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Mouse SNP Summary
Symbol
Name
ID 		Tssr12548
transcription start site region 12548
MGI:5940315

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30284799
MGI SNP Detail		 Chr1:84013235 Tssr12548 1925 bp downstream
 SNP C/T C C C C C C T C C C T C C T C
rs248973297
MGI SNP Detail		 Chr1:84013303 Tssr12548 1857 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212717523
MGI SNP Detail		 Chr1:84013335 Tssr12548 1825 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs52561702
MGI SNP Detail		 Chr1:84013468 Tssr12548 1692 bp downstream
 SNP A/C A A A C A
rs245657097
MGI SNP Detail		 Chr1:84013531 Tssr12548 1629 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30284798
MGI SNP Detail		 Chr1:84013547 Tssr12548 1613 bp downstream
 SNP A/G G G G G G G A G G G A G G A G
rs238661551
MGI SNP Detail		 Chr1:84013596 Tssr12548 1564 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G A G G G G G G G G G
rs263374460
MGI SNP Detail		 Chr1:84013597 Tssr12548 1563 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T C T T T T C T T T C
rs225838527
MGI SNP Detail		 Chr1:84013598 Tssr12548 1562 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243226512
MGI SNP Detail		 Chr1:84013716 Tssr12548 1444 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs248304988
MGI SNP Detail		 Chr1:84013756 Tssr12548 1404 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218850111
MGI SNP Detail		 Chr1:84013853 Tssr12548 1307 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs30284797
MGI SNP Detail		 Chr1:84013886 Tssr12548 1274 bp downstream
 SNP A/G A A A A A A G A A A G A A G A
rs256680582
MGI SNP Detail		 Chr1:84014097 Pid1 within coordinates of
Tssr12548 1063 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221052543
MGI SNP Detail		 Chr1:84014100 Pid1 within coordinates of
Tssr12548 1060 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246894142
MGI SNP Detail		 Chr1:84014339 Pid1 within coordinates of
Tssr12548 821 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265829157
MGI SNP Detail		 Chr1:84014673 Pid1 within coordinates of
Tssr12548 487 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs30284796
MGI SNP Detail		 Chr1:84014677 Pid1 within coordinates of
Tssr12548 483 bp downstream
 SNP A/G G G A G G G A G G G A A A G A G G
rs252059782
MGI SNP Detail		 Chr1:84014844 Pid1 within coordinates of
Tssr12548 316 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256547521
MGI SNP Detail		 Chr1:84014856 Pid1 within coordinates of
Tssr12548 304 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30284795
MGI SNP Detail		 Chr1:84014980 Pid1 within coordinates of
Tssr12548 180 bp downstream
 SNP C/T C C C C C C T C C C T C C T C
rs245569755
MGI SNP Detail		 Chr1:84015000 Pid1 within coordinates of
Tssr12547 within coordinates of
Tssr12548 160 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215072760
MGI SNP Detail		 Chr1:84015067 Pid1 within coordinates of
Tssr12548 93 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs233015858
MGI SNP Detail		 Chr1:84015095 Pid1 within coordinates of
Tssr12548 65 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs30284794
MGI SNP Detail		 Chr1:84015128 Pid1 within coordinates of
Tssr12548 32 bp downstream
 SNP C/T T T T T T T C T T T C T T C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219083264
MGI SNP Detail		 Chr1:84015223 Pid1 within coordinates of
Tssr12548 39 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30283953
MGI SNP Detail		 Chr1:84015228 Pid1 within coordinates of
Tssr12548 44 bp upstream
 SNP C/G G G G G G G C G G G C G G C G
rs248266567
MGI SNP Detail		 Chr1:84015263 Pid1 within coordinates of
Tssr12548 79 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs213070067
MGI SNP Detail		 Chr1:84015309 Pid1 within coordinates of
Tssr12548 125 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs231576472
MGI SNP Detail		 Chr1:84015312 Pid1 within coordinates of
Tssr12548 128 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250707199
MGI SNP Detail		 Chr1:84015329 Pid1 within coordinates of
Tssr12548 145 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A A A A A A A C A A A A A A C A A C A A A A A A A A
rs224480545
MGI SNP Detail		 Chr1:84015345 Pid1 within coordinates of
Tssr12548 161 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs249579372
MGI SNP Detail		 Chr1:84015354 Pid1 within coordinates of
Tssr12548 170 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260537738
MGI SNP Detail		 Chr1:84015516 Pid1 within coordinates of
Tssr12548 332 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227663300
MGI SNP Detail		 Chr1:84015523 Pid1 within coordinates of
Tssr12548 339 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs236859594
MGI SNP Detail		 Chr1:84015557 Pid1 within coordinates of
Tssr12548 373 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256467179
MGI SNP Detail		 Chr1:84015593 Pid1 within coordinates of
Tssr12548 409 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs30283952
MGI SNP Detail		 Chr1:84015941 Pid1 within coordinates of
Tssr12548 757 bp upstream
 SNP A/G A A A A A A G A A A G A A G A
rs30283951
MGI SNP Detail		 Chr1:84015992 Pid1 within coordinates of
Tssr12548 808 bp upstream
 SNP A/G A A A A A A G A A A G A A G A
rs30283950
MGI SNP Detail		 Chr1:84016010 Pid1 within coordinates of
Tssr12548 826 bp upstream
 SNP G/T T T T T T T T T T T G T T G T
rs232238281
MGI SNP Detail		 Chr1:84016085 Pid1 within coordinates of
Tssr12548 901 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs259146181
MGI SNP Detail		 Chr1:84016121 Pid1 within coordinates of
Tssr12548 937 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219145490
MGI SNP Detail		 Chr1:84016178 Pid1 within coordinates of
Tssr12548 994 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30283949
MGI SNP Detail		 Chr1:84016181 Pid1 within coordinates of
Tssr12548 997 bp upstream
 SNP A/G A A A A A A G A A A G A A G A
rs242338032
MGI SNP Detail		 Chr1:84016210 Pid1 within coordinates of
Tssr12548 1026 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C T C C C C C C T C C T C C C C C C C C C
rs212977894
MGI SNP Detail		 Chr1:84016226 Pid1 within coordinates of
Tssr12548 1042 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A G A A A A G A A A A
rs231542609
MGI SNP Detail		 Chr1:84016237 Pid1 within coordinates of
Tssr12548 1053 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C G C C C C G C C C C
rs250670108
MGI SNP Detail		 Chr1:84016314 Pid1 within coordinates of
Tssr12548 1130 bp upstream
 SNP A/C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C A C C C C
rs216422312
MGI SNP Detail		 Chr1:84016321 Pid1 within coordinates of
Tssr12548 1137 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238933721
MGI SNP Detail		 Chr1:84016327 Pid1 within coordinates of
Tssr12548 1143 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263944196
MGI SNP Detail		 Chr1:84016395 Pid1 within coordinates of
Tssr12548 1211 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227098022
MGI SNP Detail		 Chr1:84016418 Pid1 within coordinates of
Tssr12548 1234 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237645708
MGI SNP Detail		 Chr1:84016434 Pid1 within coordinates of
Tssr12548 1250 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs250071324
MGI SNP Detail		 Chr1:84016449 Pid1 within coordinates of
Tssr12548 1265 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs219306602
MGI SNP Detail		 Chr1:84016458 Pid1 within coordinates of
Tssr12548 1274 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239408690
MGI SNP Detail		 Chr1:84016479 Pid1 within coordinates of
Tssr12548 1295 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs263056405
MGI SNP Detail		 Chr1:84016486 Pid1 within coordinates of
Tssr12548 1302 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs30283948
MGI SNP Detail		 Chr1:84016527 Pid1 within coordinates of
Tssr12548 1343 bp upstream
 SNP A/C A A A A A A A A A C A A C A
rs247290739
MGI SNP Detail		 Chr1:84016554 Pid1 within coordinates of
Tssr12548 1370 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs266106442
MGI SNP Detail		 Chr1:84016571 Pid1 within coordinates of
Tssr12548 1387 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T G T T T T T T G T T G T T T T T T T T T
rs30283947
MGI SNP Detail		 Chr1:84016578 Pid1 within coordinates of
Tssr12548 1394 bp upstream
 SNP A/G G G G G G G G G G G A G G A G
rs243066857
MGI SNP Detail		 Chr1:84016588 Pid1 within coordinates of
Tssr12548 1404 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs30283946
MGI SNP Detail		 Chr1:84016605 Pid1 within coordinates of
Tssr12548 1421 bp upstream
 SNP A/G G G G G G G A G G G A G G A G
rs225351581
MGI SNP Detail		 Chr1:84016729 Pid1 within coordinates of
Tssr12548 1545 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs584965394
MGI SNP Detail		 Chr1:84016740 Pid1 within coordinates of
Tssr12548 1556 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs587538454
MGI SNP Detail		 Chr1:84016742 Pid1 within coordinates of
Tssr12548 1558 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244655463
MGI SNP Detail		 Chr1:84016778 Pid1 within coordinates of
Tssr12548 1594 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T G T T G T T T T T T T T
rs215926029
MGI SNP Detail		 Chr1:84016779 Pid1 within coordinates of
Tssr12548 1595 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs241365546
MGI SNP Detail		 Chr1:84016793 Pid1 within coordinates of
Tssr12548 1609 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs254147512
MGI SNP Detail		 Chr1:84016794 Pid1 within coordinates of
Tssr12548 1610 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs219453565
MGI SNP Detail		 Chr1:84017018 Pid1 within coordinates of
Tssr12548 1834 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230194070
MGI SNP Detail		 Chr1:84017082 Pid1 within coordinates of
Tssr12548 1898 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs250805574
MGI SNP Detail		 Chr1:84017097 Pid1 within coordinates of
Tssr12548 1913 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A A A A A A A G A A A A A A G A A G A A A A A A A A A
rs219912961
MGI SNP Detail		 Chr1:84017123 Pid1 within coordinates of
Tssr12548 1939 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 74 of 74
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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