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Mouse SNP Summary
Symbol
Name
ID
Tssr15502
transcription start site region 15502
MGI:5943269

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Showing SNP(s) 1 - 72 of 72

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243656629
MGI SNP Detail
Chr1:179343616 Smyd3 within coordinates of
Tssr15502 1941 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T C C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T
rs581820034
MGI SNP Detail
Chr1:179343744 Smyd3 within coordinates of
Tssr15502 1813 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213063207
MGI SNP Detail
Chr1:179343745 Smyd3 within coordinates of
Tssr15502 1812 bp downstream
SNP C/T C C C T C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C C C C C T C C C C
rs231766492
MGI SNP Detail
Chr1:179343818 Smyd3 within coordinates of
Tssr15502 1739 bp downstream
SNP A/T T T T T T T T T T T T T T T T A T T A T T T T T T T T T T T T T T T T T T T A T T T T
rs585094903
MGI SNP Detail
Chr1:179343869 Smyd3 within coordinates of
Tssr15502 1688 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252165787
MGI SNP Detail
Chr1:179343871 Smyd3 within coordinates of
Tssr15502 1686 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs237893629
MGI SNP Detail
Chr1:179343911 Smyd3 within coordinates of
Tssr15502 1646 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs263264254
MGI SNP Detail
Chr1:179343919 Smyd3 within coordinates of
Tssr15502 1638 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs46952129
MGI SNP Detail
Chr1:179343923 Smyd3 within coordinates of
Tssr15502 1634 bp downstream
SNP A A A
rs225605439
MGI SNP Detail
Chr1:179343943 Smyd3 within coordinates of
Tssr15502 1614 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241462039
MGI SNP Detail
Chr1:179343950 Smyd3 within coordinates of
Tssr15502 1607 bp downstream
SNP C/T T T T T C T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T C T T T T T T T T T T T T T T T T T
rs253659620
MGI SNP Detail
Chr1:179343953 Smyd3 within coordinates of
Tssr15502 1604 bp downstream
SNP C/T T T T T C T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T C T T T T T T T T T T T T C T T T T
rs218498633
MGI SNP Detail
Chr1:179344134 Smyd3 within coordinates of
Tssr15502 1423 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs237169327
MGI SNP Detail
Chr1:179344135 Smyd3 within coordinates of
Tssr15502 1422 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs255971449
MGI SNP Detail
Chr1:179344221 Smyd3 within coordinates of
Tssr15502 1336 bp downstream
SNP A/C A A A A C A A A A A A A A A A A A A A C A A A A A A A C A A A A A C A C A A A A A A A A A A A A A A A A A
rs232553018
MGI SNP Detail
Chr1:179344426 Smyd3 within coordinates of
Tssr15502 1131 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs253497690
MGI SNP Detail
Chr1:179344442 Smyd3 within coordinates of
Tssr15502 1115 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs266027646
MGI SNP Detail
Chr1:179344447 Smyd3 within coordinates of
Tssr15502 1110 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs234092869
MGI SNP Detail
Chr1:179344499 Smyd3 within coordinates of
Tssr15502 1058 bp downstream
SNP G/T T G T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G T G G G T T G G G G T G T G G
rs243790944
MGI SNP Detail
Chr1:179344501 Smyd3 within coordinates of
Tssr15502 1056 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs213051675
MGI SNP Detail
Chr1:179344551 Smyd3 within coordinates of
Tssr15502 1006 bp downstream
SNP A/G G G G G A G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G A G G G G G G G G G G G G G G G G G
rs232041065
MGI SNP Detail
Chr1:179344776 Smyd3 within coordinates of
Tssr15502 781 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245784670
MGI SNP Detail
Chr1:179344801 Cpgi1095 within coordinates of
Smyd3 within coordinates of
Tssr15502 756 bp downstream
SNP A/T T T T T A T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T A T T T T T T T T T T T T T T T T T
rs215857862
MGI SNP Detail
Chr1:179344814 Cpgi1095 within coordinates of
Smyd3 within coordinates of
Tssr15502 743 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241205183
MGI SNP Detail
Chr1:179344873 Cpgi1095 within coordinates of
Smyd3 within coordinates of
Tssr15502 684 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C A A C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259410224
MGI SNP Detail
Chr1:179344882 Cpgi1095 within coordinates of
Smyd3 within coordinates of
Tssr15502 675 bp downstream
SNP A/T T T T T A T T T T T T T T T T T T A A A T T A T T T T A T T T T T A T A T T T T T T T T T T A T T T T A A
rs218096137
MGI SNP Detail
Chr1:179344958 Cpgi1095 within coordinates of
Smyd3 within coordinates of
Tssr15502 599 bp downstream
SNP C/G G G G G C G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G C G G G G G G G G G G G G C G G G G
rs32636963
MGI SNP Detail
Chr1:179345030 Cpgi1095 within coordinates of
Smyd3 within coordinates of
Tssr15502 527 bp downstream
SNP A/C A A A C
rs248097428
MGI SNP Detail
Chr1:179345225 Cpgi1095 within coordinates of
Smyd3 within coordinates of
Tssr15502 332 bp downstream
SNP A/G A A A A G A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A G A A A A A A A A A A A A A A A A A
rs218448949
MGI SNP Detail
Chr1:179345238 Cpgi1095 within coordinates of
Smyd3 within coordinates of
Tssr15502 319 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs237308154
MGI SNP Detail
Chr1:179345276 Cpgi1095 within coordinates of
Smyd3 within coordinates of
Tssr15502 281 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262338815
MGI SNP Detail
Chr1:179345282 Cpgi1095 within coordinates of
Smyd3 within coordinates of
Tssr15502 275 bp downstream
SNP A/G A A A A G A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A G A A A A A A A A A A A A A A A A A
rs223871392
MGI SNP Detail
Chr1:179345296 Cpgi1095 within coordinates of
Smyd3 within coordinates of
Tssr15502 261 bp downstream
SNP A/T T T T T A T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T A T T T T T T T T T T T T A T T T T
rs248531511
MGI SNP Detail
Chr1:179345442 Cpgi1095 within coordinates of
Rr396646 within coordinates of
Smyd3 within coordinates of
Tssr15502 115 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264187090
MGI SNP Detail
Chr1:179345445 Cpgi1095 within coordinates of
Rr396646 within coordinates of
Smyd3 within coordinates of
Tssr15502 112 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs235800995
MGI SNP Detail
Chr1:179345480 Cpgi1095 within coordinates of
Rr396646 within coordinates of
Smyd3 within coordinates of
Tssr15502 77 bp downstream
SNP C/T T T T T C T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T C T T T T T T T T T T T C T T T T
rs237514566
MGI SNP Detail
Chr1:179345481 Cpgi1095 within coordinates of
Rr396646 within coordinates of
Smyd3 within coordinates of
Tssr15502 76 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32030656
MGI SNP Detail
Chr1:179345585 Cpgi1095 within coordinates of
Rr396646 within coordinates of
Rr424271 within coordinates of
Smyd3 within coordinates of
Tssr15502 within coordinates of
SNP A/G G A G G
rs225935665
MGI SNP Detail
Chr1:179345629 Cpgi1095 within coordinates of
Rr396646 within coordinates of
Rr424271 within coordinates of
Tssr15502 38 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs245862417
MGI SNP Detail
Chr1:179345672 Cpgi1095 within coordinates of
Rr396646 within coordinates of
Rr424271 within coordinates of
Tssr15502 81 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs216405532
MGI SNP Detail
Chr1:179345682 Cpgi1095 within coordinates of
Rr396646 within coordinates of
Rr424271 within coordinates of
Tssr15502 91 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs583738037
MGI SNP Detail
Chr1:179345709 Rr396646 within coordinates of
Rr424271 within coordinates of
Tssr15502 118 bp upstream
SNP C/T C C C C T C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C T C C C C C C C C C C C C T C C C C
rs587525299
MGI SNP Detail
Chr1:179345718 Rr396646 within coordinates of
Rr424271 within coordinates of
Tssr15502 127 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs232413605
MGI SNP Detail
Chr1:179345812 Rr424271 within coordinates of
Tssr15502 221 bp upstream
SNP G/T T T T T G T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T G T T T T T T T T T T T T T T T T T
rs107709709
MGI SNP Detail
Chr1:179345866 Rr424271 within coordinates of
Tssr15502 275 bp upstream
SNP C/T T C
rs259303566
MGI SNP Detail
Chr1:179345879 Rr424271 within coordinates of
Tssr15502 288 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580086809
MGI SNP Detail
Chr1:179345911 Rr424271 within coordinates of
Tssr15502 320 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs217952851
MGI SNP Detail
Chr1:179345949 Rr424271 within coordinates of
Tssr15502 358 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235199557
MGI SNP Detail
Chr1:179345951 Rr424271 within coordinates of
Tssr15502 360 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248045814
MGI SNP Detail
Chr1:179345955 Rr424271 within coordinates of
Tssr15502 364 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212737880
MGI SNP Detail
Chr1:179346021 Tssr15502 430 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231324099
MGI SNP Detail
Chr1:179346023 Tssr15502 432 bp upstream
SNP A/G G G G G A G G G G G G G G G G G G G G A G G A G G G G A G G G G A G A G G G G G G G G G G G G G G G G G
rs257599424
MGI SNP Detail
Chr1:179346134 Tssr15502 543 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223910895
MGI SNP Detail
Chr1:179346154 Tssr15502 563 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245953092
MGI SNP Detail
Chr1:179346166 Tssr15502 575 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs263640996
MGI SNP Detail
Chr1:179346189 Tssr15502 598 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223791979
MGI SNP Detail
Chr1:179346379 Tssr15502 788 bp upstream
SNP A/G G G G G A G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G A G G G G G G G G G G G G G G G G
rs32637566
MGI SNP Detail
Chr1:179346617 Tssr15502 1026 bp upstream
SNP A/T A T A
rs257157408
MGI SNP Detail
Chr1:179346765 Tssr15502 1174 bp upstream
SNP A/G G G G G A G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G A G G G G G G G G G G G G G G G G
rs30595459
MGI SNP Detail
Chr1:179347041 Tssr15502 1450 bp upstream
SNP A/G G A G
rs583759920
MGI SNP Detail
Chr1:179347081 Tssr15502 1490 bp upstream
SNP A/T T T T T A T T T T T T T T T T T T A A A T T A T T T T A T T T T T A T A T T T T T T T T T T A T T T A
rs586831264
MGI SNP Detail
Chr1:179347150 Tssr15502 1559 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs581003926
MGI SNP Detail
Chr1:179347163 Tssr15502 1572 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs584625142
MGI SNP Detail
Chr1:179347175 Tssr15502 1584 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs586210405
MGI SNP Detail
Chr1:179347210 Tssr15502 1619 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs247205032
MGI SNP Detail
Chr1:179347222 Tssr15502 1631 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263245174
MGI SNP Detail
Chr1:179347242 Tssr15502 1651 bp upstream
SNP C/T T T T C T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T C T T T T T T T T T T T T C T T T T
rs233368992
MGI SNP Detail
Chr1:179347315 Tssr15502 1724 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253970744
MGI SNP Detail
Chr1:179347358 Tssr15502 1767 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs580857707
MGI SNP Detail
Chr1:179347377 Tssr15502 1786 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs219219343
MGI SNP Detail
Chr1:179347498 Tssr15502 1907 bp upstream
SNP G/T G G G G T G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G T G G G G G G G G G G G G G G G G G
rs223582795
MGI SNP Detail
Chr1:179347512 Tssr15502 1921 bp upstream
SNP A/G G G G G A G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G A G G G G G G G G G G G G G G G G G
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Showing SNP(s) 1 - 72 of 72

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

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