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Mouse SNP Summary
Symbol
Name
ID 		Tssr12853
transcription start site region 12853
MGI:5940620

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Showing SNP(s) 1 - 54 of 54

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584848224
MGI SNP Detail		 Chr1:87320457 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1986 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs247435998
MGI SNP Detail		 Chr1:87320465 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1978 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217920212
MGI SNP Detail		 Chr1:87320474 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1969 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240198560
MGI SNP Detail		 Chr1:87320479 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1964 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260833382
MGI SNP Detail		 Chr1:87320494 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1949 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212853912
MGI SNP Detail		 Chr1:87320499 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1944 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231122958
MGI SNP Detail		 Chr1:87320503 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1940 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48615331
MGI SNP Detail		 Chr1:87320514 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1929 bp downstream
 SNP A/G A A A A A A G A A A G A A G A
rs578585108
MGI SNP Detail		 Chr1:87320533 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1910 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220533129
MGI SNP Detail		 Chr1:87320576 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1867 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582176441
MGI SNP Detail		 Chr1:87320599 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1844 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs578350919
MGI SNP Detail		 Chr1:87320615 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1828 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239763178
MGI SNP Detail		 Chr1:87320785 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1658 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260046144
MGI SNP Detail		 Chr1:87320797 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1646 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226462292
MGI SNP Detail		 Chr1:87320832 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1611 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs248692668
MGI SNP Detail		 Chr1:87320896 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1547 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264747629
MGI SNP Detail		 Chr1:87320981 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1462 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582054380
MGI SNP Detail		 Chr1:87320996 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1447 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs46786118
MGI SNP Detail		 Chr1:87321029 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1414 bp downstream
 SNP A/T T T T T T T T T T T A T T A T
rs223394953
MGI SNP Detail		 Chr1:87321079 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1364 bp downstream
 SNP C/T T C
rs243182971
MGI SNP Detail		 Chr1:87321311 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1132 bp downstream
 SNP G/T T G
rs258376385
MGI SNP Detail		 Chr1:87321335 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1108 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227436792
MGI SNP Detail		 Chr1:87321337 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 1106 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs247369444
MGI SNP Detail		 Chr1:87321465 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 978 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs218283601
MGI SNP Detail		 Chr1:87321826 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 617 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234839868
MGI SNP Detail		 Chr1:87321882 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 561 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249076410
MGI SNP Detail		 Chr1:87321918 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 525 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213204900
MGI SNP Detail		 Chr1:87321998 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 445 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231421512
MGI SNP Detail		 Chr1:87322104 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 339 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs47202820
MGI SNP Detail		 Chr1:87322115 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 328 bp downstream
 SNP C/T C C C C C C T C C C C C C C C
rs46519422
MGI SNP Detail		 Chr1:87322202 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 241 bp downstream
 SNP G/T G G G G G G G G G G T G G T G
rs47499767
MGI SNP Detail		 Chr1:87322272 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 171 bp downstream
 SNP C/T T T T T T T C T T T T T T T T
rs263657681
MGI SNP Detail		 Chr1:87322274 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 169 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226488026
MGI SNP Detail		 Chr1:87322310 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Tssr12853 133 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs46959449
MGI SNP Detail		 Chr1:87322336 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Rr414787 within coordinates of
Tssr12853 107 bp downstream
 SNP A/G G G G G G G G G G G A G G A G
rs255786888
MGI SNP Detail		 Chr1:87322340 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Rr414787 within coordinates of
Tssr12853 103 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48838904
MGI SNP Detail		 Chr1:87322368 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Rr414787 within coordinates of
Tssr12853 75 bp downstream
 SNP G/T T T T T T T G T T T T T T T T
rs239245492
MGI SNP Detail		 Chr1:87322386 Gigyf2 within coordinates of
Kcnj13 within coordinates of
Rr414787 within coordinates of
Tssr12853 57 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs258703806
MGI SNP Detail		 Chr1:87322851 Gigyf2 within coordinates of
Tssr12853 395 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs46533301
MGI SNP Detail		 Chr1:87322937 Gigyf2 within coordinates of
Tssr12853 481 bp upstream
 SNP A/G A A A A A A G A A A G A A G A
rs580480117
MGI SNP Detail		 Chr1:87322971 Gigyf2 within coordinates of
Tssr12853 515 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246571825
MGI SNP Detail		 Chr1:87323104 Gigyf2 within coordinates of
Tssr12853 648 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs51813873
MGI SNP Detail		 Chr1:87323158 Gigyf2 within coordinates of
Tssr12853 702 bp upstream
 SNP A/G G G G G G G A G G G G A G G A A G
rs50767625
MGI SNP Detail		 Chr1:87323232 Gigyf2 within coordinates of
Tssr12853 776 bp upstream
 SNP A/G G G G G G G A G G G G G G G G
rs46623940
MGI SNP Detail		 Chr1:87323583 Gigyf2 within coordinates of
Tssr12853 1127 bp upstream
 SNP G/T G G G G G G T G G G T G G T G
rs212738352
MGI SNP Detail		 Chr1:87323626 Gigyf2 within coordinates of
Tssr12853 1170 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs225160460
MGI SNP Detail		 Chr1:87323781 Gigyf2 within coordinates of
Tssr12853 1325 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244501983
MGI SNP Detail		 Chr1:87323934 Gigyf2 within coordinates of
Tssr12853 1478 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51874644
MGI SNP Detail		 Chr1:87323957 Gigyf2 within coordinates of
Tssr12853 1501 bp upstream
 SNP C/G C C C C C C G C C C C C C C C
rs233275485
MGI SNP Detail		 Chr1:87324057 Gigyf2 within coordinates of
Tssr12853 1601 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253657079
MGI SNP Detail		 Chr1:87324244 Gigyf2 within coordinates of
Tssr12853 1788 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218787744
MGI SNP Detail		 Chr1:87324365 Gigyf2 within coordinates of
Tssr12853 1909 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs234387459
MGI SNP Detail		 Chr1:87324402 Gigyf2 within coordinates of
Tssr12853 1946 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs261379632
MGI SNP Detail		 Chr1:87324404 Gigyf2 within coordinates of
Tssr12853 1948 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
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Showing SNP(s) 1 - 54 of 54
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory