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Mouse SNP Summary
Symbol
Name
ID 		Tssr12520
transcription start site region 12520
MGI:5940287

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Showing SNP(s) 1 - 71 of 71

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30247916
MGI SNP Detail		 Chr1:82562814 Col4a4 within coordinates of
D1Mit44 within coordinates of
Tssr12520 1941 bp downstream
 SNP A/T T T T T T T A T T T A T T A T
rs47772127
MGI SNP Detail		 Chr1:82562861 Col4a4 within coordinates of
Tssr12520 1894 bp downstream
 SNP C/T C C C C T T
rs217623975
MGI SNP Detail		 Chr1:82562939 Col4a4 within coordinates of
Tssr12520 1816 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30247915
MGI SNP Detail		 Chr1:82562957 Col4a4 within coordinates of
Tssr12520 1798 bp downstream
 SNP A/G G G G G G G G G G G A G G G G
rs230350074
MGI SNP Detail		 Chr1:82562980 Col4a4 within coordinates of
Tssr12520 1775 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs50324343
MGI SNP Detail		 Chr1:82563007 Col4a4 within coordinates of
Tssr12520 1748 bp downstream
 SNP C/T C C C T
rs243401958
MGI SNP Detail		 Chr1:82563037 Col4a4 within coordinates of
Tssr12520 1718 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213870744
MGI SNP Detail		 Chr1:82563264 Col4a4 within coordinates of
Tssr12520 1491 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239028154
MGI SNP Detail		 Chr1:82563299 Col4a4 within coordinates of
Tssr12520 1456 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30247914
MGI SNP Detail		 Chr1:82563321 Col4a4 within coordinates of
Tssr12520 1434 bp downstream
 SNP G/T G G G G G G G T G G G G T G G T G
rs47217022
MGI SNP Detail		 Chr1:82563338 Col4a4 within coordinates of
Tssr12520 1417 bp downstream
 SNP A/G G G G A
rs225417321
MGI SNP Detail		 Chr1:82563384 Col4a4 within coordinates of
Tssr12520 1371 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs234680344
MGI SNP Detail		 Chr1:82563425 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 1330 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs30247033
MGI SNP Detail		 Chr1:82563475 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 1280 bp downstream
 SNP C/T C C C C C C C C C C C C C T C
rs223322784
MGI SNP Detail		 Chr1:82563497 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 1258 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237188949
MGI SNP Detail		 Chr1:82563500 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 1255 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs264842362
MGI SNP Detail		 Chr1:82563511 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 1244 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs30247032
MGI SNP Detail		 Chr1:82563599 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 1156 bp downstream
 SNP C/T T T T T T T C T C C T C T T C C T
rs246497704
MGI SNP Detail		 Chr1:82563977 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 778 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs263081508
MGI SNP Detail		 Chr1:82563991 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 764 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30247031
MGI SNP Detail		 Chr1:82564019 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 736 bp downstream
 SNP C/T C C C C C C C C C C C C C C T
rs216097468
MGI SNP Detail		 Chr1:82564093 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 662 bp downstream
 SNP G/T T G
rs30247030
MGI SNP Detail		 Chr1:82564146 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 609 bp downstream
 SNP C/T T T T T T T C T C C T C T T C C T
rs30247029
MGI SNP Detail		 Chr1:82564201 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 554 bp downstream
 SNP A/G G G G G G G A G G G A G G A G
rs30247028
MGI SNP Detail		 Chr1:82564215 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 540 bp downstream
 SNP C/T T T T T T T C T C T C T T C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214624772
MGI SNP Detail		 Chr1:82564277 Col4a4 within coordinates of
Rr29713 within coordinates of
Tssr12520 478 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs213615253
MGI SNP Detail		 Chr1:82564316 Col4a4 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12520 439 bp downstream
 SNP A/G G A
rs237299801
MGI SNP Detail		 Chr1:82564351 Col4a4 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12520 404 bp downstream
 SNP C/T T C
rs30247027
MGI SNP Detail		 Chr1:82564387 Col4a4 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12520 368 bp downstream
 SNP C/T C C C C C C C C T T C C C C C T C
rs257315097
MGI SNP Detail		 Chr1:82564440 Col4a4 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12520 315 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30247026
MGI SNP Detail		 Chr1:82564488 Col4a4 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12517 within coordinates of
Tssr12520 267 bp downstream
 SNP A/G G G G G G G G G G G A G G G G
rs30247025
MGI SNP Detail		 Chr1:82564498 Col4a4 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12517 within coordinates of
Tssr12520 257 bp downstream
 SNP A/C C C C C C C C C A A C C C C C A C
rs216983233
MGI SNP Detail		 Chr1:82564506 Col4a4 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12518 within coordinates of
Tssr12520 249 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235703908
MGI SNP Detail		 Chr1:82564517 Col4a4 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12518 within coordinates of
Tssr12520 238 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255406516
MGI SNP Detail		 Chr1:82564651 Col4a3 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12520 104 bp downstream
Tssr7615 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A G A A A A A A A A
rs240537873
MGI SNP Detail		 Chr1:82564762 Col4a3 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12520 within coordinates of
 SNP C/T T C
rs30247024
MGI SNP Detail		 Chr1:82564781 Col4a3 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12520 5 bp upstream
Tssr12521 within coordinates of
 SNP A/C A A A A A A C A A C A
rs256297534
MGI SNP Detail		 Chr1:82564866 Col4a3 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12520 90 bp upstream
Tssr7617 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220559306
MGI SNP Detail		 Chr1:82564990 Col4a3 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12520 214 bp upstream
 SNP C/G C G
rs30246153
MGI SNP Detail		 Chr1:82565057 Col4a3 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12520 281 bp upstream
 SNP C/G G G G G G G G C G G G G C G
rs243783319
MGI SNP Detail		 Chr1:82565063 Col4a3 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12520 287 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G G A G G A G G G G G G G G G
rs265374672
MGI SNP Detail		 Chr1:82565099 Col4a3 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12520 323 bp upstream
 SNP C/T T C
rs221147853
MGI SNP Detail		 Chr1:82565112 Col4a3 within coordinates of
Cpgi476 within coordinates of
Rr29713 within coordinates of
Tssr12520 336 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230323041
MGI SNP Detail		 Chr1:82565135 Col4a3 within coordinates of
Rr29713 within coordinates of
Tssr12520 359 bp upstream
 SNP C/T T C
rs245506980
MGI SNP Detail		 Chr1:82565137 Col4a3 within coordinates of
Rr29713 within coordinates of
Tssr12520 361 bp upstream
 SNP G/T T G
rs223773547
MGI SNP Detail		 Chr1:82565149 Col4a3 within coordinates of
Rr29713 within coordinates of
Tssr12520 373 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245344790
MGI SNP Detail		 Chr1:82565185 Col4a3 within coordinates of
Rr29713 within coordinates of
Tssr12520 409 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs262577370
MGI SNP Detail		 Chr1:82565186 Col4a3 within coordinates of
Rr29713 within coordinates of
Tssr12520 410 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C C C C C C C C C C C T C C C C C C C C C
rs231596543
MGI SNP Detail		 Chr1:82565201 Col4a3 within coordinates of
Rr29713 within coordinates of
Tssr12520 425 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs252656288
MGI SNP Detail		 Chr1:82565296 Col4a3 within coordinates of
Rr29713 within coordinates of
Tssr12520 520 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A G A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216006808
MGI SNP Detail		 Chr1:82565304 Col4a3 within coordinates of
Rr29713 within coordinates of
Tssr12520 528 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs30246152
MGI SNP Detail		 Chr1:82565450 Col4a3 within coordinates of
Tssr12520 674 bp upstream
 SNP C/T C C C C C C C T C C C T C
rs248983767
MGI SNP Detail		 Chr1:82565460 Col4a3 within coordinates of
Tssr12520 684 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212241099
MGI SNP Detail		 Chr1:82565508 Col4a3 within coordinates of
Tssr12520 732 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30246151
MGI SNP Detail		 Chr1:82565521 Col4a3 within coordinates of
Tssr12520 745 bp upstream
 SNP A/G G G G G G A G G A
rs30246150
MGI SNP Detail		 Chr1:82565737 Col4a3 within coordinates of
Tssr12520 961 bp upstream
 SNP A/G A A A A A A G G A A A G A
rs30246149
MGI SNP Detail		 Chr1:82565842 Col4a3 within coordinates of
Tssr12520 1066 bp upstream
 SNP C/T C C C C C C C T T C C C T C
rs580850496
MGI SNP Detail		 Chr1:82565893 Col4a3 within coordinates of
Tssr12520 1117 bp upstream
 SNP C/T C C C C C C C C C T C C C C C C C C C C C C C C C T C C T C C C C C C C C C C T C C C C C C C C C C C
rs261437876
MGI SNP Detail		 Chr1:82566170 Col4a3 within coordinates of
Tssr12520 1394 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs213582596
MGI SNP Detail		 Chr1:82566200 Col4a3 within coordinates of
Tssr12520 1424 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G T G G G G G G G G G G G G G G G T G G G G G G G G G
rs238991794
MGI SNP Detail		 Chr1:82566217 Col4a3 within coordinates of
Tssr12520 1441 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258577105
MGI SNP Detail		 Chr1:82566252 Col4a3 within coordinates of
Tssr12520 1476 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221187768
MGI SNP Detail		 Chr1:82566283 Col4a3 within coordinates of
Tssr12520 1507 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T T T T T T T T G T T G T T T T T T T T T
rs30246148
MGI SNP Detail		 Chr1:82566319 Col4a3 within coordinates of
Tssr12520 1543 bp upstream
 SNP A/G G G G G A G A
rs240504689
MGI SNP Detail		 Chr1:82566332 Col4a3 within coordinates of
Tssr12520 1556 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs584271471
MGI SNP Detail		 Chr1:82566375 Col4a3 within coordinates of
Tssr12520 1599 bp upstream
 SNP A/G A A A A A A A A A G A A A A A A A A A A A A A A A G A A G A A A A A A A A A A G A A A A A A A G A A A A A
rs253044064
MGI SNP Detail		 Chr1:82566408 Col4a3 within coordinates of
Tssr12520 1632 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217747777
MGI SNP Detail		 Chr1:82566409 Col4a3 within coordinates of
Tssr12520 1633 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242542070
MGI SNP Detail		 Chr1:82566553 Col4a3 within coordinates of
Tssr12520 1777 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs30246147
MGI SNP Detail		 Chr1:82566620 Col4a3 within coordinates of
Tssr12520 1844 bp upstream
 SNP C/G G G G G G G G C C G G G C G
rs214090900
MGI SNP Detail		 Chr1:82566649 Col4a3 within coordinates of
Tssr12520 1873 bp upstream
 SNP C/T T C
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Showing SNP(s) 1 - 71 of 71
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory