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Mouse SNP Summary
Symbol
Name
ID 		Tssr13871
transcription start site region 13871
MGI:5941638

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Showing SNP(s) 1 - 67 of 67

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248153855
MGI SNP Detail		 Chr1:135511111 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1994 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49358109
MGI SNP Detail		 Chr1:135511169 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1936 bp downstream
 SNP A/G G G G A G
rs219514768
MGI SNP Detail		 Chr1:135511211 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1894 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238480472
MGI SNP Detail		 Chr1:135511285 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1820 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253949817
MGI SNP Detail		 Chr1:135511287 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1818 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs229238173
MGI SNP Detail		 Chr1:135511373 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1732 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253909385
MGI SNP Detail		 Chr1:135511397 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1708 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs31724637
MGI SNP Detail		 Chr1:135511435 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1670 bp downstream
 SNP A/G G G G A G G G
rs31581390
MGI SNP Detail		 Chr1:135511446 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1659 bp downstream
 SNP C/T T T T C T T T
rs50038637
MGI SNP Detail		 Chr1:135511725 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1380 bp downstream
 SNP A A A A A
rs213476373
MGI SNP Detail		 Chr1:135511864 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1241 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs226338140
MGI SNP Detail		 Chr1:135511921 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1184 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243240652
MGI SNP Detail		 Chr1:135511931 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1174 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs48302131
MGI SNP Detail		 Chr1:135511939 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1166 bp downstream
 SNP C C C C C C
rs32428579
MGI SNP Detail		 Chr1:135512040 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1065 bp downstream
 SNP A/T A A T A
rs30592929
MGI SNP Detail		 Chr1:135512043 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1062 bp downstream
 SNP C/T T T C T
rs31855304
MGI SNP Detail		 Chr1:135512050 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 1055 bp downstream
 SNP C/T T T C T
rs260562850
MGI SNP Detail		 Chr1:135512121 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 984 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs219512829
MGI SNP Detail		 Chr1:135512221 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 884 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32419739
MGI SNP Detail		 Chr1:135512235 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 870 bp downstream
 SNP C/T C C T C C C
rs13476124
MGI SNP Detail		 Chr1:135512465 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 640 bp downstream
 SNP A/T T T A T A A A A A A A A A A A A A A T T A A T A T T A A A A A A T T A A A A A A T A A A A A A
rs261006809
MGI SNP Detail		 Chr1:135512588 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 517 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30646459
MGI SNP Detail		 Chr1:135512591 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 514 bp downstream
 SNP A/T A A T A A A
rs250201946
MGI SNP Detail		 Chr1:135512816 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 289 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264441195
MGI SNP Detail		 Chr1:135513011 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 94 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs52535188
MGI SNP Detail		 Chr1:135513123 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 5 bp upstream
 SNP G G
rs241188498
MGI SNP Detail		 Chr1:135513152 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 34 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs257402582
MGI SNP Detail		 Chr1:135513226 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 108 bp upstream
Tssr13872 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs52328400
MGI SNP Detail		 Chr1:135513238 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 120 bp upstream
Tssr13872 within coordinates of
 SNP A/C A A C A
rs243326746
MGI SNP Detail		 Chr1:135513252 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 134 bp upstream
Tssr13872 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212932493
MGI SNP Detail		 Chr1:135513334 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 216 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs232821919
MGI SNP Detail		 Chr1:135513397 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 279 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs259773231
MGI SNP Detail		 Chr1:135513459 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 341 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs30606406
MGI SNP Detail		 Chr1:135513601 Cpgi793 within coordinates of
Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 483 bp upstream
 SNP C/G G C C G
rs233175426
MGI SNP Detail		 Chr1:135513688 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 570 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs252219322
MGI SNP Detail		 Chr1:135513689 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 571 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213930186
MGI SNP Detail		 Chr1:135513777 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 659 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31685103
MGI SNP Detail		 Chr1:135513857 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 739 bp upstream
 SNP C/T T C C C T
rs30851616
MGI SNP Detail		 Chr1:135513880 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 762 bp upstream
 SNP A/G A G A A A
rs582389454
MGI SNP Detail		 Chr1:135513938 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 820 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33859545
MGI SNP Detail		 Chr1:135514033 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 915 bp upstream
 SNP A/G A G A A A
rs30463768
MGI SNP Detail		 Chr1:135514049 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 931 bp upstream
 SNP C/T C T C T C
rs32497222
MGI SNP Detail		 Chr1:135514050 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 932 bp upstream
 SNP C/G C G C G C
rs31950494
MGI SNP Detail		 Chr1:135514052 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 934 bp upstream
 SNP A/T T T A
rs241259521
MGI SNP Detail		 Chr1:135514064 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 946 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs32574740
MGI SNP Detail		 Chr1:135514066 Nav1 within coordinates of
Rr28599 within coordinates of
Tssr13871 948 bp upstream
 SNP C/T T C T T T
rs237021047
MGI SNP Detail		 Chr1:135514226 Nav1 within coordinates of
Tssr13871 1108 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs586246444
MGI SNP Detail		 Chr1:135514227 Nav1 within coordinates of
Tssr13871 1109 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs580403515
MGI SNP Detail		 Chr1:135514231 Nav1 within coordinates of
Tssr13871 1113 bp upstream
 SNP G/T G G G G G G G G G G G T G G G G G G G
rs261853090
MGI SNP Detail		 Chr1:135514249 Nav1 within coordinates of
Tssr13871 1131 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233784959
MGI SNP Detail		 Chr1:135514250 Nav1 within coordinates of
Tssr13871 1132 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs32132792
MGI SNP Detail		 Chr1:135514309 Nav1 within coordinates of
Tssr13871 1191 bp upstream
 SNP C/G G C C
rs265410733
MGI SNP Detail		 Chr1:135514325 Nav1 within coordinates of
Tssr13871 1207 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227243329
MGI SNP Detail		 Chr1:135514326 Nav1 within coordinates of
Tssr13871 1208 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32292861
MGI SNP Detail		 Chr1:135514340 Nav1 within coordinates of
Tssr13871 1222 bp upstream
 SNP C/T T C T
rs213957385
MGI SNP Detail		 Chr1:135514387 Nav1 within coordinates of
Tssr13871 1269 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31768234
MGI SNP Detail		 Chr1:135514477 Nav1 within coordinates of
Tssr13871 1359 bp upstream
 SNP A/G A A G A A A
rs585537719
MGI SNP Detail		 Chr1:135514520 Nav1 within coordinates of
Tssr13871 1402 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs32157173
MGI SNP Detail		 Chr1:135514633 Nav1 within coordinates of
Tssr13871 1515 bp upstream
 SNP C/T C C T C C C
rs213046784
MGI SNP Detail		 Chr1:135514758 Nav1 within coordinates of
Tssr13871 1640 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242281747
MGI SNP Detail		 Chr1:135514842 Nav1 within coordinates of
Tssr13871 1724 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs51423686
MGI SNP Detail		 Chr1:135514864 Nav1 within coordinates of
Tssr13871 1746 bp upstream
 SNP T T T T T T
rs48339708
MGI SNP Detail		 Chr1:135514907 Nav1 within coordinates of
Tssr13871 1789 bp upstream
 SNP A A A A A A
rs50481528
MGI SNP Detail		 Chr1:135514954 Nav1 within coordinates of
Tssr13871 1836 bp upstream
 SNP A A A A A A
rs251198004
MGI SNP Detail		 Chr1:135514975 Nav1 within coordinates of
Tssr13871 1857 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220256414
MGI SNP Detail		 Chr1:135514992 Nav1 within coordinates of
Tssr13871 1874 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs48498573
MGI SNP Detail		 Chr1:135514997 Nav1 within coordinates of
Tssr13871 1879 bp upstream
 SNP G G G G G G
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Showing SNP(s) 1 - 67 of 67
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory