upstream
SNP C/T C C C C C C C C C C C C C C C C T T C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs243340361
MGI SNP Detail
Chr1:79651473 Tssr12442 1668 bp upstream
SNP A/T A A A A A A A A A A A A A A A A T T A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs212715943
MGI SNP Detail
Chr1:79651479 Tssr12442 1674 bp upstream
SNP A/T A A A A A A A A A A A A A A A A T T A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs230078199
MGI SNP Detail
Chr1:79651515 Tssr12442 1710 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30157995
MGI SNP Detail
Chr1:79651543 Tssr12442 1738 bp upstream
SNP A/G A A A G A A G A G G G G G G A G
rs216145185
MGI SNP Detail
Chr1:79651571 Tssr12442 1766 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs238701004
MGI SNP Detail
Chr1:79651575 Tssr12442 1770 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs30157994
MGI SNP Detail
Chr1:79651596 Tssr12442 1791 bp upstream
SNP A/G G G G G G G G A G G A G
rs47962675
MGI SNP Detail
Chr1:79651610 Tssr12442 1805 bp upstream
SNP A/G A A G G A
rs30157273
MGI SNP Detail
Chr1:79651658 Tssr12442 1853 bp upstream
SNP C/T C C C C C C C C C T C C T
rs579024744
MGI SNP Detail
Chr1:79651695 Tssr12442 1890 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs249091084
MGI SNP Detail
Chr1:79651702 Tssr12442 1897 bp upstream
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs222804704
MGI SNP Detail
Chr1:79651705 Tssr12442 1900 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs247203192
MGI SNP Detail
Chr1:79651714 Tssr12442 1909 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 100 of 103

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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