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Mouse SNP Summary
Symbol
Name
ID
Tssr15744
transcription start site region 15744
MGI:5943511

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235587441
MGI SNP Detail
Chr1:190709483 Tssr15744 1897 bp downstream
Vash2 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs253705727
MGI SNP Detail
Chr1:190709520 Tssr15744 1860 bp downstream
Vash2 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221104507
MGI SNP Detail
Chr1:190709532 Tssr15744 1848 bp downstream
Vash2 within coordinates of
SNP A/C/G C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C A C C C C C C C C C C C C G C C C C
rs247033852
MGI SNP Detail
Chr1:190709581 Tssr15744 1799 bp downstream
Vash2 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262463142
MGI SNP Detail
Chr1:190709605 Tssr15744 1775 bp downstream
Vash2 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G A G A A A A A A A A A A A A G A A A A
rs220913000
MGI SNP Detail
Chr1:190709628 Tssr15744 1752 bp downstream
Vash2 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241062887
MGI SNP Detail
Chr1:190709668 Tssr15744 1712 bp downstream
Vash2 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259823861
MGI SNP Detail
Chr1:190709684 Tssr15744 1696 bp downstream
Vash2 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A G A A A A A A A A A A A A G A A A A
rs228419026
MGI SNP Detail
Chr1:190709786 Tssr15744 1594 bp downstream
Vash2 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs245974384
MGI SNP Detail
Chr1:190709793 Tssr15744 1587 bp downstream
Vash2 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582979348
MGI SNP Detail
Chr1:190709847 Tssr15744 1533 bp downstream
Vash2 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs584866004
MGI SNP Detail
Chr1:190709870 Tssr15744 1510 bp downstream
Vash2 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G A G G G G G G G G G G G G A G G G G
rs256821339
MGI SNP Detail
Chr1:190710078 Tssr15744 1302 bp downstream
Vash2 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T G T G T T T T T T T T T T T T G T T T T
rs579072179
MGI SNP Detail
Chr1:190710101 Tssr15744 1279 bp downstream
Vash2 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs230644034
MGI SNP Detail
Chr1:190710275 Cpgi1214 within coordinates of
Tssr15744 1105 bp downstream
Vash2 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs221043065
MGI SNP Detail
Chr1:190710748 Cpgi1214 within coordinates of
Tssr15744 632 bp downstream
Vash2 within coordinates of
SNP C/T T C
rs212651295
MGI SNP Detail
Chr1:190710820 Cpgi1214 within coordinates of
Tssr15744 560 bp downstream
Vash2 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229568993
MGI SNP Detail
Chr1:190710866 Cpgi1214 within coordinates of
Tssr15744 514 bp downstream
Vash2 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T C T T T T T T T T T T T T C T T T T
rs249399631
MGI SNP Detail
Chr1:190711019 Cpgi1214 within coordinates of
Tssr15744 361 bp downstream
Vash2 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs217759329
MGI SNP Detail
Chr1:190711046 Cpgi1214 within coordinates of
Tssr15744 334 bp downstream
Vash2 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs235914877
MGI SNP Detail
Chr1:190711089 Cpgi1214 within coordinates of
Tssr15744 291 bp downstream
Vash2 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs253966767
MGI SNP Detail
Chr1:190711096 Cpgi1214 within coordinates of
Tssr15744 284 bp downstream
Vash2 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs215207999
MGI SNP Detail
Chr1:190711101 Cpgi1214 within coordinates of
Tssr15744 279 bp downstream
Vash2 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C G C C C C C C C C C C C C G C C C C
rs237119996
MGI SNP Detail
Chr1:190711129 Cpgi1214 within coordinates of
Tssr15744 251 bp downstream
Vash2 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T C T T T T T T T T T T T T C T T T T
rs262107266
MGI SNP Detail
Chr1:190711141 Cpgi1214 within coordinates of
Tssr15744 239 bp downstream
Vash2 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A C A A A A A A A A A A A A C A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221873757
MGI SNP Detail
Chr1:190711209 Cpgi1214 within coordinates of
Tssr15744 171 bp downstream
Vash2 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A A C A A A A A A A A A A A A C A A A A
rs243821567
MGI SNP Detail
Chr1:190711282 Cpgi1214 within coordinates of
Tssr15744 98 bp downstream
Vash2 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs253059645
MGI SNP Detail
Chr1:190711442 Cpgi1214 within coordinates of
Tssr15744 55 bp upstream
Vash2 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs221881869
MGI SNP Detail
Chr1:190711481 Cpgi1214 within coordinates of
Tssr15744 94 bp upstream
Tssr15747 within coordinates of
Vash2 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs239957969
MGI SNP Detail
Chr1:190711702 Cpgi1214 within coordinates of
Tssr15744 315 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C G C G C C C C C C C C C C C C G C C C C
rs257199922
MGI SNP Detail
Chr1:190711703 Cpgi1214 within coordinates of
Tssr15744 316 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230779331
MGI SNP Detail
Chr1:190711743 Cpgi1214 within coordinates of
Tssr15744 356 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs242792426
MGI SNP Detail
Chr1:190711785 Cpgi1214 within coordinates of
Tssr15744 398 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264799372
MGI SNP Detail
Chr1:190711861 Tssr15744 474 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T G T T T T T T T T T T T T G T T T T
rs227439534
MGI SNP Detail
Chr1:190711918 Tssr15744 531 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248596098
MGI SNP Detail
Chr1:190711952 Tssr15744 565 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217661994
MGI SNP Detail
Chr1:190712023 Tssr15744 636 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582098336
MGI SNP Detail
Chr1:190712049 Tssr15744 662 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs580463731
MGI SNP Detail
Chr1:190712192 Tssr15744 805 bp upstream
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs580135414
MGI SNP Detail
Chr1:190712244 Tssr15744 857 bp upstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs583291142
MGI SNP Detail
Chr1:190712271 Tssr15744 884 bp upstream
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs228772086
MGI SNP Detail
Chr1:190712363 Tssr15744 976 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs247609413
MGI SNP Detail
Chr1:190712386 Tssr15744 999 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs215562032
MGI SNP Detail
Chr1:190712412 Tssr15744 1025 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs239052953
MGI SNP Detail
Chr1:190712414 Tssr15744 1027 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs257179483
MGI SNP Detail
Chr1:190712428 Tssr15744 1041 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213372576
MGI SNP Detail
Chr1:190712462 Tssr15744 1075 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs234817163
MGI SNP Detail
Chr1:190712463 Tssr15744 1076 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs253352418
MGI SNP Detail
Chr1:190712512 Tssr15744 1125 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs221848843
MGI SNP Detail
Chr1:190712529 Tssr15744 1142 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239950517
MGI SNP Detail
Chr1:190712542 Tssr15744 1155 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs251195366
MGI SNP Detail
Chr1:190712555 Tssr15744 1168 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A G A A A A A A A A A A A A G A G A
rs586549615
MGI SNP Detail
Chr1:190712627 Tssr15744 1240 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T A T T T T A T A T T T T T T T T T T T T T T
rs223428385
MGI SNP Detail
Chr1:190712741 Tssr15744 1354 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs245562961
MGI SNP Detail
Chr1:190712759 Tssr15744 1372 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs261769189
MGI SNP Detail
Chr1:190712772 Tssr15744 1385 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C T C C C C C C C C C C C C T C C C C
rs227754649
MGI SNP Detail
Chr1:190712789 Tssr15744 1402 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242516556
MGI SNP Detail
Chr1:190712793 Tssr15744 1406 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C T C C C C C C C C C C C C T C C C C
rs260482054
MGI SNP Detail
Chr1:190712809 Tssr15744 1422 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs228750491
MGI SNP Detail
Chr1:190712837 Tssr15744 1450 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs247546989
MGI SNP Detail
Chr1:190712867 Tssr15744 1480 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A C A A A A A A A A A A A A C A A A A
rs265596993
MGI SNP Detail
Chr1:190712875 Tssr15744 1488 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs231234006
MGI SNP Detail
Chr1:190713041 Tssr15744 1654 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs255752855
MGI SNP Detail
Chr1:190713104 Tssr15744 1717 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212861873
MGI SNP Detail
Chr1:190713220 Tssr15744 1833 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A G A A A A A A A A A A A A G A A A A
rs36809657
MGI SNP Detail
Chr1:190713237 Tssr15744 1850 bp upstream
SNP G/T T T T T T T G T T T T T T T
rs241150944
MGI SNP Detail
Chr1:190713292 Tssr15744 1905 bp upstream
SNP A/T T A
rs265208435
MGI SNP Detail
Chr1:190713296 Tssr15744 1909 bp upstream
SNP C/G G C
rs233452416
MGI SNP Detail
Chr1:190713313 Tssr15744 1926 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C T C C C C C C C C C C C C C C C C C T C T C C C T C
rs251144560
MGI SNP Detail
Chr1:190713314 Tssr15744 1927 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A C C A C A A A C A C A A A A A A A A A C A C C A A C A
rs223018076
MGI SNP Detail
Chr1:190713315 Tssr15744 1928 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T A A T T T T A T A T T T T T T T T T A T A A T T A T
rs236159595
MGI SNP Detail
Chr1:190713323 Tssr15744 1936 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G A G G G G G G G G G G G G A G G G G
rs219274219
MGI SNP Detail
Chr1:190713344 Tssr15744 1957 bp upstream
SNP C/T C T
rs241097467
MGI SNP Detail
Chr1:190713349 Tssr15744 1962 bp upstream
SNP A/G G A
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Showing SNP(s) 1 - 74 of 74

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory

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