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Mouse SNP Summary
Symbol
Name
ID
Tssr14116
transcription start site region 14116
MGI:5941883

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Showing SNP(s) 1 - 83 of 83

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31079619
MGI SNP Detail
Chr1:149323768 Gm29398 within coordinates of
Tssr14116 1922 bp downstream
SNP C/G C C C G C C C C C C G C G G C
rs244329092
MGI SNP Detail
Chr1:149323788 Gm29398 within coordinates of
Tssr14116 1902 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31079618
MGI SNP Detail
Chr1:149323869 Gm29398 within coordinates of
Tssr14116 1821 bp downstream
SNP C/T T T C T C T T T T C T C C C
rs31079617
MGI SNP Detail
Chr1:149323905 Gm29398 within coordinates of
Tssr14116 1785 bp downstream
SNP A/G G G G G G G G G G G A G
rs31079616
MGI SNP Detail
Chr1:149323931 Gm29398 within coordinates of
Tssr14116 1759 bp downstream
SNP A/G G G A G A G G G G A G A A A
rs219093330
MGI SNP Detail
Chr1:149324003 Gm29398 within coordinates of
Tssr14116 1687 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
rs258999887
MGI SNP Detail
Chr1:149324004 Gm29398 within coordinates of
Tssr14116 1686 bp downstream
SNP A/G A G
rs31079615
MGI SNP Detail
Chr1:149324066 Gm29398 within coordinates of
Tssr14116 1624 bp downstream
SNP A/T A A T A T A A A A T A T T T
rs31079614
MGI SNP Detail
Chr1:149324093 Gm29398 within coordinates of
Tssr14116 1597 bp downstream
SNP G/T G G G G G T G G G G G G G
rs231998500
MGI SNP Detail
Chr1:149324137 Gm29398 within coordinates of
Tssr14116 1553 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A C A
rs224133002
MGI SNP Detail
Chr1:149324139 Gm29398 within coordinates of
Tssr14116 1551 bp downstream
SNP A/T T A
rs31078683
MGI SNP Detail
Chr1:149324169 Gm29398 within coordinates of
Tssr14116 1521 bp downstream
SNP C/T T T C T T T T T T C T C C T
rs31078682
MGI SNP Detail
Chr1:149324210 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1480 bp downstream
SNP A/G G A G G A G G G G G A G G G G G
rs31078681
MGI SNP Detail
Chr1:149324222 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1468 bp downstream
SNP C/T T T C T C T T T T C T C C T
rs31078680
MGI SNP Detail
Chr1:149324253 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1437 bp downstream
SNP A/G A A G A A A A A A G A G G A
rs241608470
MGI SNP Detail
Chr1:149324286 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1404 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs31078679
MGI SNP Detail
Chr1:149324298 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1392 bp downstream
SNP C/G G G C G G G G G G G G G C G
rs31078678
MGI SNP Detail
Chr1:149324306 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1384 bp downstream
SNP C/T C C C C C C C C C C C C T
rs225561829
MGI SNP Detail
Chr1:149324317 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1373 bp downstream
SNP A/C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C T
rs31078677
MGI SNP Detail
Chr1:149324318 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1372 bp downstream
SNP A/G G G G G G G G G G G G A
rs257002025
MGI SNP Detail
Chr1:149324321 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1369 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31078676
MGI SNP Detail
Chr1:149324357 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1333 bp downstream
SNP A/G G G A G G G G G G G A A
rs31078675
MGI SNP Detail
Chr1:149324364 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1326 bp downstream
SNP A/T A A A A A A A T A T A
rs31078674
MGI SNP Detail
Chr1:149324373 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1317 bp downstream
SNP C/T T T T C T T T T T T C T C C T
rs218719100
MGI SNP Detail
Chr1:149324425 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1265 bp downstream
SNP A/G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236202301
MGI SNP Detail
Chr1:149324431 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1259 bp downstream
SNP A/G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G
rs249830024
MGI SNP Detail
Chr1:149324435 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1255 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs31077833
MGI SNP Detail
Chr1:149324445 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1245 bp downstream
SNP A/G A A G A G A A A A G A G G A
rs232380117
MGI SNP Detail
Chr1:149324454 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1236 bp downstream
SNP C/T T C
rs578457850
MGI SNP Detail
Chr1:149324516 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1174 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs581929182
MGI SNP Detail
Chr1:149324564 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1126 bp downstream
SNP A/G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G
rs31077832
MGI SNP Detail
Chr1:149324589 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1101 bp downstream
SNP A/G A A A G A G A A A A G A G G G
rs221193139
MGI SNP Detail
Chr1:149324650 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1040 bp downstream
SNP C/T T T T T T T T T C T T T T T T T T T T T T T C T T T T C T T T T T C T C T T T T C T T T T T T C C T T T C
rs238833998
MGI SNP Detail
Chr1:149324677 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 1013 bp downstream
SNP A/G/T A A A A A A A G A A A A A A A A A T A A A A A A A G A A A A A A A A A A G A A A G A A G G
rs263821710
MGI SNP Detail
Chr1:149324704 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 986 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221694022
MGI SNP Detail
Chr1:149324735 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 955 bp downstream
SNP C/T T C
rs248486357
MGI SNP Detail
Chr1:149324806 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 884 bp downstream
SNP A/G G A
rs254938659
MGI SNP Detail
Chr1:149324819 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 871 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs219672517
MGI SNP Detail
Chr1:149324866 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 824 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs238693145
MGI SNP Detail
Chr1:149324873 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 817 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs257524737
MGI SNP Detail
Chr1:149324880 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 810 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31077831
MGI SNP Detail
Chr1:149324908 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 782 bp downstream
SNP C/T C T C T T C T C C C T T C T T T
rs31077830
MGI SNP Detail
Chr1:149325244 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 446 bp downstream
SNP C/T T T T T C T
rs266053967
MGI SNP Detail
Chr1:149325306 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 384 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226822678
MGI SNP Detail
Chr1:149325335 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 355 bp downstream
SNP G/T G T
rs227231749
MGI SNP Detail
Chr1:149325438 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 252 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31077829
MGI SNP Detail
Chr1:149325632 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 58 bp downstream
SNP A/G G A A G A A A A A G A A A A A
rs213651713
MGI SNP Detail
Chr1:149325717 Gm29398 within coordinates of
Rr30991 within coordinates of
Tssr14116 13 bp upstream
Tssr14117 within coordinates of
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs226520468
MGI SNP Detail
Chr1:149325721 Rr30991 within coordinates of
Tssr14116 17 bp upstream
Tssr14117 within coordinates of
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs32312047
MGI SNP Detail
Chr1:149325723 Rr30991 within coordinates of
Tssr14116 19 bp upstream
SNP A/T A T T A T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31077828
MGI SNP Detail
Chr1:149325739 Rr30991 within coordinates of
Tssr14116 35 bp upstream
SNP A/C C C C C C A A C C C C C C
rs48179577
MGI SNP Detail
Chr1:149325748 Rr30991 within coordinates of
Tssr14116 44 bp upstream
SNP A/G G G A A
rs31077827
MGI SNP Detail
Chr1:149325783 Rr30991 within coordinates of
Tssr14116 79 bp upstream
SNP A/C C C C C C C C C A C C C
rs260381888
MGI SNP Detail
Chr1:149325791 Rr30991 within coordinates of
Tssr14116 87 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31077826
MGI SNP Detail
Chr1:149325870 Rr30991 within coordinates of
Tssr14116 166 bp upstream
SNP A/T A A A T A T A A A A T A T T A
rs31077825
MGI SNP Detail
Chr1:149325887 Rr30991 within coordinates of
Tssr14116 183 bp upstream
SNP C/T T T T C T C T T T T C T C C T
rs248972072
MGI SNP Detail
Chr1:149325921 Rr30991 within coordinates of
Tssr14116 217 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31077824
MGI SNP Detail
Chr1:149325957 Rr30991 within coordinates of
Tssr14116 253 bp upstream
SNP G/T G G G G T G G G G G G G
rs31077103
MGI SNP Detail
Chr1:149326009 Rr30991 within coordinates of
Tssr14116 305 bp upstream
SNP A/G G G G G G G G G G G A G
rs31077102
MGI SNP Detail
Chr1:149326022 Rr30991 within coordinates of
Tssr14116 318 bp upstream
SNP A/C C C C C C C C C A C C C
rs31077101
MGI SNP Detail
Chr1:149326128 Rr30991 within coordinates of
Tssr14116 424 bp upstream
SNP A/C A C A C C C A A A C C A C C C
rs225204400
MGI SNP Detail
Chr1:149326197 Rr30991 within coordinates of
Tssr14116 493 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249884391
MGI SNP Detail
Chr1:149326224 Tssr14116 520 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C G C C C C
rs264296787
MGI SNP Detail
Chr1:149326230 Tssr14116 526 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs227833614
MGI SNP Detail
Chr1:149326233 Tssr14116 529 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237775132
MGI SNP Detail
Chr1:149326255 Tssr14116 551 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs257221463
MGI SNP Detail
Chr1:149326256 Tssr14116 552 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226582426
MGI SNP Detail
Chr1:149326258 Tssr14116 554 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31077100
MGI SNP Detail
Chr1:149326377 Tssr14116 673 bp upstream
SNP C/T T T C T C T T T T C T C C T
rs217026820
MGI SNP Detail
Chr1:149326412 Tssr14116 708 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs31077099
MGI SNP Detail
Chr1:149326439 Tssr14116 735 bp upstream
SNP C/T C C C T C T C C C C T C T T C
rs31077098
MGI SNP Detail
Chr1:149326489 Tssr14116 785 bp upstream
SNP C/T C C T C C C C C C T C T T C
rs219517350
MGI SNP Detail
Chr1:149326531 Tssr14116 827 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs31077097
MGI SNP Detail
Chr1:149326556 Tssr14116 852 bp upstream
SNP C/T C C T C T C C C C T C T T C
rs212265627
MGI SNP Detail
Chr1:149326570 Tssr14116 866 bp upstream
SNP G/T G T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31077096
MGI SNP Detail
Chr1:149326643 Tssr14116 939 bp upstream
SNP A/G A A G A G A A A A G A G G A
rs249998282
MGI SNP Detail
Chr1:149326651 Tssr14116 947 bp upstream
SNP C/T T C
rs31077095
MGI SNP Detail
Chr1:149326674 Tssr14116 970 bp upstream
SNP A/C C C A C A C C C A C A C
rs31077094
MGI SNP Detail
Chr1:149326691 Tssr14116 987 bp upstream
SNP A/G A A G A G A A A A G A G G A
rs31076213
MGI SNP Detail
Chr1:149326703 Tssr14116 999 bp upstream
SNP C/T C C C C T C C C C C C C
rs225562080
MGI SNP Detail
Chr1:149326704 Tssr14116 1000 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247847055
MGI SNP Detail
Chr1:149326734 Tssr14116 1030 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264362293
MGI SNP Detail
Chr1:149326747 Tssr14116 1043 bp upstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
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Showing SNP(s) 1 - 83 of 83

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

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