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Mouse SNP Summary
Symbol
Name
ID 		Tssr14253
transcription start site region 14253
MGI:5942020

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246488236
MGI SNP Detail		 Chr1:153059928 Lamc2 within coordinates of
Tssr14253 1943 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs265610167
MGI SNP Detail		 Chr1:153059962 Lamc2 within coordinates of
Tssr14253 1909 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231283169
MGI SNP Detail		 Chr1:153059998 Lamc2 within coordinates of
Tssr14253 1873 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255686687
MGI SNP Detail		 Chr1:153060002 Lamc2 within coordinates of
Tssr14253 1869 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31469999
MGI SNP Detail		 Chr1:153060098 Lamc2 within coordinates of
Tssr14253 1773 bp downstream
 SNP G/T T T G G G G G G T T G T G G G
rs32481906
MGI SNP Detail		 Chr1:153060132 Lamc2 within coordinates of
Tssr14253 1739 bp downstream
 SNP A/C C A A C A C
rs31623516
MGI SNP Detail		 Chr1:153060159 Lamc2 within coordinates of
Tssr14253 1712 bp downstream
 SNP A/G G G A A G A A G G A A G G G G G
rs217192313
MGI SNP Detail		 Chr1:153060226 Lamc2 within coordinates of
Tssr14253 1645 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs51407257
MGI SNP Detail		 Chr1:153060230 Lamc2 within coordinates of
Tssr14253 1641 bp downstream
 SNP C/T T T T T T T T T T C C
rs252830747
MGI SNP Detail		 Chr1:153060231 Lamc2 within coordinates of
Tssr14253 1640 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G A G G G G G G G G G G G G G G G G G G G A A
rs260084579
MGI SNP Detail		 Chr1:153060240 Lamc2 within coordinates of
Tssr14253 1631 bp downstream
 SNP A/G G A
rs45816342
MGI SNP Detail		 Chr1:153060258 Lamc2 within coordinates of
Tssr14253 1613 bp downstream
 SNP C/T C T
rs45870766
MGI SNP Detail		 Chr1:153060260 Lamc2 within coordinates of
Tssr14253 1611 bp downstream
 SNP G/T T G T
rs578771868
MGI SNP Detail		 Chr1:153060534 Lamc2 within coordinates of
Tssr14253 1337 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs31337332
MGI SNP Detail		 Chr1:153060566 Lamc2 within coordinates of
Tssr14253 1305 bp downstream
 SNP C/T T T C C C C C C T T C T C C C
rs263224014
MGI SNP Detail		 Chr1:153060576 Lamc2 within coordinates of
Tssr14253 1295 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs13476184
MGI SNP Detail		 Chr1:153060621 Lamc2 within coordinates of
Tssr14253 1250 bp downstream
 SNP A/G G G A A A G G A A A A A A A G A A G G G G G A G A G G A G G G G G G G A G G A A G G G G G A
rs243610617
MGI SNP Detail		 Chr1:153060677 Lamc2 within coordinates of
Tssr14253 1194 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs257129888
MGI SNP Detail		 Chr1:153060687 Lamc2 within coordinates of
Tssr14253 1184 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs219564140
MGI SNP Detail		 Chr1:153060696 Lamc2 within coordinates of
Tssr14253 1175 bp downstream
 SNP A/G A G
rs46269455
MGI SNP Detail		 Chr1:153060712 Lamc2 within coordinates of
Tssr14253 1159 bp downstream
 SNP G/T G G G G G G G G G T
rs241213347
MGI SNP Detail		 Chr1:153060765 Lamc2 within coordinates of
Tssr14253 1106 bp downstream
 SNP A/G G A
rs51201132
MGI SNP Detail		 Chr1:153060780 Lamc2 within coordinates of
Tssr14253 1091 bp downstream
 SNP A/G G G G G G G G G G A
rs46054232
MGI SNP Detail		 Chr1:153060857 Lamc2 within coordinates of
Tssr14253 1014 bp downstream
 SNP C/T C C C T C C C C C T T T C
rs31198736
MGI SNP Detail		 Chr1:153060954 Lamc2 within coordinates of
Tssr14253 917 bp downstream
 SNP A/T T T A A A A T T A T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs45859518
MGI SNP Detail		 Chr1:153060996 Lamc2 within coordinates of
Tssr14253 875 bp downstream
 SNP C/G G G G G C G C G C
rs249978966
MGI SNP Detail		 Chr1:153061002 Lamc2 within coordinates of
Tssr14253 869 bp downstream
 SNP C/T T C
rs48103802
MGI SNP Detail		 Chr1:153061003 Lamc2 within coordinates of
Tssr14253 868 bp downstream
 SNP A/G A A A A G A A A A A A G G
rs581967974
MGI SNP Detail		 Chr1:153061019 Lamc2 within coordinates of
Tssr14253 852 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48047936
MGI SNP Detail		 Chr1:153061035 Lamc2 within coordinates of
Tssr14253 836 bp downstream
 SNP A/G A A A G A A A G A G G
rs49442050
MGI SNP Detail		 Chr1:153061139 Lamc2 within coordinates of
Tssr14253 732 bp downstream
 SNP C/T C C C T C C C C T C T T T C
rs212849367
MGI SNP Detail		 Chr1:153061265 Lamc2 within coordinates of
Tssr14253 606 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229906088
MGI SNP Detail		 Chr1:153061303 Lamc2 within coordinates of
Tssr14253 568 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46000207
MGI SNP Detail		 Chr1:153061326 Lamc2 within coordinates of
Tssr14253 545 bp downstream
 SNP A/G A A A G A A A A G A G G G A
rs226003094
MGI SNP Detail		 Chr1:153061359 Lamc2 within coordinates of
Tssr14253 512 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238850007
MGI SNP Detail		 Chr1:153061419 Lamc2 within coordinates of
Tssr14253 452 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs47682763
MGI SNP Detail		 Chr1:153061452 Lamc2 within coordinates of
Tssr14253 419 bp downstream
 SNP A/C C C C A C C C C A C A A A C
rs223570338
MGI SNP Detail		 Chr1:153061476 Lamc2 within coordinates of
Tssr14253 395 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs51661890
MGI SNP Detail		 Chr1:153061478 Lamc2 within coordinates of
Tssr14253 393 bp downstream
 SNP A/C C C C C A C C C C A C A A A C
rs32790036
MGI SNP Detail		 Chr1:153061513 Lamc2 within coordinates of
Tssr14253 358 bp downstream
 SNP A/G A A G G G G G A A G A G G G
rs218510497
MGI SNP Detail		 Chr1:153061636 Cpgi864 within coordinates of
Lamc2 within coordinates of
Tssr14253 235 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245563418
MGI SNP Detail		 Chr1:153061695 Cpgi864 within coordinates of
Lamc2 within coordinates of
Tssr14253 176 bp downstream
 SNP C/T C T
rs49667571
MGI SNP Detail		 Chr1:153061704 Cpgi864 within coordinates of
Lamc2 within coordinates of
Tssr14253 167 bp downstream
 SNP A/G G A A G A G G A G G G G
rs585583378
MGI SNP Detail		 Chr1:153061775 Cpgi864 within coordinates of
Lamc2 within coordinates of
Tssr14250 within coordinates of
Tssr14253 96 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs48185343
MGI SNP Detail		 Chr1:153061937 Cpgi864 within coordinates of
Lamc2 within coordinates of
Tssr14253 55 bp upstream
 SNP C/T T T T C T T T T C T C C C
rs246160230
MGI SNP Detail		 Chr1:153061938 Cpgi864 within coordinates of
Lamc2 within coordinates of
Tssr14253 56 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261705658
MGI SNP Detail		 Chr1:153061963 Cpgi864 within coordinates of
Lamc2 within coordinates of
Tssr14253 81 bp upstream
 SNP A/G G A
rs230657155
MGI SNP Detail		 Chr1:153062005 Cpgi864 within coordinates of
Lamc2 within coordinates of
Tssr14253 123 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212627992
MGI SNP Detail		 Chr1:153062061 Cpgi864 within coordinates of
Lamc2 within coordinates of
Tssr14253 179 bp upstream
 SNP C/T T C
rs212532147
MGI SNP Detail		 Chr1:153062198 Cpgi864 within coordinates of
Tssr14253 316 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs45958259
MGI SNP Detail		 Chr1:153062200 Cpgi864 within coordinates of
Tssr14253 318 bp upstream
 SNP C/G C C C G C C C C C C G G C
rs51803633
MGI SNP Detail		 Chr1:153062220 Tssr14253 338 bp upstream
 SNP C/G C C C C C C C C C C G C
rs217839969
MGI SNP Detail		 Chr1:153062247 Tssr14253 365 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs50823931
MGI SNP Detail		 Chr1:153062324 Tssr14253 442 bp upstream
 SNP G/T G G G G G G G G G T T G
rs258853200
MGI SNP Detail		 Chr1:153062327 Tssr14253 445 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs219253575
MGI SNP Detail		 Chr1:153062337 Tssr14253 455 bp upstream
 SNP C/T C T
rs49195875
MGI SNP Detail		 Chr1:153062356 Tssr14253 474 bp upstream
 SNP T T
rs579705279
MGI SNP Detail		 Chr1:153062409 Tssr14253 527 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs231941992
MGI SNP Detail		 Chr1:153062415 Tssr14253 533 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs241242422
MGI SNP Detail		 Chr1:153062501 Tssr14253 619 bp upstream
 SNP A/G A G
rs218186042
MGI SNP Detail		 Chr1:153062530 Tssr14253 648 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs243120433
MGI SNP Detail		 Chr1:153062637 Tssr14253 755 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254821706
MGI SNP Detail		 Chr1:153062644 Tssr14253 762 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225278524
MGI SNP Detail		 Chr1:153062696 Tssr14253 814 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31714403
MGI SNP Detail		 Chr1:153062698 Tssr14253 816 bp upstream
 SNP G/T G T T T G T T G G T G G G G
rs263079647
MGI SNP Detail		 Chr1:153062726 Tssr14253 844 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs47199476
MGI SNP Detail		 Chr1:153062730 Tssr14253 848 bp upstream
 SNP A/G A A A G A A A A G A G G G A
rs48938133
MGI SNP Detail		 Chr1:153062800 Tssr14253 918 bp upstream
 SNP C/T T T T C T T T T T C C T
rs254338045
MGI SNP Detail		 Chr1:153062816 Tssr14253 934 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs50861096
MGI SNP Detail		 Chr1:153062926 Tssr14253 1044 bp upstream
 SNP A/G G G G G A G G G A A A A G
rs247460126
MGI SNP Detail		 Chr1:153063024 Tssr14253 1142 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs31737117
MGI SNP Detail		 Chr1:153063060 Tssr14253 1178 bp upstream
 SNP A/G G A A A A A A G G A G A A A
rs227919903
MGI SNP Detail		 Chr1:153063116 Tssr14253 1234 bp upstream
 SNP A/G G A
rs238500867
MGI SNP Detail		 Chr1:153063170 Tssr14253 1288 bp upstream
 SNP A/G G A
rs255493115
MGI SNP Detail		 Chr1:153063185 Tssr14253 1303 bp upstream
 SNP C/G G C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227682117
MGI SNP Detail		 Chr1:153063224 Tssr14253 1342 bp upstream
 SNP C/T C T
rs32139431
MGI SNP Detail		 Chr1:153063295 Tssr14253 1413 bp upstream
 SNP A/G G A G
rs212191220
MGI SNP Detail		 Chr1:153063346 Tssr14253 1464 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C T
rs583138837
MGI SNP Detail		 Chr1:153063358 Tssr14253 1476 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A
rs220287817
MGI SNP Detail		 Chr1:153063468 Tssr14253 1586 bp upstream
 SNP A/G G G A G A A G G A A A A A A A A G A A G G G G A G G A G A G G G G G G A G G G G A A G G G G G G
rs236224684
MGI SNP Detail		 Chr1:153063474 Tssr14253 1592 bp upstream
 SNP A/G G G A G A A A G G A A A A A A A A G A A G G G G A G G A G A G G G G G G A G G G G A A G G G G G G
rs236450168
MGI SNP Detail		 Chr1:153063519 Tssr14253 1637 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245326186
MGI SNP Detail		 Chr1:153063542 Tssr14253 1660 bp upstream
 SNP C/T T C
rs219805378
MGI SNP Detail		 Chr1:153063573 Tssr14253 1691 bp upstream
 SNP A/C A C
rs234455353
MGI SNP Detail		 Chr1:153063592 Tssr14253 1710 bp upstream
 SNP A/G G A
rs32118443
MGI SNP Detail		 Chr1:153063765 Tssr14253 1883 bp upstream
 SNP C/T C C T
rs250184721
MGI SNP Detail		 Chr1:153063793 Tssr14253 1911 bp upstream
 SNP A/T T A
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Showing SNP(s) 1 - 87 of 87
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory