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Mouse SNP Summary
Symbol
Name
ID 		Tssr15825
transcription start site region 15825
MGI:5943592

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Showing SNP(s) 1 - 55 of 55

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs51120919
MGI SNP Detail		 Chr1:191820269 Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 1983 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T C C C C T T T T T T C T T C T T T T
rs228725188
MGI SNP Detail		 Chr1:191820472 Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 1780 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs30663190
MGI SNP Detail		 Chr1:191820611 Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 1641 bp downstream
 SNP G/T T G T T T T
rs31329911
MGI SNP Detail		 Chr1:191820618 Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 1634 bp downstream
 SNP C/T T C T T C T
rs32258796
MGI SNP Detail		 Chr1:191820649 Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 1603 bp downstream
 SNP A/T A A T A A T A
rs32663579
MGI SNP Detail		 Chr1:191820673 Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 1579 bp downstream
 SNP A/G A G A A G A
rs31418990
MGI SNP Detail		 Chr1:191820682 Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 1570 bp downstream
 SNP C/T C C T T C T
rs236176146
MGI SNP Detail		 Chr1:191820693 Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 1559 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs218104232
MGI SNP Detail		 Chr1:191821157 Cpgi1232 within coordinates of
Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 1095 bp downstream
 SNP G/T G G G T G G G G G G T T T T G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs234616242
MGI SNP Detail		 Chr1:191821158 Cpgi1232 within coordinates of
Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 1094 bp downstream
 SNP A/G G A A G A A A G A A G G G G A G A A G A G G G A G G G G A A G A G A A A G G A A G G A A G G A G A G
rs252697669
MGI SNP Detail		 Chr1:191821210 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 1042 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220019164
MGI SNP Detail		 Chr1:191821295 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 957 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238669227
MGI SNP Detail		 Chr1:191821344 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 908 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs32299006
MGI SNP Detail		 Chr1:191821388 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 864 bp downstream
 SNP C/T C C C T
rs32286193
MGI SNP Detail		 Chr1:191821407 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 845 bp downstream
 SNP C/T C C T C T C
rs582702959
MGI SNP Detail		 Chr1:191821577 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 675 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32183082
MGI SNP Detail		 Chr1:191821631 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 621 bp downstream
 SNP A/C C C A C C A
rs264588823
MGI SNP Detail		 Chr1:191821662 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 590 bp downstream
 SNP C/T C C T T C T T T C T C C C C T C T T C T C C C T C C C C T T C T C T T T C C T T T C T T C T C T C
rs248911167
MGI SNP Detail		 Chr1:191822313 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rcor3 within coordinates of
Rr29207 within coordinates of
Tssr15825 49 bp upstream
Tssr15826 within coordinates of
 SNP A/G A G
rs250912695
MGI SNP Detail		 Chr1:191822391 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 127 bp upstream
 SNP C/G C G G G G G G C G G G G G C G G C G G C G G G G G G C C G G C G G G G G G G G
rs213334120
MGI SNP Detail		 Chr1:191822443 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 179 bp upstream
 SNP C/G C G G G G G G C G G G G G G G C G G C G G G C C G G G G G G G G C C G G G C G G G G G G G G
rs227694866
MGI SNP Detail		 Chr1:191822509 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 245 bp upstream
 SNP A/C A C C C C C C A C C C C C C C C A C C A A C C C A A C C C C C C C C A A C C C A C C C C C C C
rs260307854
MGI SNP Detail		 Chr1:191822566 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 302 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C G C C C C C C C C C C C C G C C C C
rs216625752
MGI SNP Detail		 Chr1:191822627 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 363 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C T C C C C C C C C C C C C T C C C C
rs216753822
MGI SNP Detail		 Chr1:191822642 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 378 bp upstream
 SNP C/T C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs51334759
MGI SNP Detail		 Chr1:191822676 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 412 bp upstream
 SNP C/G C G G C
rs252683418
MGI SNP Detail		 Chr1:191822797 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 533 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214317307
MGI SNP Detail		 Chr1:191822909 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 645 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G A G G G G G G G G G G G G A G G G G
rs30615311
MGI SNP Detail		 Chr1:191822927 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 663 bp upstream
 SNP A/T T T A T A
rs256022596
MGI SNP Detail		 Chr1:191823046 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 782 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C G C C C C C C C C C C C C G C G C C
rs219841493
MGI SNP Detail		 Chr1:191823072 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 808 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs248011340
MGI SNP Detail		 Chr1:191823085 Cpgi1232 within coordinates of
Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 821 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A G A A A A A A A A A A A A G A G A A
rs263630947
MGI SNP Detail		 Chr1:191823245 Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 981 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222278184
MGI SNP Detail		 Chr1:191823323 Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 1059 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240451798
MGI SNP Detail		 Chr1:191823457 Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 1193 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs257519322
MGI SNP Detail		 Chr1:191823472 Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 1208 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220302323
MGI SNP Detail		 Chr1:191823486 Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 1222 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246304183
MGI SNP Detail		 Chr1:191823489 Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 1225 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs584816552
MGI SNP Detail		 Chr1:191823566 Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 1302 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262013276
MGI SNP Detail		 Chr1:191823602 Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 1338 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs32080452
MGI SNP Detail		 Chr1:191823674 Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 1410 bp upstream
 SNP A/G G G G A G G G
rs254736065
MGI SNP Detail		 Chr1:191823687 Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 1423 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260731197
MGI SNP Detail		 Chr1:191823782 Gm10516 within coordinates of
Rr29207 within coordinates of
Tssr15825 1518 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228073945
MGI SNP Detail		 Chr1:191823829 Gm10516 within coordinates of
Tssr15825 1565 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246478252
MGI SNP Detail		 Chr1:191823848 Gm10516 within coordinates of
Tssr15825 1584 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214398598
MGI SNP Detail		 Chr1:191823868 Gm10516 within coordinates of
Tssr15825 1604 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32789198
MGI SNP Detail		 Chr1:191823888 Gm10516 within coordinates of
Tssr15825 1624 bp upstream
 SNP A/G G G G A G G G
rs254035511
MGI SNP Detail		 Chr1:191823955 Gm10516 within coordinates of
Tssr15825 1691 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs32183311
MGI SNP Detail		 Chr1:191824125 Gm10516 within coordinates of
Tssr15825 1861 bp upstream
 SNP G/T G G T G G T
rs32047244
MGI SNP Detail		 Chr1:191824131 Gm10516 within coordinates of
Tssr15825 1867 bp upstream
 SNP C/G G G C G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32582421
MGI SNP Detail		 Chr1:191824207 Gm10516 within coordinates of
Tssr15825 1943 bp upstream
 SNP A/G G G A G G A
rs221207857
MGI SNP Detail		 Chr1:191824226 Gm10516 within coordinates of
Tssr15825 1962 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233885049
MGI SNP Detail		 Chr1:191824235 Gm10516 within coordinates of
Tssr15825 1971 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31530346
MGI SNP Detail		 Chr1:191824237 Gm10516 within coordinates of
Tssr15825 1973 bp upstream
 SNP A/G A A G A A G
rs220378750
MGI SNP Detail		 Chr1:191824256 Gm10516 within coordinates of
Tssr15825 1992 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 55 of 55
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory