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Mouse SNP Summary
Symbol
Name
ID 		Tssr13853
transcription start site region 13853
MGI:5941620

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Showing SNP(s) 1 - 58 of 58

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225003899
MGI SNP Detail		 Chr1:135301083 Shisa4 within coordinates of
Tssr13853 1888 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs242058915
MGI SNP Detail		 Chr1:135301132 Shisa4 within coordinates of
Tssr13853 1839 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264431573
MGI SNP Detail		 Chr1:135301142 Shisa4 within coordinates of
Tssr13853 1829 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232066665
MGI SNP Detail		 Chr1:135301171 Shisa4 within coordinates of
Tssr13844 within coordinates of
Tssr13853 1800 bp downstream
 SNP C/G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T G T T T T T T T T C T T T T
rs217177590
MGI SNP Detail		 Chr1:135301180 Shisa4 within coordinates of
Tssr13844 within coordinates of
Tssr13853 1791 bp downstream
 SNP A/G G A
rs32421256
MGI SNP Detail		 Chr1:135301231 Shisa4 within coordinates of
Tssr13853 1740 bp downstream
 SNP A/G G G A G G A
rs225888533
MGI SNP Detail		 Chr1:135301356 Shisa4 within coordinates of
Tssr13853 1615 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs242058239
MGI SNP Detail		 Chr1:135301375 Shisa4 within coordinates of
Tssr13853 1596 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs212661650
MGI SNP Detail		 Chr1:135301379 Shisa4 within coordinates of
Tssr13853 1592 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31710263
MGI SNP Detail		 Chr1:135301475 Shisa4 within coordinates of
Tssr13853 1496 bp downstream
 SNP C/T C C T C C C
rs211798481
MGI SNP Detail		 Chr1:135301594 Shisa4 within coordinates of
Tssr13853 1377 bp downstream
 SNP A/G G A
rs52410340
MGI SNP Detail		 Chr1:135301598 Shisa4 within coordinates of
Tssr13853 1373 bp downstream
 SNP A/G G A
rs252939873
MGI SNP Detail		 Chr1:135301665 Shisa4 within coordinates of
Tssr13853 1306 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs219799428
MGI SNP Detail		 Chr1:135301749 Shisa4 within coordinates of
Tssr13853 1222 bp downstream
 SNP A/C/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs50401089
MGI SNP Detail		 Chr1:135301792 Shisa4 within coordinates of
Tssr13853 1179 bp downstream
 SNP C C C C C
rs259756814
MGI SNP Detail		 Chr1:135301805 Shisa4 within coordinates of
Tssr13853 1166 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222419906
MGI SNP Detail		 Chr1:135301860 Shisa4 within coordinates of
Tssr13853 1111 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239897286
MGI SNP Detail		 Chr1:135301892 Shisa4 within coordinates of
Tssr13853 1079 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs249828718
MGI SNP Detail		 Chr1:135302304 Cpgi790 within coordinates of
Shisa4 within coordinates of
Tssr13853 667 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219005191
MGI SNP Detail		 Chr1:135302529 Cpgi790 within coordinates of
Shisa4 within coordinates of
Tssr13853 442 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs242094260
MGI SNP Detail		 Chr1:135302688 Cpgi790 within coordinates of
Shisa4 within coordinates of
Tssr13853 283 bp downstream
 SNP C/G C C C C C C C C C G C C C C C C C C C C G C C C C G C C C C C C C C G C C C C C C C C C C C C G C C C G C
rs266151206
MGI SNP Detail		 Chr1:135302856 Cpgi790 within coordinates of
Shisa4 within coordinates of
Tssr13853 115 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs224200517
MGI SNP Detail		 Chr1:135303041 Cpgi790 within coordinates of
Rr419137 within coordinates of
Tssr13853 58 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G A A G G G G G G A G G G G A G G A
rs248857550
MGI SNP Detail		 Chr1:135303156 Cpgi790 within coordinates of
Rr419137 within coordinates of
Tssr13853 173 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262308214
MGI SNP Detail		 Chr1:135303408 Rr419137 within coordinates of
Tssr13853 425 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226005227
MGI SNP Detail		 Chr1:135303411 Rr419137 within coordinates of
Tssr13853 428 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242188529
MGI SNP Detail		 Chr1:135303425 Rr419137 within coordinates of
Tssr13853 442 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T T C C T T C C C C C C T C C C C T C C T
rs254461474
MGI SNP Detail		 Chr1:135303518 Tssr13853 535 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32382715
MGI SNP Detail		 Chr1:135303551 Tssr13853 568 bp upstream
 SNP A/G G G A G G G
rs254412760
MGI SNP Detail		 Chr1:135303581 Tssr13853 598 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215727189
MGI SNP Detail		 Chr1:135303605 Tssr13853 622 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs238263293
MGI SNP Detail		 Chr1:135303627 Tssr13853 644 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258677299
MGI SNP Detail		 Chr1:135303649 Tssr13853 666 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs214259359
MGI SNP Detail		 Chr1:135303936 Tssr13853 953 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T C T T C C T T C C T T T T T T C T T T T C T T C
rs233243161
MGI SNP Detail		 Chr1:135303949 Tssr13853 966 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs249866237
MGI SNP Detail		 Chr1:135303956 Tssr13853 973 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31600769
MGI SNP Detail		 Chr1:135303963 Tssr13853 980 bp upstream
 SNP A/C C C A C C
rs235654181
MGI SNP Detail		 Chr1:135304045 Tssr13853 1062 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T C C T T C C T T T T T T C T T T T C T T C
rs260950933
MGI SNP Detail		 Chr1:135304057 Tssr13853 1074 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31472300
MGI SNP Detail		 Chr1:135304059 Tssr13853 1076 bp upstream
 SNP C/G G G C
rs246505676
MGI SNP Detail		 Chr1:135304123 Tssr13853 1140 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265075746
MGI SNP Detail		 Chr1:135304138 Tssr13853 1155 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31499395
MGI SNP Detail		 Chr1:135304173 Tssr13853 1190 bp upstream
 SNP G/T T T G T T T
rs235776911
MGI SNP Detail		 Chr1:135304300 Tssr13853 1317 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254491720
MGI SNP Detail		 Chr1:135304337 Tssr13853 1354 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225678832
MGI SNP Detail		 Chr1:135304450 Tssr13853 1467 bp upstream
 SNP C/T T C
rs228138066
MGI SNP Detail		 Chr1:135304519 Tssr13853 1536 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs31992255
MGI SNP Detail		 Chr1:135304560 Tssr13853 1577 bp upstream
 SNP A/G A A A G A A A
rs263016689
MGI SNP Detail		 Chr1:135304588 Tssr13853 1605 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232756434
MGI SNP Detail		 Chr1:135304634 Tssr13853 1651 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250358182
MGI SNP Detail		 Chr1:135304644 Tssr13853 1661 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31605175
MGI SNP Detail		 Chr1:135304650 Tssr13853 1667 bp upstream
 SNP A/G A A A G A A A
rs233290648
MGI SNP Detail		 Chr1:135304694 Tssr13853 1711 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs31523844
MGI SNP Detail		 Chr1:135304737 Tssr13853 1754 bp upstream
 SNP C/G C C C G C C C
rs213109822
MGI SNP Detail		 Chr1:135304800 Tssr13853 1817 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239671325
MGI SNP Detail		 Chr1:135304831 Tssr13853 1848 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264341183
MGI SNP Detail		 Chr1:135304843 Tssr13853 1860 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224364385
MGI SNP Detail		 Chr1:135304907 Tssr13853 1924 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 58 of 58
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory